Click here to switch to the map view.

The map label for this gene is yclQ [H]

Identifier: 93006731

GI number: 93006731

Start: 2355105

End: 2356157

Strand: Direct

Name: yclQ [H]

Synonym: Pcryo_1907

Alternate gene names: 93006731

Gene position: 2355105-2356157 (Clockwise)

Preceding gene: 93006727

Following gene: 93006732

Centisome position: 76.97

GC content: 44.73

Gene sequence:

>1053_bases
ATGTCTACTACCTCATTCTCTAGCCACCGTGCTACTCCTGTTTTTAAACGTCCCTTAATAGCTGCTCTCATGACTGCACT
GCTTACTAGTATTACCGTAACTGGCTGTATCGCTCCTGAATCTAATGACTCAGAACCCGCAGATAGCAACACCGAAAATA
AAACCGCTGATAAAGCCAAAAATGTCGCCACTAACGAGGCGGTTTCTGTGACCATTATTAGCGTTGATACCATCAAGGGA
TCTGTTGATTTGGCAATCAACCCATCGCCGCTAGTGGTTTATGACATGACCTTGATGCAGGATTTGGCAGCGCTCGATGT
CGCTGTTGATGGCATGCCAAGCGGTCTAAAATTGAATAACCTGCATTCAAAAACTCAACCAGATCCGAAAAAAGTCGGCA
CAGTATTTGAGCCAGATCTTGAAGCATTAAACGCAATGCAACCACAAGCTATCTTGGTCGGCTCGCGTATGGCAGAGAAA
TATAATGCGCTCTCAAGCATCGCCCCAACGCTCAATATGAGTATTGATACTGCCAATATCTATGAGTCTAGCAAACAGCG
CTTGCATGATTTGGGTGCGTTATTTGGCAAAAGCGATCAAGCCTTGAAGCTGCAACAGGATATCGACGGTCTTATTGATG
AGACGAAAACAGCGACCAAAGATAAAGGCAATGGCTTGGTCATCATGGTTAATGGTAATAAGTTGTCTGCTTACGGTGAT
AAGTCACGTTTTGGCTTTATCCATACCGTACTTGGCGTACCTATGGTAGATAATCAGATAAAAGACGCCGATCATGGTCA
GCCGGTTTCCTTTGAATACTTGCAAAAAACCAACCCTGACTGGCTGTTTGTGATTGACCGTAGCGCGGCTATCGGTGAAG
AAAGCGTTGGTGCAAAAGCCGTCTTGGACAATCCATTAGTCGCGCAAACGACGGCTTGGAAAAAGAATCAAGTGGTCTAT
CTAAGCCCAGATTCATACCTAGCATTTGGTGGTTATTATCAGTGGATGCAAGATTTGACCGCGATTAAAACGGCATTTAG
CCAAGCAAAGTAA

Upstream 100 bases:

>100_bases
TTATAATAAAACACCGACTCATTTAACCTGCCGTTAAATGAAGATTTTTATCGAGCAGGTTGTATAAAACTGCCAAAACC
CGTCCTATACCGAGTTATCT

Downstream 100 bases:

>100_bases
ACATTTTTATTCGTTGAAAAACAGACGTAAGTGCCCATTCTTGCGTCTACCCTTTACGCCAGCCATAAGTTAGCAGCCGT
TATGCCCCTATTTTCTAATC

Product: periplasmic binding protein

Products: ADP; phosphate; iron dicitrate [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 350; Mature: 349

Protein sequence:

>350_residues
MSTTSFSSHRATPVFKRPLIAALMTALLTSITVTGCIAPESNDSEPADSNTENKTADKAKNVATNEAVSVTIISVDTIKG
SVDLAINPSPLVVYDMTLMQDLAALDVAVDGMPSGLKLNNLHSKTQPDPKKVGTVFEPDLEALNAMQPQAILVGSRMAEK
YNALSSIAPTLNMSIDTANIYESSKQRLHDLGALFGKSDQALKLQQDIDGLIDETKTATKDKGNGLVIMVNGNKLSAYGD
KSRFGFIHTVLGVPMVDNQIKDADHGQPVSFEYLQKTNPDWLFVIDRSAAIGEESVGAKAVLDNPLVAQTTAWKKNQVVY
LSPDSYLAFGGYYQWMQDLTAIKTAFSQAK

Sequences:

