| Definition | Psychrobacter cryohalolentis K5 chromosome, complete genome. |
|---|---|
| Accession | NC_007969 |
| Length | 3,059,876 |
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The map label for this gene is sefC [H]
Identifier: 93006655
GI number: 93006655
Start: 2260156
End: 2262660
Strand: Direct
Name: sefC [H]
Synonym: Pcryo_1831
Alternate gene names: 93006655
Gene position: 2260156-2262660 (Clockwise)
Preceding gene: 93006654
Following gene: 93006656
Centisome position: 73.86
GC content: 50.78
Gene sequence:
>2505_bases TTGCAAGGTGTGGCAGTATCTATTAGCCACGCCGCGGCACTGAGTGAAGATATCTCTACGAGCAGCGTTGATACCAACGC TGCTTTTTTGCGTGTTGCGAAAGCTATGGAGCCTACAATTCAGGCTCAAACGGATACCATTGCTCAGGCTAATATAGATG CGGATTTGGCTCAGCTTGATTTGGACCGTTATAGTGATGATGACGATGCAGGGCTGGATTTATATCTGGACGTCACGCTG AATGGTGCCAGTAAGGGTCTAGTACACTTCGACTACCGTGATGAGCGCCTTTGGGCAACAGCAGCTATCTTGCAACAGCT GAGCTTTGTGTTGCCTCCATCGCTACAGGCAAGCCGTGACCCTATCGCCCTTGACAGCCTACCTAAGCTGAATATTGACT ACGATGCACGCCAGCAAACACTCACCCTTATTGCTCCACTCGATATGCTCAAGCTAGATACGACTACCCATAGTACGCGC ACCAATAAGCGCCCAAAAGCGAGCGCCTCGCCCGGTCTGTTATTAAACTATGACCTGTATGGCAGTCAAACTCAGAATAG CACTAAAAGTCTGAGCGCCTATACGGAGCTGCGCGCCTTTAATGCGCTTGGCGTGGTCAGCTCTACCGCCTTAACGACTG CAAATACGGCTGCTAATGACAGTCGCCACAGTCAGTGGAAGGGTCAAACCGTGCGCCTTGATACTAGCTGGAGTCAATCC TTCCCTGATAAGCTGCTGACGGTTCGGGCAGGCGATATTCTGACCGGTGCATTATCGTGGACGCGGTCGACACGTTTGGG CGGTCTACAAATCGGCACCAACTTTAATCTGCAGCCTTATCGCTCGACCACACCGTTGCCATCGTTTTTTGGCTCAGCAA CTCTACCCTCAAAGGTAGAGCTGTTTGTTGATGGTCTTAAACACTATAGCGGTGAGGTGCCCGCCGGTCCCTTTGAGCTG GACACCGCGCCTAGTATCAGTGGCGCAGGAACGGCGCAACTGGTGGTCACCGATGCCTTGGGTCAAAGCAAGACGCTAAA CTTTTCCTTATATGACACCCATCGACTGCTCCAGCCCGGACTGTCTGATTGGTCAGTTGAGATGGGCGCAGTGCGTGAAA ATTATGGGACGGAATCTTTTGATTATGGGGATGCGCTTGCCGCCAGTGGAACTTGGCGCCATGGGGTGTCCAACCGTTTT ACCGCTGAAACCCATGCCGAAGTGACGCACGGTCTCTCCAATGCAGGTGTCGGTGGGACTTGGCTATTGGGGCGCGCTGG TGGTATTTTGTTTGCCTCGCTAGCCGCAAGCCATAGTCAGGGACAAAGCGGCATGCAGTACAGCACCAATTATTCATGGA ATAATCGTCGCTTTAACATTGGTTTTAATGCGCTGGGAACTTCTGGTGTATATCGCGATGTAGGCTCCCAATATGGCAAT GCCCCTGTACATCGAAGTGAGCAAATATCTACTGGTTATAGCATACCGACGCTCGGTAATTTTGGGCTAAGTTACCATCA