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The map label for this gene is yfdE [H]

Identifier: 94312738

GI number: 94312738

Start: 348568

End: 349860

Strand: Direct

Name: yfdE [H]

Synonym: Rmet_3808

Alternate gene names: 94312738

Gene position: 348568-349860 (Clockwise)

Preceding gene: 94312737

Following gene: 94312741

Centisome position: 13.51

GC content: 65.51

Gene sequence:

>1293_bases
ATGACGACACCCTCCGATTCGACCACCGGCCTGCCGCTGCCGTCCCGGCAGACCGGCGCCTTGAGCCATATCCGCGTGCT
GGATCTATCGCGTGTGCTGGCTGGGCCGTGGTGCACGCAGAACCTCGCCGACATGGGCGCGGACGTGATCAAGGTCGAGA
AGCCCGGCGCGGGGGATGACACCCGGCACTGGGGGCCTCCGTATCTGCAAGACGAAGATGGGCCCACGAGCCAGGCGAGC
TACTTTGCCGCGTGCAATCGCAACAAGCGCTCGGTGACGATCGACATCGCCAAGCCGGAAGGGCAGAAGCTGATCCGTGA
ACTGGCGATGCAGAGCGACGTGGTCATCGAGAACTACAAGACCGGTGGCCTCAAGCGCTACGGGCTCGACTACGACTCGC
TCAGCGCGCTGAATCCGCGCCTGATCTACTGCTCGGTCACGGGTTTCGGTCAGACCGGTCCTTACGCGGCACGTCCCGGC
TATGACCTGCTGATCCAGGCCATGAGCGGCCTGATGAGCATCACTGGCCAGGCCGACGGAGAGCCTGGCGCGGGCCCGGT
ACGCGTGGGCGTCGCCGTGATCGACGTGTTCACGGGCATGTACGCGACCACGGCCATTCTTGGCGCGCTGGAGGCACGGC
ACTTCACCGGCCGAGGCCAGCATATCGATGTCGCGCTGCTCGACGTTGCCATGGCGGTCCTGGCGAATCAGGGCGCGGGA
TACCTGAACGCGGGTGTCGTGCCGACCCGCCAGGGCAACACGCACCCGAGCGTCGTGCCGTATCAGGATTTCCCGACGCA
GGACGGCGACATGTTGCTTGCCATCGGCAACGACGGCCAGTTCGTGCGCTTCTGCGAAGCCGCCGATGTCGACTGGGCGC
GCGACGAGCGGTTCGCTACCAACAGCGCCCGGGTCACACATCGCCGGACGCTGATTCCGATGATGAGCGAGGTCACGCGG
ACCCGGCCGACCAGCGAATGGATTCGTCTGCTGGAGGCTGCGTCAGTGCCTTGCGGTCCGATCAACGATATCGCCCAGGC
ATTTGCCGACGAGCATGTCCAGCATCGCGGACTGCGCGTTGAGCAGGAGCGTTACGGGGAGGCAGGATGTCCCCCGTCGG
ATAGCGTGAACCGGATCTGCAGCACGGCCAGTCCGCTGAGGCTGTCGGAGACGCCCACGACGGTGCGTTACGCGCCACCG
GGGCTCGGCCAACATACGGACGAGGTGCTGCGCGACAATCTCAAGCTTGGTTCCGACGAAGTCGCGGACTTGCGCGCCAA
GGGCATTCTGTAA

Upstream 100 bases:

>100_bases
AGCCGAACCAGTTCCAGTTGCGCGCCAAGGTGCTGGAGCGCGACAAGGTCGTGCTCAGCCATGGCTGGGCGGAGATCGCC
TGAATATCCAACGAATTACC

Downstream 100 bases:

>100_bases
AACAAGCCTTAAAAAAACCGGCAGTGCAAGGCACTGCCGGTTTTCTTGCGTGGTGCTAGATCGCCCCTTGCTGGCGTAGC
GCTTCCAGTTGCGCCGCGGT

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 430; Mature: 429

Protein sequence:

>430_residues
MTTPSDSTTGLPLPSRQTGALSHIRVLDLSRVLAGPWCTQNLADMGADVIKVEKPGAGDDTRHWGPPYLQDEDGPTSQAS
YFAACNRNKRSVTIDIAKPEGQKLIRELAMQSDVVIENYKTGGLKRYGLDYDSLSALNPRLIYCSVTGFGQTGPYAARPG
YDLLIQAMSGLMSITGQADGEPGAGPVRVGVAVIDVFTGMYATTAILGALEARHFTGRGQHIDVALLDVAMAVLANQGAG
YLNAGVVPTRQGNTHPSVVPYQDFPTQDGDMLLAIGNDGQFVRFCEAADVDWARDERFATNSARVTHRRTLIPMMSEVTR
TRPTSEWIRLLEAASVPCGPINDIAQAFADEHVQHRGLRVEQERYGEAGCPPSDSVNRICSTASPLRLSETPTTVRYAPP
GLGQHTDEVLRDNLKLGSDEVADLRAKGIL

Sequences:

>Translated_430_residues
MTTPSDSTTGLPLPSRQTGALSHIRVLDLSRVLAGPWCTQNLADMGADVIKVEKPGAGDDTRHWGPPYLQDEDGPTSQAS
YFAACNRNKRSVTIDIAKPEGQKLIRELAMQSDVVIENYKTGGLKRYGLDYDSLSALNPRLIYCSVTGFGQTGPYAARPG
YDLLIQAMSGLMSITGQADGEPGAGPVRVGVAVIDVFTGMYATTAILGALEARHFTGRGQHIDVALLDVAMAVLANQGAG
YLNAGVVPTRQGNTHPSVVPYQDFPTQDGDMLLAIGNDGQFVRFCEAADVDWARDERFATNSARVTHRRTLIPMMSEVTR
TRPTSEWIRLLEAASVPCGPINDIAQAFADEHVQHRGLRVEQERYGEAGCPPSDSVNRICSTASPLRLSETPTTVRYAPP
GLGQHTDEVLRDNLKLGSDEVADLRAKGIL
>Mature_429_residues
TTPSDSTTGLPLPSRQTGALSHIRVLDLSRVLAGPWCTQNLADMGADVIKVEKPGAGDDTRHWGPPYLQDEDGPTSQASY
FAACNRNKRSVTIDIAKPEGQKLIRELAMQSDVVIENYKTGGLKRYGLDYDSLSALNPRLIYCSVTGFGQTGPYAARPGY
DLLIQAMSGLMSITGQADGEPGAGPVRVGVAVIDVFTGMYATTAILGALEARHFTGRGQHIDVALLDVAMAVLANQGAGY
LNAGVVPTRQGNTHPSVVPYQDFPTQDGDMLLAIGNDGQFVRFCEAADVDWARDERFATNSARVTHRRTLIPMMSEVTRT
RPTSEWIRLLEAASVPCGPINDIAQAFADEHVQHRGLRVEQERYGEAGCPPSDSVNRICSTASPLRLSETPTTVRYAPPG
LGQHTDEVLRDNLKLGSDEVADLRAKGIL

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=411, Percent_Identity=41.3625304136253, Blast_Score=330, Evalue=2e-90,
Organism=Homo sapiens, GI300863124, Length=437, Percent_Identity=39.1304347826087, Blast_Score=316, Evalue=2e-86,
Organism=Homo sapiens, GI300863126, Length=411, Percent_Identity=35.7664233576642, Blast_Score=270, Evalue=1e-72,
Organism=Homo sapiens, GI13376042, Length=437, Percent_Identity=35.6979405034325, Blast_Score=269, Evalue=5e-72,
Organism=Homo sapiens, GI266456254, Length=422, Percent_Identity=25.1184834123223, Blast_Score=123, Evalue=4e-28,
Organism=Homo sapiens, GI42794625, Length=422, Percent_Identity=25.1184834123223, Blast_Score=122, Evalue=4e-28,
Organism=Homo sapiens, GI266458397, Length=209, Percent_Identity=32.5358851674641, Blast_Score=108, Evalue=9e-24,
Organism=Homo sapiens, GI266458393, Length=232, Percent_Identity=31.0344827586207, Blast_Score=108, Evalue=9e-24,
Organism=Homo sapiens, GI266458395, Length=151, Percent_Identity=34.4370860927152, Blast_Score=96, Evalue=9e-20,
Organism=Homo sapiens, GI42822893, Length=151, Percent_Identity=34.4370860927152, Blast_Score=95, Evalue=2e-19,
Organism=Escherichia coli, GI87082093, Length=348, Percent_Identity=36.4942528735632, Blast_Score=240, Evalue=1e-64,
Organism=Escherichia coli, GI1788717, Length=435, Percent_Identity=29.4252873563218, Blast_Score=168, Evalue=8e-43,
Organism=Escherichia coli, GI1786222, Length=240, Percent_Identity=30.8333333333333, Blast_Score=91, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI115535051, Length=329, Percent_Identity=26.1398176291793, Blast_Score=91, Evalue=8e-19,
Organism=Caenorhabditis elegans, GI32564160, Length=227, Percent_Identity=29.5154185022026, Blast_Score=86, Evalue=3e-17,
Organism=Drosophila melanogaster, GI24648431, Length=411, Percent_Identity=47.4452554744526, Blast_Score=362, Evalue=1e-100,
Organism=Drosophila melanogaster, GI24585488, Length=418, Percent_Identity=24.4019138755981, Blast_Score=105, Evalue=4e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 46361; Mature: 46230

