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The map label for this gene is yfdC [H]

Identifier: 93006963

GI number: 93006963

Start: 2622091

End: 2623176

Strand: Direct

Name: yfdC [H]

Synonym: Pcryo_2139

Alternate gene names: 93006963

Gene position: 2622091-2623176 (Clockwise)

Preceding gene: 93006956

Following gene: 93006970

Centisome position: 85.69

GC content: 44.29

Gene sequence:

>1086_bases
GTGTCCCAAGATACTGAGCACACTTATAACAATAGCAGCCACTCTAAAGCTGACAAGATAGATGATAAGCGCTTGATTGA
TGAGAGCGCTTATCATCCATCTAGTAATAATAATAAAGATATTAGCGATGCGGATACGCCAGACGACACTAATGCAAAAG
AAAAATTGGAATACGAAGACTTCTCTGAGGATATTAGCAAAGAAGACCAAGAAACCATCAAAAAAGTCGCTAATGATGAC
AATTTAAGTCAAGCAAAAAGCTATGCCAGTATCTTAGTTGAGCAAGTGATGGATGCCAGAGAAACTTTTGAGCGCTCACT
TGGCTCACTATTTACCAGTGCTTTTACCGCTGGCCTTGAGATTGGCATCAGCTTTTTTATGATTTTAGCGGCTTTTGCGC
TTTTGAGTGGCGTGCTACCGAGCCATTATGCTGTTGTACTCGCCTCCCTACTTTACCCGATTGGTTTTATCATCGTCGTC
ATCGGTCAGTCACTATTATTTACCGAACAAACCTCACTCTTAAGCCTACCTGTGCTCAATAAAATCGAACCGCTCAATAA
GCTGCTACGCCTGTGGGCAATCGTCATCGCTGGCAACGTCGTTGGTGGCTGTTTATTTGCTGCATTAATGATAGGTTTAG
GTTTAAATATGCAGCTATTTAGCGTCAGCGACATTGATATTTACGCCGAGCATATCTTAGGGTTTAGATGGTGGGTGATA
TTTGGCAGTGCCATCTTGGCAGGCTGGATGATGGGCGTCACCGCGTGGCTTGTGACCTCAGCGCGCGATACCCTTAGCCG
CATCGTCTTGGTGACGCTTATTACTGGCAGTATCGGCTTTTTGGGTTTGCATCATAGTATCGTGGGTAATATCGAAGTAT
TCTCAGCCTTGCTCTATGGCAATACCGTCAGCTTAGGGCGTTATTTGCTGTTTTTAGCCGTGGTGTTGGTCGGCAATACC
GTCGGCGGCGTGGTATTTGTCGCGATACTTAAAAACCGTACCTTCCTATTCGAATTAGCCAAAGTAAAGGAAGAAACAGC
TAAGGATAAACTAGAGGCACAAAACAATATCCGTGGACCTTACTAG

Upstream 100 bases:

>100_bases
TATAAAATACAGGTGATGCGAGAACTTATATAGTTATCGTATAGCATAATAAATGGCGTTTTTATCCTAAAATGATAGCC
CGATAAATAGCGAGCCAACT

Downstream 100 bases:

>100_bases
AGATAATTAGTACGGTATTTTTAAATCTAACGCTAAAACTCCATAACCGACGTTAACTATAATCAATTCCATTTAAGAAT
AGTATAGGGCTGCTGGGATA

Product: formate/nitrate transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 361; Mature: 360

Protein sequence:

>361_residues
MSQDTEHTYNNSSHSKADKIDDKRLIDESAYHPSSNNNKDISDADTPDDTNAKEKLEYEDFSEDISKEDQETIKKVANDD
NLSQAKSYASILVEQVMDARETFERSLGSLFTSAFTAGLEIGISFFMILAAFALLSGVLPSHYAVVLASLLYPIGFIIVV
IGQSLLFTEQTSLLSLPVLNKIEPLNKLLRLWAIVIAGNVVGGCLFAALMIGLGLNMQLFSVSDIDIYAEHILGFRWWVI
FGSAILAGWMMGVTAWLVTSARDTLSRIVLVTLITGSIGFLGLHHSIVGNIEVFSALLYGNTVSLGRYLLFLAVVLVGNT
VGGVVFVAILKNRTFLFELAKVKEETAKDKLEAQNNIRGPY