GGTTGCCCAAGCTGAAAAAGAGGACACGCAATTTGCCCGTGTCTCTTGGTCCAAATCCTTTGGCAGACGAGTAAGTATGA ACCTCAATTATAACCATGACTTTGACCAATCAGCAAAAAGTAGCCTGTCGATAGGCGCATCGCTATCACTAGATCGCAAT ATGTCAATGCGAAATAGCTTGCAACACACCGCAGCGCAAGACATCATCACAGCAGATATCTCAAAATCAGCGCCAAGCGC AGGTGGCATTGATTGGCGCGCGCAGGTACGCCACAGCGCGGCTAGCCAATCAGACGACAGCTTAAATAGTAATACTAAAG ACAGTACAGGCGCGTTGGCTGAGCTGAGCTACCTTGGACGCTACGGACGGGTTCAGGCTGGTATCAGTAGTAATGATGAC AGCTATGCCACTTACGCCAGTGGCACAGGGTCACTTGTGATGATGGGCGGCGGCATGTTTCCTGCGCGCCAAATTAATAG CGGATTTGCGGTGGTATCGACTGGCGGTATCGCTGATGTGCCCGTCCTATTGCAAAACAATCCTATTGGCACGACCAACC ACCGCGGGCTGCTGCTAGTGACACCGCTCAATGCCTATCAAGAGAATAAGATTGCTATCGACCCCATGCAGTTGCCTGCT GACTTACGTATTAATAAAGTCAGTCTGGACGCAACCCCAACCGACCGTGCCGGAGTTATGGTCGCTTTTGATATTACCCC TGTGCGCTCAGCAACCATTGTATTAATCGATAGCGATGAGCAACCGATTGCACTTGGTAGTCAAGTCACCTTGATCTCCA ACGAAGATACGCCAACCACTGTAGTGGGTTTTGATGGTGAGGTATATTTGGATACATTGGATGCCCACAATACACTGGAG GTCACTACCCCTGCTGATGGCATTTGTACTGTGCGCTTTAAGTACACCAAGCAAGGCGATGAGATTCCGCTCCTCGGTCC TTTTATCTGTAAAAAGGTACAATAA
Upstream 100 bases:
>100_bases TCCGTGCTAACTTCAGGGGGTAAATTCAAGGTTATGCTAAATGGTACACAGACGACACCTGACGTCACACTGGACACAAA CACTCGCTAAAGTCGTTTTT
Downstream 100 bases:
>100_bases TGTTACGACTTCAAAGCTATCATCTATTGATCATACTAGTAGTGGGTTTATTCTTAGCCAACCCTATAACCGCAAATGCC GCTATTAGCTGTACTCAAGC
Product: fimbrial biogenesis outer membrane usher protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 834; Mature: 834
Protein sequence:
>834_residues MQGVAVSISHAAALSEDISTSSVDTNAAFLRVAKAMEPTIQAQTDTIAQANIDADLAQLDLDRYSDDDDAGLDLYLDVTL NGASKGLVHFDYRDERLWATAAILQQLSFVLPPSLQASRDPIALDSLPKLNIDYDARQQTLTLIAPLDMLKLDTTTHSTR TNKRPKASASPGLLLNYDLYGSQTQNSTKSLSAYTELRAFNALGVVSSTALTTANTAANDSRHSQWKGQTVRLDTSWSQS FPDKLLTVRAGDILTGALSWTRSTRLGGLQIGTNFNLQPYRSTTPLPSFFGSATLPSKVELFVDGLKHYSGEVPAGPFEL DTAPSISGAGTAQLVVTDALGQSKTLNFSLYDTHRLLQPGLSDWSVEMGAVRENYGTESFDYGDALAASGTWRHGVSNRF TAETHAEVTHGLSNAGVGGTWLLGRAGGILFASLAASHSQGQSGMQYSTNYSWNNRRFNIGFNALGTSGVYRDVGSQYGN APVHRSEQISTGYSIPTLGNFGLSYHQVAQAEKEDTQFARVSWSKSFGRRVSMNLNYNHDFDQSAKSSLSIGASLSLDRN MSMRNSLQHTAAQDIITADISKSAPSAGGIDWRAQVRHSAASQSDDSLNSNTKDSTGALAELSYLGRYGRVQAGISSNDD SYATYASGTGSLVMMGGGMFPARQINSGFAVVSTGGIADVPVLLQNNPIGTTNHRGLLLVTPLNAYQENKIAIDPMQLPA DLRINKVSLDATPTDRAGVMVAFDITPVRSATIVLIDSDEQPIALGSQVTLISNEDTPTTVVGFDGEVYLDTLDAHNTLE VTTPADGICTVRFKYTKQGDEIPLLGPFICKKVQ
