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The map label for this gene is fliA [H]

Identifier: 94312634

GI number: 94312634

Start: 244062

End: 244778

Strand: Direct

Name: fliA [H]

Synonym: Rmet_3702

Alternate gene names: 94312634

Gene position: 244062-244778 (Clockwise)

Preceding gene: 94312633

Following gene: 94312635

Centisome position: 9.46

GC content: 62.34

Gene sequence:

>717_bases
ATGTACACGATTCAGGGAAAGCTCGAACAGGCAGACGTGGTCAAGTCGCACGCGCCGCTGGTGCGACGCATCGCGTTGCA
GCTGGCGGCGAAGCTGCCGGCCAGCGTGCAGATCGACGACCTGATCCAGGCCGGCATGATCGGCCTGCTCGACGCCGCCA
AGCGCTACGAGGACAACCATGGCGCGCGATTCGAGACCTATGCGAGCCAGCGCATTCGCGGCGCTATGCTCGACGAGGTG
CGCGCCAACGATTGGCAATCGCGCAGTCTGCGCCAGTTCACACGCAAGATCGAACGCACGCAGCGCCAGCTCGAGCAGAA
ACTCGGCCGGAGCCCCATCGACTCCGAAGTGGCGAAGGAACTCGAAATGGGGCTGGAGGAGTATCAGGAACTGCTCAACG
AAGTCCATGGCTGCCAGTTGCTGCACTATGAGGACTTCGAACGTTCCGGGGAAGAAGACTTCCTGGATCGGCACCTTGGG
GTGACCGACGAAGCGAATCCGCTCACGGTGCTGATGGAATCGGGAATGCGTGACGCGCTGATCCGCGCCATCGAGAAGCT
GCCCGAGCGCGAGAAGCTGGTGCTCTCGCTTTGCTACGACCAGGAGTTGAACCTGCGTGAGATCGGGGCCGTGCTGGAAG
TGACCGAATCGCGCGTCTGCCAGATCCGTAGCCAGGCCATTACGCGGCTGCGCAACCAGCTTCGCGGCATGTTGTGA

Upstream 100 bases:

>100_bases
ACAAGAAGTCGACAAGACCGGACACCGAGCCAGACAGTCAGCCGCGGCCATGCTTGCGCGGCGCTGGCACCGATAGAAAG
CATTTACCGAGAGTTCCACC

Downstream 100 bases:

>100_bases
TGCGTCATCTTCTGGCATTCGCGTTGTGTCTTTGTCTGGCCCCCACATGGGTCGACGCGCAGACATACGTGCGCGCCACC
TACGAGCTCAGTGGGTCGCG

Product: RNA polymerase sigma 28 (sigma F) factor

Products: NA

Alternate protein names: Sigma-27; Sigma-28; Sigma-F factor [H]

Number of amino acids: Translated: 238; Mature: 238

Protein sequence:

>238_residues
MYTIQGKLEQADVVKSHAPLVRRIALQLAAKLPASVQIDDLIQAGMIGLLDAAKRYEDNHGARFETYASQRIRGAMLDEV
RANDWQSRSLRQFTRKIERTQRQLEQKLGRSPIDSEVAKELEMGLEEYQELLNEVHGCQLLHYEDFERSGEEDFLDRHLG
VTDEANPLTVLMESGMRDALIRAIEKLPEREKLVLSLCYDQELNLREIGAVLEVTESRVCQIRSQAITRLRNQLRGML

Sequences:

>Translated_238_residues
MYTIQGKLEQADVVKSHAPLVRRIALQLAAKLPASVQIDDLIQAGMIGLLDAAKRYEDNHGARFETYASQRIRGAMLDEV
RANDWQSRSLRQFTRKIERTQRQLEQKLGRSPIDSEVAKELEMGLEEYQELLNEVHGCQLLHYEDFERSGEEDFLDRHLG
VTDEANPLTVLMESGMRDALIRAIEKLPEREKLVLSLCYDQELNLREIGAVLEVTESRVCQIRSQAITRLRNQLRGML
>Mature_238_residues
MYTIQGKLEQADVVKSHAPLVRRIALQLAAKLPASVQIDDLIQAGMIGLLDAAKRYEDNHGARFETYASQRIRGAMLDEV
RANDWQSRSLRQFTRKIERTQRQLEQKLGRSPIDSEVAKELEMGLEEYQELLNEVHGCQLLHYEDFERSGEEDFLDRHLG
VTDEANPLTVLMESGMRDALIRAIEKLPEREKLVLSLCYDQELNLREIGAVLEVTESRVCQIRSQAITRLRNQLRGML

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This alternative sigma factor is specific for class 3 flagellar operons [H]

COG id: COG1191

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family [H]

Homologues:

Organism=Escherichia coli, GI1788231, Length=238, Percent_Identity=49.1596638655462, Blast_Score=214, Evalue=4e-57,
Organism=Escherichia coli, GI1789448, Length=229, Percent_Identity=28.82096069869, Blast_Score=72, Evalue=2e-14,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000943
- InterPro:   IPR007627
- InterPro:   IPR007624
- InterPro:   IPR007630
- InterPro:   IPR012845
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF04539 Sigma70_r3; PF04545 Sigma70_r4 [H]

EC number: NA

Molecular weight: Translated: 27345; Mature: 27345

Theoretical pI: Translated: 5.26; Mature: 5.26

Prosite motif: PS00715 SIGMA70_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYTIQGKLEQADVVKSHAPLVRRIALQLAAKLPASVQIDDLIQAGMIGLLDAAKRYEDNH
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCC
GARFETYASQRIRGAMLDEVRANDWQSRSLRQFTRKIERTQRQLEQKLGRSPIDSEVAKE
CCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
LEMGLEEYQELLNEVHGCQLLHYEDFERSGEEDFLDRHLGVTDEANPLTVLMESGMRDAL
HHHHHHHHHHHHHHHHCCEEEEHHHHHHCCCHHHHHHHCCCCCCCCHHHHHHHCCHHHHH
IRAIEKLPEREKLVLSLCYDQELNLREIGAVLEVTESRVCQIRSQAITRLRNQLRGML
HHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MYTIQGKLEQADVVKSHAPLVRRIALQLAAKLPASVQIDDLIQAGMIGLLDAAKRYEDNH
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCC
GARFETYASQRIRGAMLDEVRANDWQSRSLRQFTRKIERTQRQLEQKLGRSPIDSEVAKE
CCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
LEMGLEEYQELLNEVHGCQLLHYEDFERSGEEDFLDRHLGVTDEANPLTVLMESGMRDAL
HHHHHHHHHHHHHHHHCCEEEEHHHHHHCCCHHHHHHHCCCCCCCCHHHHHHHCCHHHHH
IRAIEKLPEREKLVLSLCYDQELNLREIGAVLEVTESRVCQIRSQAITRLRNQLRGML
HHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]