Theoretical pI: Translated: 5.44; Mature: 5.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTPSDSTTGLPLPSRQTGALSHIRVLDLSRVLAGPWCTQNLADMGADVIKVEKPGAGDD
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCEEEEECCCCCCC
TRHWGPPYLQDEDGPTSQASYFAACNRNKRSVTIDIAKPEGQKLIRELAMQSDVVIENYK
CCCCCCCCCCCCCCCCCHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHCCCEEEEECC
TGGLKRYGLDYDSLSALNPRLIYCSVTGFGQTGPYAARPGYDLLIQAMSGLMSITGQADG
CCCEEEECCCHHHHHCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHEECCCCCC
EPGAGPVRVGVAVIDVFTGMYATTAILGALEARHFTGRGQHIDVALLDVAMAVLANQGAG
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHCCCCC
YLNAGVVPTRQGNTHPSVVPYQDFPTQDGDMLLAIGNDGQFVRFCEAADVDWARDERFAT
CEECCEEECCCCCCCCCEECCCCCCCCCCCEEEEECCCCCEEEEECCCCCCCCCCCHHCC
NSARVTHRRTLIPMMSEVTRTRPTSEWIRLLEAASVPCGPINDIAQAFADEHVQHRGLRV
CCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCEE
EQERYGEAGCPPSDSVNRICSTASPLRLSETPTTVRYAPPGLGQHTDEVLRDNLKLGSDE
CHHHCCCCCCCCCHHHHHHHCCCCCCEECCCCCEEEECCCCCCCHHHHHHHHHHCCCCCH
VADLRAKGIL
HHHHHHCCCC
>Mature Secondary Structure 
TTPSDSTTGLPLPSRQTGALSHIRVLDLSRVLAGPWCTQNLADMGADVIKVEKPGAGDD
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCEEEEECCCCCCC
TRHWGPPYLQDEDGPTSQASYFAACNRNKRSVTIDIAKPEGQKLIRELAMQSDVVIENYK
CCCCCCCCCCCCCCCCCHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHCCCEEEEECC
TGGLKRYGLDYDSLSALNPRLIYCSVTGFGQTGPYAARPGYDLLIQAMSGLMSITGQADG
CCCEEEECCCHHHHHCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHEECCCCCC
EPGAGPVRVGVAVIDVFTGMYATTAILGALEARHFTGRGQHIDVALLDVAMAVLANQGAG
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHCCCCC
YLNAGVVPTRQGNTHPSVVPYQDFPTQDGDMLLAIGNDGQFVRFCEAADVDWARDERFAT
CEECCEEECCCCCCCCCEECCCCCCCCCCCEEEEECCCCCEEEEECCCCCCCCCCCHHCC
NSARVTHRRTLIPMMSEVTRTRPTSEWIRLLEAASVPCGPINDIAQAFADEHVQHRGLRV
CCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCEE
EQERYGEAGCPPSDSVNRICSTASPLRLSETPTTVRYAPPGLGQHTDEVLRDNLKLGSDE
CHHHCCCCCCCCCHHHHHHHCCCCCCEECCCCCEEEECCCCCCCHHHHHHHHHHCCCCCH
VADLRAKGIL
HHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]