Sequences:
>Translated_834_residues MQGVAVSISHAAALSEDISTSSVDTNAAFLRVAKAMEPTIQAQTDTIAQANIDADLAQLDLDRYSDDDDAGLDLYLDVTL NGASKGLVHFDYRDERLWATAAILQQLSFVLPPSLQASRDPIALDSLPKLNIDYDARQQTLTLIAPLDMLKLDTTTHSTR TNKRPKASASPGLLLNYDLYGSQTQNSTKSLSAYTELRAFNALGVVSSTALTTANTAANDSRHSQWKGQTVRLDTSWSQS FPDKLLTVRAGDILTGALSWTRSTRLGGLQIGTNFNLQPYRSTTPLPSFFGSATLPSKVELFVDGLKHYSGEVPAGPFEL DTAPSISGAGTAQLVVTDALGQSKTLNFSLYDTHRLLQPGLSDWSVEMGAVRENYGTESFDYGDALAASGTWRHGVSNRF TAETHAEVTHGLSNAGVGGTWLLGRAGGILFASLAASHSQGQSGMQYSTNYSWNNRRFNIGFNALGTSGVYRDVGSQYGN APVHRSEQISTGYSIPTLGNFGLSYHQVAQAEKEDTQFARVSWSKSFGRRVSMNLNYNHDFDQSAKSSLSIGASLSLDRN MSMRNSLQHTAAQDIITADISKSAPSAGGIDWRAQVRHSAASQSDDSLNSNTKDSTGALAELSYLGRYGRVQAGISSNDD SYATYASGTGSLVMMGGGMFPARQINSGFAVVSTGGIADVPVLLQNNPIGTTNHRGLLLVTPLNAYQENKIAIDPMQLPA DLRINKVSLDATPTDRAGVMVAFDITPVRSATIVLIDSDEQPIALGSQVTLISNEDTPTTVVGFDGEVYLDTLDAHNTLE VTTPADGICTVRFKYTKQGDEIPLLGPFICKKVQ >Mature_834_residues MQGVAVSISHAAALSEDISTSSVDTNAAFLRVAKAMEPTIQAQTDTIAQANIDADLAQLDLDRYSDDDDAGLDLYLDVTL NGASKGLVHFDYRDERLWATAAILQQLSFVLPPSLQASRDPIALDSLPKLNIDYDARQQTLTLIAPLDMLKLDTTTHSTR TNKRPKASASPGLLLNYDLYGSQTQNSTKSLSAYTELRAFNALGVVSSTALTTANTAANDSRHSQWKGQTVRLDTSWSQS FPDKLLTVRAGDILTGALSWTRSTRLGGLQIGTNFNLQPYRSTTPLPSFFGSATLPSKVELFVDGLKHYSGEVPAGPFEL DTAPSISGAGTAQLVVTDALGQSKTLNFSLYDTHRLLQPGLSDWSVEMGAVRENYGTESFDYGDALAASGTWRHGVSNRF TAETHAEVTHGLSNAGVGGTWLLGRAGGILFASLAASHSQGQSGMQYSTNYSWNNRRFNIGFNALGTSGVYRDVGSQYGN APVHRSEQISTGYSIPTLGNFGLSYHQVAQAEKEDTQFARVSWSKSFGRRVSMNLNYNHDFDQSAKSSLSIGASLSLDRN MSMRNSLQHTAAQDIITADISKSAPSAGGIDWRAQVRHSAASQSDDSLNSNTKDSTGALAELSYLGRYGRVQAGISSNDD SYATYASGTGSLVMMGGGMFPARQINSGFAVVSTGGIADVPVLLQNNPIGTTNHRGLLLVTPLNAYQENKIAIDPMQLPA DLRINKVSLDATPTDRAGVMVAFDITPVRSATIVLIDSDEQPIALGSQVTLISNEDTPTTVVGFDGEVYLDTLDAHNTLE VTTPADGICTVRFKYTKQGDEIPLLGPFICKKVQ
Specific function: Involved in the export and assembly of the sefA fimbrial subunit [H]
COG id: COG3188
