| Definition | Deinococcus geothermalis DSM 11300 plasmid pDGEO01, complete sequence. |
|---|---|
| Accession | NC_008010 |
| Length | 574,127 |
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The map label for this gene is 94972292
Identifier: 94972292
GI number: 94972292
Start: 195815
End: 197959
Strand: Direct
Name: 94972292
Synonym: Dgeo_2829
Alternate gene names: NA
Gene position: 195815-197959 (Clockwise)
Preceding gene: 94972293
Following gene: 94972291
Centisome position: 34.11
GC content: 68.67
Gene sequence:
>2145_bases ATGAGTTATCCTGAATCCTCTACGCACCTCCAGCTGGGAGTGTGCGACTATCCCGAACACGTCTCCGAAGACCGTTGGCG CGCCTATGCCCGGCAGCAACGCGAGTTGGGTCTCCGCTTCGTTCGCCTCGCCGAGTTTGCCTGGAGCCGGATCGAGCCGC GCCCCGGCGAGTACGACTGGGACTGGCTGGACCGCGCCGTTGCGGCCTATGACGCCGAGGGGCTGCGGGTGGTCCTGTGT ACGCCCACCGCCACGCCGCCCGCCTGGCTGATCCGTGCTCATCCCGAAATCCTGCCGTACGACGCGCAGGGCCGGGTCCG CGAGTTCGGTTCGCGGCGGCACTACGATTTTGCCTCTCCCGTGTACCGCGAGCATTCCCGGCGCATCACCCGCGCGCTGG CCGAACGCTACGGCGAGCACCCGGCGGTCGTGGGCTGGCAGACCGACAACGAGTTTGCCTGCCACGGCACGGGCCGTTCG TACGGCGGGGCGAGTGCGGCGGCCTTTCCGGGCTGGCTCCGGCAGAAGTACGGCACGCTGGAGGCGCTCAACGCAGCCTG GGGCAACGTGTTCTGGAGCATGGAGTACAGCGACTGGGCACAGATTCGCCCGCCGGTCCTCACCGTCACCGAACCCAACC CTGCCCATGTGCTCGACTACTTCCGCTTCGCCTCCGACCTGATCCGCGACTTTCAAGCCGAGCAGGTCGCGATTCTGCGC GAGCGATCGCCGGGGCGCTTCGTCACCCACAACTTTATGATTTTCGAGTCGGGTTTTGACCACTACGCGGTCGCGCGCGC GCTCGACTTCGCGAGCTGGGACAACTACCCGACCGGGATGCTGGAATACTTCGCCCCTCCAGGAACGGGAGAGGACCTCA AGAACCGCTACGCCCGCACCGGGCACCCGGACCTGGTGGCGTTCAACCACGACTTGTACCGGGGCCTGACCGGCAAGCCG ATCTGGGTGATGGAGCAGCAGTGCGGGCAGGTGAACTGGGCCCCCTTCAATCCGCTCCCCGCTCCTGGGGCGGTCCAGCT CTGGACGGCCCAGGCTTGGGCCCACGGGGCGGATGTGGTGAGTTACTTCCGCTGGCGGGCCGCGACGATGGGCCAGGAGG TCCTGCACTCTGGCCTGCTGCGGCACGATGAGACGCCCGACCGGGGCTTTGCAGAAGTGCAGGCACTGGACACGGCCCAG TTTCCCCTTGGTGACGTTTCCGCCCGCGTCGCCCTGCTTCACGACTACGAGAGCCTGTGGCTCTACGACGCACAGCCGCA CAACGCGGCCCTGAGCTACTGGGCGCAGACGGTGACCTTCTACTCGGCCCTCCGCTCGCTGGGCGTGGACGTGGACATAG TCCGCACGAACACTGACCTGAGTGGCTACGCGGTCATCGTTGCGCCCGCCATCACCCTGGTCACGCCGGAGATGGCGGCG CGCTGGACCGCCGCGGTGGAAGCGGGGGCGCGCCTCGTCTGCGGACCGCGCACAGCCTTTCGCACGCCCTGTCGAGGGGC GACCGTTTCCGGCGACCCGTTGGGTCGAGGGGCGACCGTTTCCGGCGACCCGTTGGGTCGAGGGGCGACCGTTTCCGGCG ACCCGTTGGGTCGAGGGGCGACCGTTTCCGGCGACCCGTTGGGTCGAGGGGCGACCGTTTCCGGCGACCCGTTGGGTCGA GGGGCGACCGTTTCCGGCGACCCGTTGGGCGGCACCTGGGAGGACGGGCAGTTCGGCCCCCTGACGTCCCTGGTCGGCGC