>Translated_350_residues
MSTTSFSSHRATPVFKRPLIAALMTALLTSITVTGCIAPESNDSEPADSNTENKTADKAKNVATNEAVSVTIISVDTIKG
SVDLAINPSPLVVYDMTLMQDLAALDVAVDGMPSGLKLNNLHSKTQPDPKKVGTVFEPDLEALNAMQPQAILVGSRMAEK
YNALSSIAPTLNMSIDTANIYESSKQRLHDLGALFGKSDQALKLQQDIDGLIDETKTATKDKGNGLVIMVNGNKLSAYGD
KSRFGFIHTVLGVPMVDNQIKDADHGQPVSFEYLQKTNPDWLFVIDRSAAIGEESVGAKAVLDNPLVAQTTAWKKNQVVY
LSPDSYLAFGGYYQWMQDLTAIKTAFSQAK
>Mature_349_residues
STTSFSSHRATPVFKRPLIAALMTALLTSITVTGCIAPESNDSEPADSNTENKTADKAKNVATNEAVSVTIISVDTIKGS
VDLAINPSPLVVYDMTLMQDLAALDVAVDGMPSGLKLNNLHSKTQPDPKKVGTVFEPDLEALNAMQPQAILVGSRMAEKY
NALSSIAPTLNMSIDTANIYESSKQRLHDLGALFGKSDQALKLQQDIDGLIDETKTATKDKGNGLVIMVNGNKLSAYGDK
SRFGFIHTVLGVPMVDNQIKDADHGQPVSFEYLQKTNPDWLFVIDRSAAIGEESVGAKAVLDNPLVAQTTAWKKNQVVYL
SPDSYLAFGGYYQWMQDLTAIKTAFSQAK

Specific function: Probably part of an ABC transporter complex [H]

COG id: COG4607

COG function: function code P; ABC-type enterochelin transport system, periplasmic component

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Fe/B12 periplasmic-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002491 [H]

Pfam domain/function: PF01497 Peripla_BP_2 [H]

EC number: NA

Molecular weight: Translated: 37732; Mature: 37601

Theoretical pI: Translated: 5.03; Mature: 5.03

Prosite motif: PS50983 FE_B12_PBP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTTSFSSHRATPVFKRPLIAALMTALLTSITVTGCIAPESNDSEPADSNTENKTADKAK
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCCCCCHHHHHH
NVATNEAVSVTIISVDTIKGSVDLAINPSPLVVYDMTLMQDLAALDVAVDGMPSGLKLNN
HCCCCCEEEEEEEEEEEECCEEEEEECCCCEEEEEHHHHHHHHHHHHHCCCCCCCCEECC
LHSKTQPDPKKVGTVFEPDLEALNAMQPQAILVGSRMAEKYNALSSIAPTLNMSIDTANI
CCCCCCCCHHHCCCCCCCCHHHHHCCCCCEEEHHHHHHHHHHHHHHHCCHHEEEECHHHH
YESSKQRLHDLGALFGKSDQALKLQQDIDGLIDETKTATKDKGNGLVIMVNGNKLSAYGD
HHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHCCCCCCCEEEEEEECCEEEECCC
KSRFGFIHTVLGVPMVDNQIKDADHGQPVSFEYLQKTNPDWLFVIDRSAAIGEESVGAKA
CCHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHCCCCCEEEEEECCCCCCCHHCCCCE
VLDNPLVAQTTAWKKNQVVYLSPDSYLAFGGYYQWMQDLTAIKTAFSQAK
EECCCCEEEECCCCCCCEEEECCCCEEEECHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
STTSFSSHRATPVFKRPLIAALMTALLTSITVTGCIAPESNDSEPADSNTENKTADKAK
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCCCCCHHHHHH
NVATNEAVSVTIISVDTIKGSVDLAINPSPLVVYDMTLMQDLAALDVAVDGMPSGLKLNN
HCCCCCEEEEEEEEEEEECCEEEEEECCCCEEEEEHHHHHHHHHHHHHCCCCCCCCEECC
LHSKTQPDPKKVGTVFEPDLEALNAMQPQAILVGSRMAEKYNALSSIAPTLNMSIDTANI
CCCCCCCCHHHCCCCCCCCHHHHHCCCCCEEEHHHHHHHHHHHHHHHCCHHEEEECHHHH
YESSKQRLHDLGALFGKSDQALKLQQDIDGLIDETKTATKDKGNGLVIMVNGNKLSAYGD
HHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHCCCCCCCEEEEEEECCEEEECCC
KSRFGFIHTVLGVPMVDNQIKDADHGQPVSFEYLQKTNPDWLFVIDRSAAIGEESVGAKA
CCHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHCCCCCEEEEEECCCCCCCHHCCCCE
VLDNPLVAQTTAWKKNQVVYLSPDSYLAFGGYYQWMQDLTAIKTAFSQAK
EECCCCEEEECCCCCCCEEEECCCCEEEECHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; iron dicitrate [Periplasm]; H2O [C]

Specific reaction: ATP + iron dicitrate [Periplasm] + H2O = ADP + phosphate + iron dicitrate [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969502; 9384377; 10658653 [H]