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The map label for this gene is yqhC [H]

Identifier: 94972265

GI number: 94972265

Start: 225154

End: 226251

Strand: Direct

Name: yqhC [H]

Synonym: Dgeo_2799

Alternate gene names: 94972265

Gene position: 225154-226251 (Clockwise)

Preceding gene: 94972266

Following gene: 94972264

Centisome position: 39.22

GC content: 63.39

Gene sequence:

>1098_bases
ATGACCCTGGTCTGTGACCCACCTGCTGCCCTGTCCCTGGAACTGGCGCGACTGCGCGAGCTGGTTGCTCGGCACGCCCT
CTATGATGCCGTCTTTACGACACGGGTGCCGGGCATCACCGTGGCCCGGTCGACCCGCACACATGAGGCGATGGAACACA
GCGTCCAGCAACCTGCCTTGTGTATCGTGGCTCAGGGCAACAAGAGCGTGCAGATTGGGGCTGAACAGTATACGTACAAC
CCCGACCGCATGCTGGTCTACGCCGTGAATCTGCCCACCGCCTTTTGGGTGACGGAAGCCAGTCCCAGTGCGCCGTTTTT
GACCGTTCGAGTCGATCTGGACCCCCAGTTCATCGCTGAGCTGGCCCTGAAGCTGTACCCACACGGCTTGCCCCGGCTTC
AAGACAGCCGAGGCGTGCAAATGACGGCAGCGGACCCCGCGATCATTCATGCCGCTGTCCACATCCTGGAAACGGCCGAG
AACGAGCGGGATGCCCGGTGGGTCGGGCCGATCATCTTGGACGAACTCCTGATGTGCCTCCTGCTCAGTCCGGTGGGGCC
AGTGGTCGCCCAGCTGGGGCGGGTGGACTCAGGCGCCCAGCGGGTGGCGCGGGCCATCGAATGGATCCAGGGCCATCTCG
ACAAACCGCTCAACATCAAGTTGCTGGCGGAGCGGGCGCACCTGGGTGTGTCGACCTTTTACGCGCATTTCAAAGCCGTG
GCGACGATGAGCCCGCTGCAATTTCAGAAGAATCTGCGTTTGCAGGAGGCGCGGAGATTGCTGCCGTCGACCTCGCTGGA
TGTAGGGGCCATCAGCCGCCAGGTCGGCTACGCCAGCGCGTCGCAGTTCAGCCGTGATTACAGCCGGTTGTTTGGCCGGA
CCCCCCGCACAGAGATGACCCAGGGACGGGCACGGCCCAGCGGCCTAGAGGGAGGGCACAATGGGCGCAAGATCAAGCCA
TACGGGAAACAGGCCGGATCAAAACGGGGAAAGTGGCGCGAGGGAAGAGCGCCAGGAGAGCGCAGAGAACAAGAGGGGGA
AGGTCCGCGAGCGGTTCTGGGGGGAAACACCAGATGGCCGCAGCATCACCCTCTATGA

Upstream 100 bases:

>100_bases
CGGCCATGACCCACATCGCCATCCAGGAAGCCCAGGACGGTCAAGCGGTGGAGTGGCTTGAACATGTGACCGACGAGCAG
TATCCAGGCGGAGAGAGGGC

Downstream 100 bases:

>100_bases
ACTGGAGACCGCAGGCGGCCTACGGGCCGAGATCATGACCTACGGGGGGGTGCTGGTCCGTCTCCTCACCCCCGACCGAC
ACGGCATTCCCGGCGACATC

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 365; Mature: 364

Protein sequence:

>365_residues
MTLVCDPPAALSLELARLRELVARHALYDAVFTTRVPGITVARSTRTHEAMEHSVQQPALCIVAQGNKSVQIGAEQYTYN
PDRMLVYAVNLPTAFWVTEASPSAPFLTVRVDLDPQFIAELALKLYPHGLPRLQDSRGVQMTAADPAIIHAAVHILETAE
NERDARWVGPIILDELLMCLLLSPVGPVVAQLGRVDSGAQRVARAIEWIQGHLDKPLNIKLLAERAHLGVSTFYAHFKAV
ATMSPLQFQKNLRLQEARRLLPSTSLDVGAISRQVGYASASQFSRDYSRLFGRTPRTEMTQGRARPSGLEGGHNGRKIKP
YGKQAGSKRGKWREGRAPGERREQEGEGPRAVLGGNTRWPQHHPL

Sequences:

>Translated_365_residues
MTLVCDPPAALSLELARLRELVARHALYDAVFTTRVPGITVARSTRTHEAMEHSVQQPALCIVAQGNKSVQIGAEQYTYN
PDRMLVYAVNLPTAFWVTEASPSAPFLTVRVDLDPQFIAELALKLYPHGLPRLQDSRGVQMTAADPAIIHAAVHILETAE
NERDARWVGPIILDELLMCLLLSPVGPVVAQLGRVDSGAQRVARAIEWIQGHLDKPLNIKLLAERAHLGVSTFYAHFKAV
ATMSPLQFQKNLRLQEARRLLPSTSLDVGAISRQVGYASASQFSRDYSRLFGRTPRTEMTQGRARPSGLEGGHNGRKIKP
YGKQAGSKRGKWREGRAPGERREQEGEGPRAVLGGNTRWPQHHPL
>Mature_364_residues
TLVCDPPAALSLELARLRELVARHALYDAVFTTRVPGITVARSTRTHEAMEHSVQQPALCIVAQGNKSVQIGAEQYTYNP
DRMLVYAVNLPTAFWVTEASPSAPFLTVRVDLDPQFIAELALKLYPHGLPRLQDSRGVQMTAADPAIIHAAVHILETAEN
ERDARWVGPIILDELLMCLLLSPVGPVVAQLGRVDSGAQRVARAIEWIQGHLDKPLNIKLLAERAHLGVSTFYAHFKAVA
TMSPLQFQKNLRLQEARRLLPSTSLDVGAISRQVGYASASQFSRDYSRLFGRTPRTEMTQGRARPSGLEGGHNGRKIKPY
GKQAGSKRGKWREGRAPGERREQEGEGPRAVLGGNTRWPQHHPL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082197, Length=250, Percent_Identity=30.8, Blast_Score=119, Evalue=4e-28,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018060
- InterPro:   IPR009594 [H]

Pfam domain/function: PF06719 AraC_N; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 40310; Mature: 40179

Theoretical pI: Translated: 10.17; Mature: 10.17

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLVCDPPAALSLELARLRELVARHALYDAVFTTRVPGITVARSTRTHEAMEHSVQQPAL
CEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHCCCCEE
CIVAQGNKSVQIGAEQYTYNPDRMLVYAVNLPTAFWVTEASPSAPFLTVRVDLDPQFIAE
EEEECCCCEEEECHHHEEECCCCEEEEEEECCEEEEEECCCCCCCEEEEEECCCHHHHHH
LALKLYPHGLPRLQDSRGVQMTAADPAIIHAAVHILETAENERDARWVGPIILDELLMCL
HHHHHCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
LLSPVGPVVAQLGRVDSGAQRVARAIEWIQGHLDKPLNIKLLAERAHLGVSTFYAHFKAV
HHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHCCHHHHHHHHHHH
ATMSPLQFQKNLRLQEARRLLPSTSLDVGAISRQVGYASASQFSRDYSRLFGRTPRTEMT
HHCCHHHHHHCCCHHHHHHHCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHH
QGRARPSGLEGGHNGRKIKPYGKQAGSKRGKWREGRAPGERREQEGEGPRAVLGGNTRWP
HCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCHHHHHCCCCCEEEECCCCCCC
QHHPL
CCCCC
>Mature Secondary Structure 
TLVCDPPAALSLELARLRELVARHALYDAVFTTRVPGITVARSTRTHEAMEHSVQQPAL
EEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHCCCCEE
CIVAQGNKSVQIGAEQYTYNPDRMLVYAVNLPTAFWVTEASPSAPFLTVRVDLDPQFIAE
EEEECCCCEEEECHHHEEECCCCEEEEEEECCEEEEEECCCCCCCEEEEEECCCHHHHHH
LALKLYPHGLPRLQDSRGVQMTAADPAIIHAAVHILETAENERDARWVGPIILDELLMCL
HHHHHCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
LLSPVGPVVAQLGRVDSGAQRVARAIEWIQGHLDKPLNIKLLAERAHLGVSTFYAHFKAV
HHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHCCHHHHHHHHHHH
ATMSPLQFQKNLRLQEARRLLPSTSLDVGAISRQVGYASASQFSRDYSRLFGRTPRTEMT
HHCCHHHHHHCCCHHHHHHHCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHH
QGRARPSGLEGGHNGRKIKPYGKQAGSKRGKWREGRAPGERREQEGEGPRAVLGGNTRWP
HCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCHHHHHCCCCCEEEECCCCCCC
QHHPL
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]