CCGACTCCTCCAATACGACGCGCTGCGTCCGGGTCTGACCCAGCCGGTCAGCGGCGGCTATAGCGCCCGCTTCTGGGCAG AGAGCTACCGCCTCCTGGGGGCACAGGCCACCCACACTTATCGGGGCGGCCCGCAGGACGGTCAACCCGCCGTCATCCAG CACGGCAATGTAACGGTGGTGGGTGCCTTCAGCGAGGCGCTGATCCGTGACGTGCTGCGCGGGGCGCTGGAGGCAGCCGG GGTGCCCATCACCGACCTGCCCGAAGGCGTGCGGCTCAGTCGCCGCGCCGGGGTGACGCTGGTACAGAACTGGACCGACG GGCCGGTGACCTGGCAGGGCCAAACGCTGCCACCCGTGAGTTTCGAGGTGCGGCATGACCTCTGA
Upstream 100 bases:
>100_bases TCTTGCCGCTCCTGCTCGCTTTTCTCAGCCTCGGCCGCTTCTGGCAAGGCGGCCTGTCCTCCGGCGCTGTGAAGGGCTGA GGCCTCATCAAGGACCCTGC
Downstream 100 bases:
>100_bases GCGGTCCTGGACCCTGCCCATCTCCCCTCATGAACTGCGGGTTCTCGTGAACGGCTACCAGTCGTGGAGCGAGGCGGAGC TGCGGGCGCTGCTGGACACG
Product: Beta-galactosidase
Products: NA
Alternate protein names: Beta-gal; Lactase [H]
Number of amino acids: Translated: 714; Mature: 713
Protein sequence:
>714_residues MSYPESSTHLQLGVCDYPEHVSEDRWRAYARQQRELGLRFVRLAEFAWSRIEPRPGEYDWDWLDRAVAAYDAEGLRVVLC TPTATPPAWLIRAHPEILPYDAQGRVREFGSRRHYDFASPVYREHSRRITRALAERYGEHPAVVGWQTDNEFACHGTGRS YGGASAAAFPGWLRQKYGTLEALNAAWGNVFWSMEYSDWAQIRPPVLTVTEPNPAHVLDYFRFASDLIRDFQAEQVAILR ERSPGRFVTHNFMIFESGFDHYAVARALDFASWDNYPTGMLEYFAPPGTGEDLKNRYARTGHPDLVAFNHDLYRGLTGKP IWVMEQQCGQVNWAPFNPLPAPGAVQLWTAQAWAHGADVVSYFRWRAATMGQEVLHSGLLRHDETPDRGFAEVQALDTAQ FPLGDVSARVALLHDYESLWLYDAQPHNAALSYWAQTVTFYSALRSLGVDVDIVRTNTDLSGYAVIVAPAITLVTPEMAA RWTAAVEAGARLVCGPRTAFRTPCRGATVSGDPLGRGATVSGDPLGRGATVSGDPLGRGATVSGDPLGRGATVSGDPLGR GATVSGDPLGGTWEDGQFGPLTSLVGARLLQYDALRPGLTQPVSGGYSARFWAESYRLLGAQATHTYRGGPQDGQPAVIQ HGNVTVVGAFSEALIRDVLRGALEAAGVPITDLPEGVRLSRRAGVTLVQNWTDGPVTWQGQTLPPVSFEVRHDL
Sequences:
>Translated_714_residues MSYPESSTHLQLGVCDYPEHVSEDRWRAYARQQRELGLRFVRLAEFAWSRIEPRPGEYDWDWLDRAVAAYDAEGLRVVLC TPTATPPAWLIRAHPEILPYDAQGRVREFGSRRHYDFASPVYREHSRRITRALAERYGEHPAVVGWQTDNEFACHGTGRS YGGASAAAFPGWLRQKYGTLEALNAAWGNVFWSMEYSDWAQIRPPVLTVTEPNPAHVLDYFRFASDLIRDFQAEQVAILR ERSPGRFVTHNFMIFESGFDHYAVARALDFASWDNYPTGMLEYFAPPGTGEDLKNRYARTGHPDLVAFNHDLYRGLTGKP IWVMEQQCGQVNWAPFNPLPAPGAVQLWTAQAWAHGADVVSYFRWRAATMGQEVLHSGLLRHDETPDRGFAEVQALDTAQ FPLGDVSARVALLHDYESLWLYDAQPHNAALSYWAQTVTFYSALRSLGVDVDIVRTNTDLSGYAVIVAPAITLVTPEMAA RWTAAVEAGARLVCGPRTAFRTPCRGATVSGDPLGRGATVSGDPLGRGATVSGDPLGRGATVSGDPLGRGATVSGDPLGR GATVSGDPLGGTWEDGQFGPLTSLVGARLLQYDALRPGLTQPVSGGYSARFWAESYRLLGAQATHTYRGGPQDGQPAVIQ HGNVTVVGAFSEALIRDVLRGALEAAGVPITDLPEGVRLSRRAGVTLVQNWTDGPVTWQGQTLPPVSFEVRHDL >Mature_713_residues SYPESSTHLQLGVCDYPEHVSEDRWRAYARQQRELGLRFVRLAEFAWSRIEPRPGEYDWDWLDRAVAAYDAEGLRVVLCT PTATPPAWLIRAHPEILPYDAQGRVREFGSRRHYDFASPVYREHSRRITRALAERYGEHPAVVGWQTDNEFACHGTGRSY GGASAAAFPGWLRQKYGTLEALNAAWGNVFWSMEYSDWAQIRPPVLTVTEPNPAHVLDYFRFASDLIRDFQAEQVAILRE RSPGRFVTHNFMIFESGFDHYAVARALDFASWDNYPTGMLEYFAPPGTGEDLKNRYARTGHPDLVAFNHDLYRGLTGKPI WVMEQQCGQVNWAPFNPLPAPGAVQLWTAQAWAHGADVVSYFRWRAATMGQEVLHSGLLRHDETPDRGFAEVQALDTAQF PLGDVSARVALLHDYESLWLYDAQPHNAALSYWAQTVTFYSALRSLGVDVDIVRTNTDLSGYAVIVAPAITLVTPEMAAR WTAAVEAGARLVCGPRTAFRTPCRGATVSGDPLGRGATVSGDPLGRGATVSGDPLGRGATVSGDPLGRGATVSGDPLGRG ATVSGDPLGGTWEDGQFGPLTSLVGARLLQYDALRPGLTQPVSGGYSARFWAESYRLLGAQATHTYRGGPQDGQPAVIQH GNVTVVGAFSEALIRDVLRGALEAAGVPITDLPEGVRLSRRAGVTLVQNWTDGPVTWQGQTLPPVSFEVRHDL
Specific function: Unknown
COG id: COG1874
COG function: function code G; Beta-galactosidase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyl hydrolase 42 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013739 - InterPro: IPR013738 - InterPro: IPR013780 - InterPro: IPR003476 - InterPro: IPR013529 - InterPro: IPR017853 - InterPro: IPR013781 [H]
Pfam domain/function: PF02449 Glyco_hydro_42; PF08533 Glyco_hydro_42C; PF08532 Glyco_hydro_42M [H]
EC number: =3.2.1.23 [H]
Molecular weight: Translated: 78475; Mature: 78344
Theoretical pI: Translated: 6.18; Mature: 6.18
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSYPESSTHLQLGVCDYPEHVSEDRWRAYARQQRELGLRFVRLAEFAWSRIEPRPGEYDW CCCCCCCCEEEEEECCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH DWLDRAVAAYDAEGLRVVLCTPTATPPAWLIRAHPEILPYDAQGRVREFGSRRHYDFASP HHHHHHHHHCCCCCCEEEEECCCCCCCCEEEECCCCEECCCCCCHHHHHCCCCCCCCCCH VYREHSRRITRALAERYGEHPAVVGWQTDNEFACHGTGRSYGGASAAAFPGWLRQKYGTL HHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCCCCCCCCCHHHCCHHHHHHHCHH EALNAAWGNVFWSMEYSDWAQIRPPVLTVTEPNPAHVLDYFRFASDLIRDFQAEQVAILR HHHHHHHCCEEEEEECCCHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHH ERSPGRFVTHNFMIFESGFDHYAVARALDFASWDNYPTGMLEYFAPPGTGEDLKNRYART CCCCCCEEEEEEEEEECCCCHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCHHHHHHHHCC GHPDLVAFNHDLYRGLTGKPIWVMEQQCGQVNWAPFNPLPAPGAVQLWTAQAWAHGADVV CCCCEEEECCHHHCCCCCCEEEEEHHHCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHH SYFRWRAATMGQEVLHSGLLRHDETPDRGFAEVQALDTAQFPLGDVSARVALLHDYESLW HHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCCHHHEEEEEECCCEEE