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The map label for this gene is yifB [H]

Identifier: 94985494

GI number: 94985494

Start: 1477606

End: 1479105

Strand: Reverse

Name: yifB [H]

Synonym: Dgeo_1394

Alternate gene names: 94985494

Gene position: 1479105-1477606 (Counterclockwise)

Preceding gene: 94985495

Following gene: 94985492

Centisome position: 59.95

GC content: 72.2

Gene sequence:

>1500_bases
ATGTTGGCCCGTGCCCGCAGCGTCGCCCTGATCGGCGTGGACGCGGTGCCGGTCGAGGTGGAGGTGGATGTCTCTCCCGG
CCTGCCGGCCTTTACGGTGGTGGGGCTGCCTGATCAGGCCGTCAGCGAGGCCCGCGAGCGGGTGCGGGCGGCGGTGCGGA
ACGCGGGGTTGCCCTTTCCCGCCGCACGCATCACCGTGAACCTCGCGCCCGCCGACCTGCGCAAGGAGGGGCCGCTCTAC
GACCTGCCCATCGCGCTGGGCCTGCTCGCGGCGCAGGAGCTGCTGCCCGCTGAAGCCTTGGCCGGGGTGCTGAGCGCTGG
AGAACTCGCCCTCGACGGCTCGCTGCGGCCCATCGCGGGGGCAGTGAATCTTGCGCTGCGCGCCGCCGCGGAGGGGTGTC
CCGTCCTGATTCCCGAGGGCAATGCCGGCGAGGCCGCCCTGATTGACGGCGTAACCGTTCACGGTGCCCCGTCCCTGCTG
AGCGCGGTGCGCCACCTGACCGGGCAGGCACCCCTGGGCCGGGCGCTGCCGCCCGAGGCGCCGCCGCTTGATCCGACTCT
CCCCGACCTGGCGGACCTCAAGGGGCAGACTGCGGCCAAGCGGGCGCTGGAAATCGCCGTTGCGGGTGGGCACAACCTGC
TGCTGGTCGGCTCGCCCGGCAGCGGCAAGACCATGCTGGCTCGCCGCGCGCCTGGCCTGCTGCCCCCCCTCACCCGCGAG
GAGGCCCTGGAGGTGACGCGCATTCACTCCGCCGCGGGGCTACTCACGGCGCGCAGCGGTCTGATGGGACACCCTCCCTA
CCGTGCGCCGCACCACACTGTCAGCGACGCAGGGCTGATTGGCGGGGGCAGTGTGCCGCGGCCCGGCGAGGTCAGCCTCG
CGCACCGGGGCATCCTCTTCCTCGACGAGTTTCCCGAGTTCTCCCGCAAGGCGCTCGAAACCCTGCGTCAGCCGCTTGAA
GACGGGCAGGTCTCGATCAGCCGCGCCCGCGCTACCGTCTGCTATCCGGCCCGCTTTCAGCTGATCGCCGCGATGAATCC
CTGCCCGTGCGGGCACCAGGGCGACCCCGAAAAAGCCTGCACCTGCACGCCGAGCGAGCGGAGCCGCTACGCTGCCCGCC
TGAGCGGCCCGCTGCTCGACCGGCTTGATCTGATTGTGCGCGTGCCGCGCTTGACGGTGGATGAGCTGACCCGCGCCCCA
GAAGCAGAGAAGAGCGAGGCCGTTCGGCAACGGGTCATCCGTGCCCGGGCGGCCATGCTGGCTCGTCAGGGCGTGCGCAA
CAGTGACCTGGCGGGGCAGATGCTGCGGCAGCATGCACCGCTGGCGCCCGGCCCCGAGGCCTTTCTCCGCGCGGCGGCCC
GACAGCTCAACCTCACCGGGCGCGGTTTTGACCGGGTGCTGCGGGTGGCCCGAACCGTTGCGGACCTGGCGGGCAGCCCC
GATATTCGCGAGGCGCATCTGGCCGAGGCCGTCACCTACCGGCCCCGAGAGCTGACCTGA

Upstream 100 bases:

>100_bases
ACGTGCGGGTGATCGGGACGCGCGAGGTAGCGGCCGTGCTGCTGGTCCATGCCGGGCCAGGAACAGTCGGGGTGGCGGGC
GTGCCGCCGGTGGTGCGCTG

Downstream 100 bases:

>100_bases
GGCGGGCTAGACCGTTCCCTCGCTGCTGTCGCGGTGGTTGGGAGCGGTTCCGTCGTCCGGCCCGCTTCCGTCGTCGGCTC
GCTCCGTGAGGCGCTCTCCA

Product: Mg chelatase-related protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 499; Mature: 499

Protein sequence:

>499_residues
MLARARSVALIGVDAVPVEVEVDVSPGLPAFTVVGLPDQAVSEARERVRAAVRNAGLPFPAARITVNLAPADLRKEGPLY
DLPIALGLLAAQELLPAEALAGVLSAGELALDGSLRPIAGAVNLALRAAAEGCPVLIPEGNAGEAALIDGVTVHGAPSLL
SAVRHLTGQAPLGRALPPEAPPLDPTLPDLADLKGQTAAKRALEIAVAGGHNLLLVGSPGSGKTMLARRAPGLLPPLTRE
EALEVTRIHSAAGLLTARSGLMGHPPYRAPHHTVSDAGLIGGGSVPRPGEVSLAHRGILFLDEFPEFSRKALETLRQPLE
DGQVSISRARATVCYPARFQLIAAMNPCPCGHQGDPEKACTCTPSERSRYAARLSGPLLDRLDLIVRVPRLTVDELTRAP
EAEKSEAVRQRVIRARAAMLARQGVRNSDLAGQMLRQHAPLAPGPEAFLRAAARQLNLTGRGFDRVLRVARTVADLAGSP
DIREAHLAEAVTYRPRELT

Sequences:

>Translated_499_residues
MLARARSVALIGVDAVPVEVEVDVSPGLPAFTVVGLPDQAVSEARERVRAAVRNAGLPFPAARITVNLAPADLRKEGPLY
DLPIALGLLAAQELLPAEALAGVLSAGELALDGSLRPIAGAVNLALRAAAEGCPVLIPEGNAGEAALIDGVTVHGAPSLL
SAVRHLTGQAPLGRALPPEAPPLDPTLPDLADLKGQTAAKRALEIAVAGGHNLLLVGSPGSGKTMLARRAPGLLPPLTRE
EALEVTRIHSAAGLLTARSGLMGHPPYRAPHHTVSDAGLIGGGSVPRPGEVSLAHRGILFLDEFPEFSRKALETLRQPLE
DGQVSISRARATVCYPARFQLIAAMNPCPCGHQGDPEKACTCTPSERSRYAARLSGPLLDRLDLIVRVPRLTVDELTRAP
EAEKSEAVRQRVIRARAAMLARQGVRNSDLAGQMLRQHAPLAPGPEAFLRAAARQLNLTGRGFDRVLRVARTVADLAGSP
DIREAHLAEAVTYRPRELT
>Mature_499_residues
MLARARSVALIGVDAVPVEVEVDVSPGLPAFTVVGLPDQAVSEARERVRAAVRNAGLPFPAARITVNLAPADLRKEGPLY
DLPIALGLLAAQELLPAEALAGVLSAGELALDGSLRPIAGAVNLALRAAAEGCPVLIPEGNAGEAALIDGVTVHGAPSLL
SAVRHLTGQAPLGRALPPEAPPLDPTLPDLADLKGQTAAKRALEIAVAGGHNLLLVGSPGSGKTMLARRAPGLLPPLTRE
EALEVTRIHSAAGLLTARSGLMGHPPYRAPHHTVSDAGLIGGGSVPRPGEVSLAHRGILFLDEFPEFSRKALETLRQPLE
DGQVSISRARATVCYPARFQLIAAMNPCPCGHQGDPEKACTCTPSERSRYAARLSGPLLDRLDLIVRVPRLTVDELTRAP
EAEKSEAVRQRVIRARAAMLARQGVRNSDLAGQMLRQHAPLAPGPEAFLRAAARQLNLTGRGFDRVLRVARTVADLAGSP
DIREAHLAEAVTYRPRELT

Specific function: Unknown

COG id: COG0606

COG function: function code O; Predicted ATPase with chaperone activity

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Mg-chelatase subunits D/I family. ComM subfamily [H]

Homologues:

Organism=Escherichia coli, GI145693202, Length=497, Percent_Identity=46.8812877263582, Blast_Score=404, Evalue=1e-114,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR004482
- InterPro:   IPR000523
- InterPro:   IPR020568 [H]

Pfam domain/function: PF01078 Mg_chelatase [H]

EC number: NA

Molecular weight: Translated: 52397; Mature: 52397

Theoretical pI: Translated: 8.61; Mature: 8.61

Prosite motif: PS50051 MCM_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLARARSVALIGVDAVPVEVEVDVSPGLPAFTVVGLPDQAVSEARERVRAAVRNAGLPFP
CCCCCCEEEEEECCCEEEEEEEECCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCC
AARITVNLAPADLRKEGPLYDLPIALGLLAAQELLPAEALAGVLSAGELALDGSLRPIAG
CEEEEEEECCHHHHCCCCCEEHHHHHHHHHHHHHCCHHHHHHHHHCCCEEECCCCCHHHH
AVNLALRAAAEGCPVLIPEGNAGEAALIDGVTVHGAPSLLSAVRHLTGQAPLGRALPPEA
HHHHHHHHHCCCCCEEEECCCCCCEEEECCEEECCHHHHHHHHHHHCCCCCCCCCCCCCC
PPLDPTLPDLADLKGQTAAKRALEIAVAGGHNLLLVGSPGSGKTMLARRAPGLLPPLTRE
CCCCCCCCHHHHCCCHHHHHHEEEEEEECCCEEEEEECCCCCCEEHHHCCCCCCCCCCHH
EALEVTRIHSAAGLLTARSGLMGHPPYRAPHHTVSDAGLIGGGSVPRPGEVSLAHRGILF
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCEEHHHCCEEE
LDEFPEFSRKALETLRQPLEDGQVSISRARATVCYPARFQLIAAMNPCPCGHQGDPEKAC
ECCCCHHHHHHHHHHHHHHHCCCEEEECCCEEEEECHHEEEEEECCCCCCCCCCCCCCCE
TCTPSERSRYAARLSGPLLDRLDLIVRVPRLTVDELTRAPEAEKSEAVRQRVIRARAAML
ECCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHH
ARQGVRNSDLAGQMLRQHAPLAPGPEAFLRAAARQLNLTGRGFDRVLRVARTVADLAGSP
HHCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCC
DIREAHLAEAVTYRPRELT
CCHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MLARARSVALIGVDAVPVEVEVDVSPGLPAFTVVGLPDQAVSEARERVRAAVRNAGLPFP
CCCCCCEEEEEECCCEEEEEEEECCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCC
AARITVNLAPADLRKEGPLYDLPIALGLLAAQELLPAEALAGVLSAGELALDGSLRPIAG
CEEEEEEECCHHHHCCCCCEEHHHHHHHHHHHHHCCHHHHHHHHHCCCEEECCCCCHHHH
AVNLALRAAAEGCPVLIPEGNAGEAALIDGVTVHGAPSLLSAVRHLTGQAPLGRALPPEA
HHHHHHHHHCCCCCEEEECCCCCCEEEECCEEECCHHHHHHHHHHHCCCCCCCCCCCCCC
PPLDPTLPDLADLKGQTAAKRALEIAVAGGHNLLLVGSPGSGKTMLARRAPGLLPPLTRE
CCCCCCCCHHHHCCCHHHHHHEEEEEEECCCEEEEEECCCCCCEEHHHCCCCCCCCCCHH
EALEVTRIHSAAGLLTARSGLMGHPPYRAPHHTVSDAGLIGGGSVPRPGEVSLAHRGILF
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCEEHHHCCEEE
LDEFPEFSRKALETLRQPLEDGQVSISRARATVCYPARFQLIAAMNPCPCGHQGDPEKAC
ECCCCHHHHHHHHHHHHHHHCCCEEEECCCEEEEECHHEEEEEECCCCCCCCCCCCCCCE
TCTPSERSRYAARLSGPLLDRLDLIVRVPRLTVDELTRAPEAEKSEAVRQRVIRARAAML
ECCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHH
ARQGVRNSDLAGQMLRQHAPLAPGPEAFLRAAARQLNLTGRGFDRVLRVARTVADLAGSP
HHCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCC
DIREAHLAEAVTYRPRELT
CCHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1995430; 1379743; 9278503 [H]