COG function: function code NU; P pilus assembly protein, porin PapC
Gene ontology:
Cell location: Cell outer membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the fimbrial export usher family [H]
Homologues:
Organism=Escherichia coli, GI1789533, Length=294, Percent_Identity=25.8503401360544, Blast_Score=74, Evalue=4e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000015 [H]
Pfam domain/function: PF00577 Usher [H]
EC number: NA
Molecular weight: Translated: 89414; Mature: 89414
Theoretical pI: Translated: 5.26; Mature: 5.26
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQGVAVSISHAAALSEDISTSSVDTNAAFLRVAKAMEPTIQAQTDTIAQANIDADLAQLD CCCEEEEEHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHH LDRYSDDDDAGLDLYLDVTLNGASKGLVHFDYRDERLWATAAILQQLSFVLPPSLQASRD HHHCCCCCCCCEEEEEEEEECCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCC PIALDSLPKLNIDYDARQQTLTLIAPLDMLKLDTTTHSTRTNKRPKASASPGLLLNYDLY CEEECCCCCCCCCCCCCCCEEEEEECCCCEEECCCCCCCCCCCCCCCCCCCCEEEEEECC GSQTQNSTKSLSAYTELRAFNALGVVSSTALTTANTAANDSRHSQWKGQTVRLDTSWSQS CCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCC FPDKLLTVRAGDILTGALSWTRSTRLGGLQIGTNFNLQPYRSTTPLPSFFGSATLPSKVE CCCCEEEEECCCEEEEHHHHCCCCCCCCEEECCCCCCCCCCCCCCCHHHCCCCCCCHHHH LFVDGLKHYSGEVPAGPFELDTAPSISGAGTAQLVVTDALGQSKTLNFSLYDTHRLLQPG HHHHHHHHHCCCCCCCCEECCCCCCCCCCCCEEEEEEECCCCCEEEEEEEECHHHHHCCC LSDWSVEMGAVRENYGTESFDYGDALAASGTWRHGVSNRFTAETHAEVTHGLSNAGVGGT CCCCEEEHHHHHHCCCCCCCCCCCHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCE WLLGRAGGILFASLAASHSQGQSGMQYSTNYSWNNRRFNIGFNALGTSGVYRDVGSQYGN EEEECCCCCEEEHHHHCCCCCCCCCEEECCCCCCCEEEEEECCCCCCCCHHHHHHHHCCC APVHRSEQISTGYSIPTLGNFGLSYHQVAQAEKEDTQFARVSWSKSFGRRVSMNLNYNHD CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEEHHHCCCCEEEEEECCCCC FDQSAKSSLSIGASLSLDRNMSMRNSLQHTAAQDIITADISKSAPSAGGIDWRAQVRHSA CCHHHHHHEECCEEEEECCCCHHHHHHHHHHHHHHEEECCCCCCCCCCCCCHHHHHHHHH ASQSDDSLNSNTKDSTGALAELSYLGRYGRVQAGISSNDDSYATYASGTGSLVMMGGGMF CCCCCCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCEEEEECCCC PARQINSGFAVVSTGGIADVPVLLQNNPIGTTNHRGLLLVTPLNAYQENKIAIDPMQLPA CHHHCCCCEEEEECCCCCCCEEEEECCCCCCCCCCCEEEEECCCCCCCCCEEECCCCCCC