LYDAQPHNAALSYWAQTVTFYSALRSLGVDVDIVRTNTDLSGYAVIVAPAITLVTPEMAA EEECCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCEEEEEECHHHHCCHHHHH RWTAAVEAGARLVCGPRTAFRTPCRGATVSGDPLGRGATVSGDPLGRGATVSGDPLGRGA HHHHHHHCCCEEEECCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC TVSGDPLGRGATVSGDPLGRGATVSGDPLGGTWEDGQFGPLTSLVGARLLQYDALRPGLT CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCC QPVSGGYSARFWAESYRLLGAQATHTYRGGPQDGQPAVIQHGNVTVVGAFSEALIRDVLR CCCCCCCCEEHHHHHHHHHCCCCCCCCCCCCCCCCCCEEECCCEEEEECHHHHHHHHHHH GALEAAGVPITDLPEGVRLSRRAGVTLVQNWTDGPVTWQGQTLPPVSFEVRHDL HHHHHCCCCCCCCCCCCCHHHHCCEEEEECCCCCCEEECCCCCCCCEEEECCCC >Mature Secondary Structure SYPESSTHLQLGVCDYPEHVSEDRWRAYARQQRELGLRFVRLAEFAWSRIEPRPGEYDW CCCCCCCEEEEEECCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH DWLDRAVAAYDAEGLRVVLCTPTATPPAWLIRAHPEILPYDAQGRVREFGSRRHYDFASP HHHHHHHHHCCCCCCEEEEECCCCCCCCEEEECCCCEECCCCCCHHHHHCCCCCCCCCCH VYREHSRRITRALAERYGEHPAVVGWQTDNEFACHGTGRSYGGASAAAFPGWLRQKYGTL HHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCCCCCCCCCHHHCCHHHHHHHCHH EALNAAWGNVFWSMEYSDWAQIRPPVLTVTEPNPAHVLDYFRFASDLIRDFQAEQVAILR HHHHHHHCCEEEEEECCCHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHH ERSPGRFVTHNFMIFESGFDHYAVARALDFASWDNYPTGMLEYFAPPGTGEDLKNRYART CCCCCCEEEEEEEEEECCCCHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCHHHHHHHHCC GHPDLVAFNHDLYRGLTGKPIWVMEQQCGQVNWAPFNPLPAPGAVQLWTAQAWAHGADVV CCCCEEEECCHHHCCCCCCEEEEEHHHCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHH SYFRWRAATMGQEVLHSGLLRHDETPDRGFAEVQALDTAQFPLGDVSARVALLHDYESLW HHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCCHHHEEEEEECCCEEE LYDAQPHNAALSYWAQTVTFYSALRSLGVDVDIVRTNTDLSGYAVIVAPAITLVTPEMAA EEECCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCEEEEEECHHHHCCHHHHH RWTAAVEAGARLVCGPRTAFRTPCRGATVSGDPLGRGATVSGDPLGRGATVSGDPLGRGA HHHHHHHCCCEEEECCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC TVSGDPLGRGATVSGDPLGRGATVSGDPLGGTWEDGQFGPLTSLVGARLLQYDALRPGLT CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCC QPVSGGYSARFWAESYRLLGAQATHTYRGGPQDGQPAVIQHGNVTVVGAFSEALIRDVLR CCCCCCCCEEHHHHHHHHHCCCCCCCCCCCCCCCCCCEEECCCEEEEECHHHHHHHHHHH GALEAAGVPITDLPEGVRLSRRAGVTLVQNWTDGPVTWQGQTLPPVSFEVRHDL HHHHHCCCCCCCCCCCCCHHHHCCEEEEECCCCCCEEECCCCCCCCEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9757561; 12215416 [H]