Sequences:

>Translated_361_residues
MSQDTEHTYNNSSHSKADKIDDKRLIDESAYHPSSNNNKDISDADTPDDTNAKEKLEYEDFSEDISKEDQETIKKVANDD
NLSQAKSYASILVEQVMDARETFERSLGSLFTSAFTAGLEIGISFFMILAAFALLSGVLPSHYAVVLASLLYPIGFIIVV
IGQSLLFTEQTSLLSLPVLNKIEPLNKLLRLWAIVIAGNVVGGCLFAALMIGLGLNMQLFSVSDIDIYAEHILGFRWWVI
FGSAILAGWMMGVTAWLVTSARDTLSRIVLVTLITGSIGFLGLHHSIVGNIEVFSALLYGNTVSLGRYLLFLAVVLVGNT
VGGVVFVAILKNRTFLFELAKVKEETAKDKLEAQNNIRGPY
>Mature_360_residues
SQDTEHTYNNSSHSKADKIDDKRLIDESAYHPSSNNNKDISDADTPDDTNAKEKLEYEDFSEDISKEDQETIKKVANDDN
LSQAKSYASILVEQVMDARETFERSLGSLFTSAFTAGLEIGISFFMILAAFALLSGVLPSHYAVVLASLLYPIGFIIVVI
GQSLLFTEQTSLLSLPVLNKIEPLNKLLRLWAIVIAGNVVGGCLFAALMIGLGLNMQLFSVSDIDIYAEHILGFRWWVIF
GSAILAGWMMGVTAWLVTSARDTLSRIVLVTLITGSIGFLGLHHSIVGNIEVFSALLYGNTVSLGRYLLFLAVVLVGNTV
GGVVFVAILKNRTFLFELAKVKEETAKDKLEAQNNIRGPY

Specific function: Unknown

COG id: COG2116

COG function: function code P; Formate/nitrite family of transporters

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1788689, Length=295, Percent_Identity=27.4576271186441, Blast_Score=94, Evalue=2e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000292 [H]

Pfam domain/function: PF01226 Form_Nir_trans [H]

EC number: NA

Molecular weight: Translated: 39597; Mature: 39466

Theoretical pI: Translated: 4.76; Mature: 4.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQDTEHTYNNSSHSKADKIDDKRLIDESAYHPSSNNNKDISDADTPDDTNAKEKLEYED
CCCCCCCCCCCCCCCHHHHCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHCCHHH
FSEDISKEDQETIKKVANDDNLSQAKSYASILVEQVMDARETFERSLGSLFTSAFTAGLE
HHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IGISFFMILAAFALLSGVLPSHYAVVLASLLYPIGFIIVVIGQSLLFTEQTSLLSLPVLN
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCHHHH
KIEPLNKLLRLWAIVIAGNVVGGCLFAALMIGLGLNMQLFSVSDIDIYAEHILGFRWWVI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHH
FGSAILAGWMMGVTAWLVTSARDTLSRIVLVTLITGSIGFLGLHHSIVGNIEVFSALLYG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHC
NTVSLGRYLLFLAVVLVGNTVGGVVFVAILKNRTFLFELAKVKEETAKDKLEAQNNIRGP
CHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
Y
C
>Mature Secondary Structure 
SQDTEHTYNNSSHSKADKIDDKRLIDESAYHPSSNNNKDISDADTPDDTNAKEKLEYED
CCCCCCCCCCCCCCHHHHCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHCCHHH
FSEDISKEDQETIKKVANDDNLSQAKSYASILVEQVMDARETFERSLGSLFTSAFTAGLE
HHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IGISFFMILAAFALLSGVLPSHYAVVLASLLYPIGFIIVVIGQSLLFTEQTSLLSLPVLN
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCHHHH
KIEPLNKLLRLWAIVIAGNVVGGCLFAALMIGLGLNMQLFSVSDIDIYAEHILGFRWWVI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHH
FGSAILAGWMMGVTAWLVTSARDTLSRIVLVTLITGSIGFLGLHHSIVGNIEVFSALLYG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHC
NTVSLGRYLLFLAVVLVGNTVGGVVFVAILKNRTFLFELAKVKEETAKDKLEAQNNIRGP
CHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
Y
C

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503 [H]