DLRINKVSLDATPTDRAGVMVAFDITPVRSATIVLIDSDEQPIALGSQVTLISNEDTPTT CCEEEEEEECCCCCCCCCEEEEEECCCCCCEEEEEEECCCCCEEECCEEEEEECCCCCEE VVGFDGEVYLDTLDAHNTLEVTTPADGICTVRFKYTKQGDEIPLLGPFICKKVQ EEECCCEEEEEEECCCCEEEEECCCCCEEEEEEEECCCCCCCCEECHHHHCCCC >Mature Secondary Structure MQGVAVSISHAAALSEDISTSSVDTNAAFLRVAKAMEPTIQAQTDTIAQANIDADLAQLD CCCEEEEEHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHH LDRYSDDDDAGLDLYLDVTLNGASKGLVHFDYRDERLWATAAILQQLSFVLPPSLQASRD HHHCCCCCCCCEEEEEEEEECCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCC PIALDSLPKLNIDYDARQQTLTLIAPLDMLKLDTTTHSTRTNKRPKASASPGLLLNYDLY CEEECCCCCCCCCCCCCCCEEEEEECCCCEEECCCCCCCCCCCCCCCCCCCCEEEEEECC GSQTQNSTKSLSAYTELRAFNALGVVSSTALTTANTAANDSRHSQWKGQTVRLDTSWSQS CCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCC FPDKLLTVRAGDILTGALSWTRSTRLGGLQIGTNFNLQPYRSTTPLPSFFGSATLPSKVE CCCCEEEEECCCEEEEHHHHCCCCCCCCEEECCCCCCCCCCCCCCCHHHCCCCCCCHHHH LFVDGLKHYSGEVPAGPFELDTAPSISGAGTAQLVVTDALGQSKTLNFSLYDTHRLLQPG HHHHHHHHHCCCCCCCCEECCCCCCCCCCCCEEEEEEECCCCCEEEEEEEECHHHHHCCC LSDWSVEMGAVRENYGTESFDYGDALAASGTWRHGVSNRFTAETHAEVTHGLSNAGVGGT CCCCEEEHHHHHHCCCCCCCCCCCHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCE WLLGRAGGILFASLAASHSQGQSGMQYSTNYSWNNRRFNIGFNALGTSGVYRDVGSQYGN EEEECCCCCEEEHHHHCCCCCCCCCEEECCCCCCCEEEEEECCCCCCCCHHHHHHHHCCC APVHRSEQISTGYSIPTLGNFGLSYHQVAQAEKEDTQFARVSWSKSFGRRVSMNLNYNHD CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEEHHHCCCCEEEEEECCCCC FDQSAKSSLSIGASLSLDRNMSMRNSLQHTAAQDIITADISKSAPSAGGIDWRAQVRHSA CCHHHHHHEECCEEEEECCCCHHHHHHHHHHHHHHEEECCCCCCCCCCCCCHHHHHHHHH ASQSDDSLNSNTKDSTGALAELSYLGRYGRVQAGISSNDDSYATYASGTGSLVMMGGGMF CCCCCCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCEEEEECCCC PARQINSGFAVVSTGGIADVPVLLQNNPIGTTNHRGLLLVTPLNAYQENKIAIDPMQLPA CHHHCCCCEEEEECCCCCCCEEEEECCCCCCCCCCCEEEEECCCCCCCCCEEECCCCCCC DLRINKVSLDATPTDRAGVMVAFDITPVRSATIVLIDSDEQPIALGSQVTLISNEDTPTT CCEEEEEEECCCCCCCCCEEEEEECCCCCCEEEEEEECCCCCEEECCEEEEEECCCCCEE VVGFDGEVYLDTLDAHNTLEVTTPADGICTVRFKYTKQGDEIPLLGPFICKKVQ EEECCCEEEEEEECCCCEEEEECCCCCEEEEEEEECCCCCCCCEECHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8097515 [H]