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The map label for this gene is ygaU [H]

Identifier: 93005348

GI number: 93005348

Start: 613010

End: 613516

Strand: Direct

Name: ygaU [H]

Synonym: Pcryo_0518

Alternate gene names: 93005348

Gene position: 613010-613516 (Clockwise)

Preceding gene: 93005347

Following gene: 93005350

Centisome position: 20.03

GC content: 37.08

Gene sequence:

>507_bases
ATGGGTATGTTCAGTTTTGCAAAAGACATTGGTGATAAAATCTTTAATCGTGATGACGCCAAGCATGACGCTAAAGTAGA
AACCAAAGCAGATGCTAATACACCAGTACAGAGTACTGAGCCTTCAGCGCAATCAGTAGCCAATATTTTACTTCGTCGTA
TTCAGCAGCAAAATCTAAATATTAGTGATTTAAAGATTAAGTATAATGGGTCAACCGATACTGCAGAAATTAGTGGTAAA
GCTAAGACTCAAGCTGATCGCGAAAAAGCTATTATTGCCATCGGTAATGTACAAAACGTGGCTAAAGTCATTGATAATAT
CGATATTGAAGAGCAGTCACCTGAGTCGACTATGTACACTGTAAAATCTGGTGATAGCTTGTCTAAAATTGCAAAAGATG
TTTATGGTTCAACTGGCGATTATATGAAGATATTTGAAGCCAATAAGCCGATGTTATCTGACCCAGACAAGATTTATCCT
GGTCAAGTACTACGTATTCCTAAATAG

Upstream 100 bases:

>100_bases
ATACTCATAATGGTAAGCACAAAAGGGTGATAACCGATATGCGTTATCATCGAAACAACAATGATGCATAATAATTAATA
ATATTTTAAGGAGCAGTTAT

Downstream 100 bases:

>100_bases
TTGTCATTTTTTAAGTCATTATAAGTATCGAAACACTCATAGTATTTTGGATACTTAGAATATGGCTGAATAAAAACACC
TCAAAATATGAGGTGTTTTT

Product: LysM domain/BON superfamily protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 168; Mature: 167

Protein sequence:

>168_residues
MGMFSFAKDIGDKIFNRDDAKHDAKVETKADANTPVQSTEPSAQSVANILLRRIQQQNLNISDLKIKYNGSTDTAEISGK
AKTQADREKAIIAIGNVQNVAKVIDNIDIEEQSPESTMYTVKSGDSLSKIAKDVYGSTGDYMKIFEANKPMLSDPDKIYP
GQVLRIPK

Sequences:

>Translated_168_residues
MGMFSFAKDIGDKIFNRDDAKHDAKVETKADANTPVQSTEPSAQSVANILLRRIQQQNLNISDLKIKYNGSTDTAEISGK
AKTQADREKAIIAIGNVQNVAKVIDNIDIEEQSPESTMYTVKSGDSLSKIAKDVYGSTGDYMKIFEANKPMLSDPDKIYP
GQVLRIPK
>Mature_167_residues
GMFSFAKDIGDKIFNRDDAKHDAKVETKADANTPVQSTEPSAQSVANILLRRIQQQNLNISDLKIKYNGSTDTAEISGKA
KTQADREKAIIAIGNVQNVAKVIDNIDIEEQSPESTMYTVKSGDSLSKIAKDVYGSTGDYMKIFEANKPMLSDPDKIYPG
QVLRIPK

Specific function: Unknown

COG id: COG1652

COG function: function code S; Uncharacterized protein containing LysM domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI1789019, Length=168, Percent_Identity=40.4761904761905, Blast_Score=119, Evalue=7e-29,

Paralogues:

None

Copy number: 4340 Molecules/Cell In: Early Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018392
- InterPro:   IPR002482
- InterPro:   IPR007055
- InterPro:   IPR014004 [H]

Pfam domain/function: PF04972 BON; PF01476 LysM [H]

EC number: NA

Molecular weight: Translated: 18469; Mature: 18338

Theoretical pI: Translated: 5.98; Mature: 5.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGMFSFAKDIGDKIFNRDDAKHDAKVETKADANTPVQSTEPSAQSVANILLRRIQQQNLN
CCHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC
ISDLKIKYNGSTDTAEISGKAKTQADREKAIIAIGNVQNVAKVIDNIDIEEQSPESTMYT
EEEEEEEECCCCCCEECCCCCHHHCCCCCEEEEECCHHHHHHHHHCCCCCCCCCCCEEEE
VKSGDSLSKIAKDVYGSTGDYMKIFEANKPMLSDPDKIYPGQVLRIPK
EECCCHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCEEECCC
>Mature Secondary Structure 
GMFSFAKDIGDKIFNRDDAKHDAKVETKADANTPVQSTEPSAQSVANILLRRIQQQNLN
CHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC
ISDLKIKYNGSTDTAEISGKAKTQADREKAIIAIGNVQNVAKVIDNIDIEEQSPESTMYT
EEEEEEEECCCCCCEECCCCCHHHCCCCCEEEEECCHHHHHHHHHCCCCCCCCCCCEEEE
VKSGDSLSKIAKDVYGSTGDYMKIFEANKPMLSDPDKIYPGQVLRIPK
EECCCHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]