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The map label for this gene is cydB [H]

Identifier: 93006519

GI number: 93006519

Start: 2095250

End: 2096266

Strand: Direct

Name: cydB [H]

Synonym: Pcryo_1695

Alternate gene names: 93006519

Gene position: 2095250-2096266 (Clockwise)

Preceding gene: 93006518

Following gene: 93006522

Centisome position: 68.47

GC content: 43.95

Gene sequence:

>1017_bases
ATGTTTAACTTTGGTGACGTATTAGATTTACCCCTCATCTGGGGCGGCTTAATTGCTTTAGCTGTCTTCGTTTATGTGTT
ACTTGATGGATTTGATTTGGGCTGCGGTATTTTATTCCCGTTTGCGGGTTCCGACAAAAATCGTAGCCGCATGATGAACT
CTATCGCCCCTTTTTGGGATGGTAATGAGACATGGTTAGTATTGGGCGGTGGTGGTTTATTTGCCGCCTTCCCAGTCGCC
TATGGCATTATTATGACAGGGCTTTATCTGCCGGTCACCTTTATGCTGTTCGGTTTGATTATGCGCGGCGTAGCATTTGA
GTTCCGTTTTAAAGCAACCTCACATCGCTATGTATGGGATACTTTTTTCTTTATCGGCTCTGTGGTTGCTACCTTCTTCC
AAGGGATTATGCTTGGCGCGTTGGTACAAGGACTTGAAGCAAGTAATCGTTTATATACCGGCGGCCCTTTTGATTGGCTC
ACGCCCTTCTCTGTGGTCTGTGGTATCGCTCTAATTATCGGTTACGCGCTGCTTGGCTCGACGTGGTTGATTATTAAGAC
TGAGCATAAGCTACAAGTTTGGGCGCGTAAAGTTTCTGGTTGGATGCTATCAGCATTGGTAGTCGCAATGATTGTCGTGA
CTGCCTTTATGTATTTCTCAGACATTGATGCGCTTGAAGGTTGGTTTAGTTTCCCAGGGTTATTGTACCTTGCACCGATG
CCGATTATCGTCTTGGCGTTATTTTTCTTTATGCGTAAAGACTTGACCTCAGAGCGTGAATATCGTCCGTTCTTATTGAC
CGTCGTGCTATTTTTGATGGGTTATATCGGTGTTTGTTTTGCGATTTTCCCTTACATCGTGCCGTATCAAATGACCATTT
ATGAGGCAGCAGCAGCAGATACTTCATTATCATTTATGCTTATTGGTGCTGGCATTATGCTACCCATTATTTTGAGCTAT
ACCGCGTTTGCCTATTATACGTTTAAAGGTAAAACTGGTCACGAGCACATGTATTAA

Upstream 100 bases:

>100_bases
AAGGTCAAGGTCGCACGTTAAGCGGCGATAGCAATGCCAGTGAGAAAGTAGAAGATTTGGATCAGCCTGCCGATGACGTC
GAAGATGGAGGATTACGCTA

Downstream 100 bases:

>100_bases
TAGCTATTAAGCAGTATTCTATATTCTAAGTTTTCAGGAGAACACTGTTTAGGAGAATATCATGAAAAATCTTAGTAAAA
AACAATCTCAGTGGGCATGG

Product: cytochrome d ubiquinol oxidase subunit II

Products: NA

Alternate protein names: Cytochrome d ubiquinol oxidase subunit II [H]

Number of amino acids: Translated: 338; Mature: 338

Protein sequence:

>338_residues
MFNFGDVLDLPLIWGGLIALAVFVYVLLDGFDLGCGILFPFAGSDKNRSRMMNSIAPFWDGNETWLVLGGGGLFAAFPVA
YGIIMTGLYLPVTFMLFGLIMRGVAFEFRFKATSHRYVWDTFFFIGSVVATFFQGIMLGALVQGLEASNRLYTGGPFDWL
TPFSVVCGIALIIGYALLGSTWLIIKTEHKLQVWARKVSGWMLSALVVAMIVVTAFMYFSDIDALEGWFSFPGLLYLAPM
PIIVLALFFFMRKDLTSEREYRPFLLTVVLFLMGYIGVCFAIFPYIVPYQMTIYEAAAADTSLSFMLIGAGIMLPIILSY
TAFAYYTFKGKTGHEHMY

Sequences:

>Translated_338_residues
MFNFGDVLDLPLIWGGLIALAVFVYVLLDGFDLGCGILFPFAGSDKNRSRMMNSIAPFWDGNETWLVLGGGGLFAAFPVA
YGIIMTGLYLPVTFMLFGLIMRGVAFEFRFKATSHRYVWDTFFFIGSVVATFFQGIMLGALVQGLEASNRLYTGGPFDWL
TPFSVVCGIALIIGYALLGSTWLIIKTEHKLQVWARKVSGWMLSALVVAMIVVTAFMYFSDIDALEGWFSFPGLLYLAPM
PIIVLALFFFMRKDLTSEREYRPFLLTVVLFLMGYIGVCFAIFPYIVPYQMTIYEAAAADTSLSFMLIGAGIMLPIILSY
TAFAYYTFKGKTGHEHMY
>Mature_338_residues
MFNFGDVLDLPLIWGGLIALAVFVYVLLDGFDLGCGILFPFAGSDKNRSRMMNSIAPFWDGNETWLVLGGGGLFAAFPVA
YGIIMTGLYLPVTFMLFGLIMRGVAFEFRFKATSHRYVWDTFFFIGSVVATFFQGIMLGALVQGLEASNRLYTGGPFDWL
TPFSVVCGIALIIGYALLGSTWLIIKTEHKLQVWARKVSGWMLSALVVAMIVVTAFMYFSDIDALEGWFSFPGLLYLAPM
PIIVLALFFFMRKDLTSEREYRPFLLTVVLFLMGYIGVCFAIFPYIVPYQMTIYEAAAADTSLSFMLIGAGIMLPIILSY
TAFAYYTFKGKTGHEHMY

Specific function: Cytochrome D Terminal Oxidase Complex Is The Component Of The Aerobic Respiratory Chain Of E.Coli That Predominates When Cells Are Grown At Low Aeration. [C]

COG id: COG1294

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 2

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786954, Length=369, Percent_Identity=28.4552845528455, Blast_Score=135, Evalue=4e-33,
Organism=Escherichia coli, GI1787213, Length=369, Percent_Identity=28.1842818428184, Blast_Score=123, Evalue=2e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003317 [H]

Pfam domain/function: PF02322 Cyto_ox_2 [H]

EC number: 1.10.3.-

Molecular weight: Translated: 37781; Mature: 37781

Theoretical pI: Translated: 6.11; Mature: 6.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
5.0 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFNFGDVLDLPLIWGGLIALAVFVYVLLDGFDLGCGILFPFAGSDKNRSRMMNSIAPFWD
CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHCCCCC
GNETWLVLGGGGLFAAFPVAYGIIMTGLYLPVTFMLFGLIMRGVAFEFRFKATSHRYVWD
CCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCHHHH
TFFFIGSVVATFFQGIMLGALVQGLEASNRLYTGGPFDWLTPFSVVCGIALIIGYALLGS
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCHHCCHHHHHHHHHHHHHHHHHCC
TWLIIKTEHKLQVWARKVSGWMLSALVVAMIVVTAFMYFSDIDALEGWFSFPGLLYLAPM
EEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
PIIVLALFFFMRKDLTSEREYRPFLLTVVLFLMGYIGVCFAIFPYIVPYQMTIYEAAAAD
HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCC
TSLSFMLIGAGIMLPIILSYTAFAYYTFKGKTGHEHMY
CCHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCC
>Mature Secondary Structure
MFNFGDVLDLPLIWGGLIALAVFVYVLLDGFDLGCGILFPFAGSDKNRSRMMNSIAPFWD
CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHCCCCC
GNETWLVLGGGGLFAAFPVAYGIIMTGLYLPVTFMLFGLIMRGVAFEFRFKATSHRYVWD
CCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCHHHH
TFFFIGSVVATFFQGIMLGALVQGLEASNRLYTGGPFDWLTPFSVVCGIALIIGYALLGS
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCHHCCHHHHHHHHHHHHHHHHHCC
TWLIIKTEHKLQVWARKVSGWMLSALVVAMIVVTAFMYFSDIDALEGWFSFPGLLYLAPM
EEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
PIIVLALFFFMRKDLTSEREYRPFLLTVVLFLMGYIGVCFAIFPYIVPYQMTIYEAAAAD
HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCC
TSLSFMLIGAGIMLPIILSYTAFAYYTFKGKTGHEHMY
CCHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]