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The map label for this gene is cheD

Identifier: 94312624

GI number: 94312624

Start: 231890

End: 232552

Strand: Direct

Name: cheD

Synonym: Rmet_3692

Alternate gene names: 94312624

Gene position: 231890-232552 (Clockwise)

Preceding gene: 94312623

Following gene: 94312625

Centisome position: 8.99

GC content: 63.95

Gene sequence:

>663_bases
ATGATGCGTGGCACGCCCCAGATGCCGGAGGCCATCGCCACCCGGAAGTATTTCGACCGCGAATTCGACCGGCAGGCCAT
CAAGCTGTTGCCCAACGAGTACTACGTGACGGCCGAGGACGTCGTACTCACGACCGTCCTGGGATCGTGCGTGTCCGCGT
GCATTCGCGACGAAGTGGCCGGCGTCGGCGGCATGAACCATTTCATGCTGCCCGACGACGAGAACGCCGGCGCCGACCGG
ATGCTCTCTACGTCGATGCGCTACGGCTGCTACGCGCTCGAAGTGCTTATCAATGAACTGCTGAAGATGGGCGCGCGTCG
TGAACGGCTGGAGGCCAAAGTATTTGGCGGTGGCGCGGTGCTGGCCAACATGACGACCCTAAATATCGGGGATCGGAATG
CCGATTTCGTACTGAAGTACCTGCGCACGGAAGAAGTGCGCGTGGCCGCGCAGGATCTGCGCGGACCGCACGCGCGACGT
GTCAGCTACTTTCCACGTACCGGCCTTGCACTGGTCCGCCGGCTGACGCGCCAGGACGATACCGTAGGCATCGAACGCGA
GGAACGTGCCCTGGCACGCGCGCTGTCCACGTCGACGAAGGCACCCGCGCGAGGCGCCGTGGAACTGTTCACGCGACAGA
CCACGGCCAGGATCCCGACCTGA

Upstream 100 bases:

>100_bases
TGCTGTTCGCGGGGCACTCGGAGAACTTCTCGTACGTCACCCGCGCATTCCAGTTGCGCGGGCAGACCGTATACGAGCTG
ACGAACAAGAGCGGAGCTGC

Downstream 100 bases:

>100_bases
TGTCGGGCGCGCGGGACGTACAAGACGCGTCATACACGAAATACACGCAAGAGACGTAGAGACCAACATGACTGCCGCGA
AGATCAAGGTGCTGTGCGTG

Product: chemoreceptor glutamine deamidase CheD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 220; Mature: 220

Protein sequence:

>220_residues
MMRGTPQMPEAIATRKYFDREFDRQAIKLLPNEYYVTAEDVVLTTVLGSCVSACIRDEVAGVGGMNHFMLPDDENAGADR
MLSTSMRYGCYALEVLINELLKMGARRERLEAKVFGGGAVLANMTTLNIGDRNADFVLKYLRTEEVRVAAQDLRGPHARR
VSYFPRTGLALVRRLTRQDDTVGIEREERALARALSTSTKAPARGAVELFTRQTTARIPT

Sequences:

>Translated_220_residues
MMRGTPQMPEAIATRKYFDREFDRQAIKLLPNEYYVTAEDVVLTTVLGSCVSACIRDEVAGVGGMNHFMLPDDENAGADR
MLSTSMRYGCYALEVLINELLKMGARRERLEAKVFGGGAVLANMTTLNIGDRNADFVLKYLRTEEVRVAAQDLRGPHARR
VSYFPRTGLALVRRLTRQDDTVGIEREERALARALSTSTKAPARGAVELFTRQTTARIPT
>Mature_220_residues
MMRGTPQMPEAIATRKYFDREFDRQAIKLLPNEYYVTAEDVVLTTVLGSCVSACIRDEVAGVGGMNHFMLPDDENAGADR
MLSTSMRYGCYALEVLINELLKMGARRERLEAKVFGGGAVLANMTTLNIGDRNADFVLKYLRTEEVRVAAQDLRGPHARR
VSYFPRTGLALVRRLTRQDDTVGIEREERALARALSTSTKAPARGAVELFTRQTTARIPT

Specific function: Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis

COG id: COG1871

COG function: function code NT; Chemotaxis protein; stimulates methylation of MCP proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CheD family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CHED_RALME (Q1LH12)

Other databases:

- EMBL:   CP000353
- RefSeq:   YP_585833.1
- ProteinModelPortal:   Q1LH12
- SMR:   Q1LH12
- STRING:   Q1LH12
- GeneID:   4040663
- GenomeReviews:   CP000353_GR
- KEGG:   rme:Rmet_3692
- eggNOG:   COG1871
- HOGENOM:   HBG531149
- OMA:   PRKVYFF
- ProtClustDB:   PRK13489
- BioCyc:   RMET266264:RMET_3692-MONOMER
- GO:   GO:0006935
- HAMAP:   MF_01440
- InterPro:   IPR005659

Pfam domain/function: PF03975 CheD

EC number: =3.5.1.44

Molecular weight: Translated: 24535; Mature: 24535

Theoretical pI: Translated: 9.13; Mature: 9.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMRGTPQMPEAIATRKYFDREFDRQAIKLLPNEYYVTAEDVVLTTVLGSCVSACIRDEVA
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHH
GVGGMNHFMLPDDENAGADRMLSTSMRYGCYALEVLINELLKMGARRERLEAKVFGGGAV
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCEE
LANMTTLNIGDRNADFVLKYLRTEEVRVAAQDLRGPHARRVSYFPRTGLALVRRLTRQDD
EEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCHHHHHHHHHHHCCC
TVGIEREERALARALSTSTKAPARGAVELFTRQTTARIPT
CCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MMRGTPQMPEAIATRKYFDREFDRQAIKLLPNEYYVTAEDVVLTTVLGSCVSACIRDEVA
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHH
GVGGMNHFMLPDDENAGADRMLSTSMRYGCYALEVLINELLKMGARRERLEAKVFGGGAV
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCEE
LANMTTLNIGDRNADFVLKYLRTEEVRVAAQDLRGPHARRVSYFPRTGLALVRRLTRQDD
EEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCHHHHHHHHHHHCCC
TVGIEREERALARALSTSTKAPARGAVELFTRQTTARIPT
CCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA