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The map label for this gene is flhC2 [H]

Identifier: 94312618

GI number: 94312618

Start: 225741

End: 226346

Strand: Direct

Name: flhC2 [H]

Synonym: Rmet_3686

Alternate gene names: 94312618

Gene position: 225741-226346 (Clockwise)

Preceding gene: 94312617

Following gene: 94312619

Centisome position: 8.75

GC content: 63.04

Gene sequence:

>606_bases
TTGACCGCGCTCCTCCAGGCCTCGCCAGCCCGCAGCTTTGCGGCCACCCCCATCCCCAACCGCAAGAGCGTCCTGCAGGA
CGCGAACCAGACGCAGCTCGCCATCGAGCTGATCGGCCTGGGCGCGCGACTGCAGGTGCTTGAAGCCGAGACCACGCTCT
CGCGCGACCGGTTGATCCGCCTGTACAAGGAGCTCCGAGGCGCGTCGCCGCCCAAGGGCATGCTCCCGTTCTCCACGGAC
TGGTTTACTACCTGGCTGCCGAACATCCATTCGTCGCTGTTCTTTTCCGCGTACCAGTTCATGGTGCAGGAAGGCGAGAC
GTCTGGCATTCGCGCGGTCGTGGCGGCCTATCGCCTGTATCTCGAGCACGTCTCGTTGCTCGGTGGCGAAATCGTCTTAA
GTTTCACCCGTGCCTGGACGTTAGTAAGGTTTTTCGAGAGCAACATGCTGCAGCTTTCCTCGTGCACGTGTTGCGGTGGA
CAGTTCGTCACGCACGCTTATGAGCCGCACACGAACTTCGTGTGCAGCCTGTGCCGTCCGCCGTCGCGCGCCGGAAAGGT
GAAGAAGCTCTCGAAGGACGCCGCAGCCGCGCAGACCGAAGCCTGA

Upstream 100 bases:

>100_bases
ACGCGCTGCTTTCCACTCTCACACACACGGCCAAGAGCCACGATATGCAGCAGATCCACGCTGCTATCCTGCTGGCCCGG
CAACCTGTGGAGTCGCTCAA

Downstream 100 bases:

>100_bases
TCCATCTGGCCCAACGTCCGCGCAGGAGGTGGGCCCTGGGTTGGTGAGCGGTGACCCCTCTCGCCCGCGCGGGATGCCCC
CGATGCGTGCCTGACGCGTG

Product: transcriptional activator FlhC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 201; Mature: 200

Protein sequence:

>201_residues
MTALLQASPARSFAATPIPNRKSVLQDANQTQLAIELIGLGARLQVLEAETTLSRDRLIRLYKELRGASPPKGMLPFSTD
WFTTWLPNIHSSLFFSAYQFMVQEGETSGIRAVVAAYRLYLEHVSLLGGEIVLSFTRAWTLVRFFESNMLQLSSCTCCGG
QFVTHAYEPHTNFVCSLCRPPSRAGKVKKLSKDAAAAQTEA

Sequences:

>Translated_201_residues
MTALLQASPARSFAATPIPNRKSVLQDANQTQLAIELIGLGARLQVLEAETTLSRDRLIRLYKELRGASPPKGMLPFSTD
WFTTWLPNIHSSLFFSAYQFMVQEGETSGIRAVVAAYRLYLEHVSLLGGEIVLSFTRAWTLVRFFESNMLQLSSCTCCGG
QFVTHAYEPHTNFVCSLCRPPSRAGKVKKLSKDAAAAQTEA
>Mature_200_residues
TALLQASPARSFAATPIPNRKSVLQDANQTQLAIELIGLGARLQVLEAETTLSRDRLIRLYKELRGASPPKGMLPFSTDW
FTTWLPNIHSSLFFSAYQFMVQEGETSGIRAVVAAYRLYLEHVSLLGGEIVLSFTRAWTLVRFFESNMLQLSSCTCCGGQ
FVTHAYEPHTNFVCSLCRPPSRAGKVKKLSKDAAAAQTEA

Specific function: Transcriptional activator. Together with flhD it acts as a compound sigma factor that activates class 2 flagellar genes [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the flhC family [H]

Homologues:

Organism=Escherichia coli, GI1788201, Length=176, Percent_Identity=61.3636363636364, Blast_Score=234, Evalue=3e-63,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007944
- ProDom:   PD016592 [H]

Pfam domain/function: PF05280 FlhC [H]

EC number: NA

Molecular weight: Translated: 22219; Mature: 22088

Theoretical pI: Translated: 9.01; Mature: 9.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTALLQASPARSFAATPIPNRKSVLQDANQTQLAIELIGLGARLQVLEAETTLSRDRLIR
CCCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHEEHHEECCCCEEEEEHHHHHHHHHHHHH
LYKELRGASPPKGMLPFSTDWFTTWLPNIHSSLFFSAYQFMVQEGETSGIRAVVAAYRLY
HHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
LEHVSLLGGEIVLSFTRAWTLVRFFESNMLQLSSCTCCGGQFVTHAYEPHTNFVCSLCRP
HHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCHHHHHCCCCCCHHHHHHCCC
PSRAGKVKKLSKDAAAAQTEA
CCCCCHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
TALLQASPARSFAATPIPNRKSVLQDANQTQLAIELIGLGARLQVLEAETTLSRDRLIR
CCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHEEHHEECCCCEEEEEHHHHHHHHHHHHH
LYKELRGASPPKGMLPFSTDWFTTWLPNIHSSLFFSAYQFMVQEGETSGIRAVVAAYRLY
HHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
LEHVSLLGGEIVLSFTRAWTLVRFFESNMLQLSSCTCCGGQFVTHAYEPHTNFVCSLCRP
HHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCHHHHHCCCCCCHHHHHHCCC
PSRAGKVKKLSKDAAAAQTEA
CCCCCHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11060496 [H]