Click here to switch to the map view.

The map label for this gene is vioD [H]

Identifier: 94312709

GI number: 94312709

Start: 315727

End: 316887

Strand: Direct

Name: vioD [H]

Synonym: Rmet_3779

Alternate gene names: 94312709

Gene position: 315727-316887 (Clockwise)

Preceding gene: 94312708

Following gene: 94312710

Centisome position: 12.24

GC content: 61.07

Gene sequence:

>1161_bases
ATGAAGGTGGCGATCATTGGCGGCGGACCGTCGGGGCTGTTCCTGTCGATCCTGCTCAAGGAGCGGATGGCGCAGGTCGA
CATCGATGTGTTCGAGCAGAACCCGGAGGATGCGACGTTTGGCTTCGGCGTTGTCCTGGCCGACACAGGCCTGTCGAATC
TTCGGGCAGCTTCGCCGATCGTGGTGGACCGCCTGGCCAAGGCCATGCGGTTCAACGACCAGCATTCGATCGTCAGTCAC
GAGCATCCCATAGTCATGAGGAAGCCCGGTGCAGGTGGTGGTGCCATTCCCCGCATCAGTCTGCTGTCTGTACTGCAACA
GCGCGCAAAAGAGCTTGGCGTACGGGTGACGTACAACAAGCGCATTGCCGATTTCGATGCGCTCGATGCCGACCTCGTCG
TCGGGGCGGACGGCATCGGCTCGCAATTGCGTACCGCCAATGAAGCGGCCTTTGGCACGACGCGCCGCACACTGACGAAT
CACTTCGCCTGGTTCGGCGTGGCAAAGCCCTTTGCGAGTCCGGCTCTGGTGTTTCGCAAGTACGAGGGCGGCTACTTTGT
GGCCCATTACTACCCGTACTCCGATTCGATGAGCACATTCGTGGCCGAGTGCGACCACCAGACCTGGGTCGACTTCGGCA
TGGAAGACATGAGCGCCGAAGCGCGGCAAGCGCTCTTCGAGACGGTGTTTGCCCCGGAGCTGACTGGCCACGGATTGGTT
TCGAACAATTCGATCTGGCGACAGTTCCCGGTGATCCTCAATGCCAACTGGCATGTCGGCAAGCAGGTCCTGATTGGCGA
TGCACTGACCAGTGCGCATTTCTCGATCGGATCTGGCACCCGGATTGCGATGGAGGATGCCATGGCGTTGGCGGACGCCA
TCGTGACGCACCCGGACGATGTACCGGCTGCGCTGGAGCAGTACGAAGCCGTGCGCAAACCGGAGAAGGCCAAGCTGATC
AGCGCTTCAGAGGCGTCGTATAACTGGTACGAGCGCATTCGGGAATGGATGGATCTTCCCACGCCGCACGAGTTCGTGTT
TCGCTTTATGACGCGTACCGGCCGTATTGACGCGGAACGTCTGCGGGCTCAGTTTCCGGCGTTGATGGCCGAGCTGGCTG
CCGGCGGGGTGGCAGCCGTGGCGGCAGAAGGGCAATCATGA

Upstream 100 bases:

>100_bases
TCAAGCCGGCGGTCTGGTACGGGGCGCTGACCGGCGGCCTGGCAGGCAGCATTCGACAATTTGACATGGATGCGCTCGTG
GTGGCTCCGGGAGATACGCA

Downstream 100 bases:

>100_bases
TGCGCGCCACGGAGTACGTGCTGAGCGAAAGTCCGTTCGTGGTCAGGCGTACCGTGCGTTGGGGAGATTGCGACCCGGCA
GGCGTCGTCTACACAGGCCG

Product: putative monooxygenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 386; Mature: 386

Protein sequence:

>386_residues
MKVAIIGGGPSGLFLSILLKERMAQVDIDVFEQNPEDATFGFGVVLADTGLSNLRAASPIVVDRLAKAMRFNDQHSIVSH
EHPIVMRKPGAGGGAIPRISLLSVLQQRAKELGVRVTYNKRIADFDALDADLVVGADGIGSQLRTANEAAFGTTRRTLTN
HFAWFGVAKPFASPALVFRKYEGGYFVAHYYPYSDSMSTFVAECDHQTWVDFGMEDMSAEARQALFETVFAPELTGHGLV
SNNSIWRQFPVILNANWHVGKQVLIGDALTSAHFSIGSGTRIAMEDAMALADAIVTHPDDVPAALEQYEAVRKPEKAKLI
SASEASYNWYERIREWMDLPTPHEFVFRFMTRTGRIDAERLRAQFPALMAELAAGGVAAVAAEGQS

Sequences:

>Translated_386_residues
MKVAIIGGGPSGLFLSILLKERMAQVDIDVFEQNPEDATFGFGVVLADTGLSNLRAASPIVVDRLAKAMRFNDQHSIVSH
EHPIVMRKPGAGGGAIPRISLLSVLQQRAKELGVRVTYNKRIADFDALDADLVVGADGIGSQLRTANEAAFGTTRRTLTN
HFAWFGVAKPFASPALVFRKYEGGYFVAHYYPYSDSMSTFVAECDHQTWVDFGMEDMSAEARQALFETVFAPELTGHGLV
SNNSIWRQFPVILNANWHVGKQVLIGDALTSAHFSIGSGTRIAMEDAMALADAIVTHPDDVPAALEQYEAVRKPEKAKLI
SASEASYNWYERIREWMDLPTPHEFVFRFMTRTGRIDAERLRAQFPALMAELAAGGVAAVAAEGQS
>Mature_386_residues
MKVAIIGGGPSGLFLSILLKERMAQVDIDVFEQNPEDATFGFGVVLADTGLSNLRAASPIVVDRLAKAMRFNDQHSIVSH
EHPIVMRKPGAGGGAIPRISLLSVLQQRAKELGVRVTYNKRIADFDALDADLVVGADGIGSQLRTANEAAFGTTRRTLTN
HFAWFGVAKPFASPALVFRKYEGGYFVAHYYPYSDSMSTFVAECDHQTWVDFGMEDMSAEARQALFETVFAPELTGHGLV
SNNSIWRQFPVILNANWHVGKQVLIGDALTSAHFSIGSGTRIAMEDAMALADAIVTHPDDVPAALEQYEAVRKPEKAKLI
SASEASYNWYERIREWMDLPTPHEFVFRFMTRTGRIDAERLRAQFPALMAELAAGGVAAVAAEGQS

Specific function: Unknown

COG id: COG0654

COG function: function code HC; 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 42250; Mature: 42250

Theoretical pI: Translated: 5.97; Mature: 5.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVAIIGGGPSGLFLSILLKERMAQVDIDVFEQNPEDATFGFGVVLADTGLSNLRAASPI
CEEEEECCCCHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCEEEEEEECCCCHHHHCCCHH
VVDRLAKAMRFNDQHSIVSHEHPIVMRKPGAGGGAIPRISLLSVLQQRAKELGVRVTYNK
HHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHCCEEEEECC
RIADFDALDADLVVGADGIGSQLRTANEAAFGTTRRTLTNHFAWFGVAKPFASPALVFRK
CCCCCCCCCCCEEECCCCCCHHHHHCCHHHCCCHHHHHHHHHHHHHHHCCCCCCEEEEEE
YEGGYFVAHYYPYSDSMSTFVAECDHQTWVDFGMEDMSAEARQALFETVFAPELTGHGLV
ECCCEEEEEEECCCCCHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCEE
SNNSIWRQFPVILNANWHVGKQVLIGDALTSAHFSIGSGTRIAMEDAMALADAIVTHPDD
CCCCCCEEECEEEECCCCCCCEEEEEHHHHHCCEECCCCCEEHHHHHHHHHHHHHCCCCC
VPAALEQYEAVRKPEKAKLISASEASYNWYERIREWMDLPTPHEFVFRFMTRTGRIDAER
CHHHHHHHHHHCCCCHHHEEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHH
LRAQFPALMAELAAGGVAAVAAEGQS
HHHHHHHHHHHHHCCCEEEEECCCCC
>Mature Secondary Structure
MKVAIIGGGPSGLFLSILLKERMAQVDIDVFEQNPEDATFGFGVVLADTGLSNLRAASPI
CEEEEECCCCHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCEEEEEEECCCCHHHHCCCHH
VVDRLAKAMRFNDQHSIVSHEHPIVMRKPGAGGGAIPRISLLSVLQQRAKELGVRVTYNK
HHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHCCEEEEECC
RIADFDALDADLVVGADGIGSQLRTANEAAFGTTRRTLTNHFAWFGVAKPFASPALVFRK
CCCCCCCCCCCEEECCCCCCHHHHHCCHHHCCCHHHHHHHHHHHHHHHCCCCCCEEEEEE
YEGGYFVAHYYPYSDSMSTFVAECDHQTWVDFGMEDMSAEARQALFETVFAPELTGHGLV
ECCCEEEEEEECCCCCHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCEE
SNNSIWRQFPVILNANWHVGKQVLIGDALTSAHFSIGSGTRIAMEDAMALADAIVTHPDD
CCCCCCEEECEEEECCCCCCCEEEEEHHHHHCCEECCCCCEEHHHHHHHHHHHHHCCCCC
VPAALEQYEAVRKPEKAKLISASEASYNWYERIREWMDLPTPHEFVFRFMTRTGRIDAER
CHHHHHHHHHHCCCCHHHEEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHH
LRAQFPALMAELAAGGVAAVAAEGQS
HHHHHHHHHHHHHCCCEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11075927; 14500782 [H]