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The map label for this gene is 93005289

Identifier: 93005289

GI number: 93005289

Start: 563004

End: 563681

Strand: Direct

Name: 93005289

Synonym: Pcryo_0459

Alternate gene names: NA

Gene position: 563004-563681 (Clockwise)

Preceding gene: 93005288

Following gene: 93005290

Centisome position: 18.4

GC content: 49.26

Gene sequence:

>678_bases
ATGAGAAAAGTAGTTATGTTATCGGCAGCTGCCATTCTAGGAATCGCTAGTATCGCTGTGAGCCAAGCTGAAAGTGCTAT
AGATACACCCGTTACTATATCTGCTGTCGCAGAAGGCAAAGAGGTTGTCGAAAATGCCCCTCAAAAGCTAGGTGATGAGC
CTCAAGCGGCGGCTGACACCACGGATGGCGCTGCTTCTGCTGATGCAACTGCACAAGCAGACGCGACAGCAACAGATGCA
CCAGCCGAGGCAACTGCGGCAGCCGCACCAGCTGCTGTCGAAGAGCCAATTCCACAAGATACGCCGCAAGTACAAAAATT
GATTGCGTTATATCCAAATCTGATTGCTCGTATTCAGCCTGTTGCCAAAATATGTTTTGAAGAAGATGAAGTTTGTGACG
TGACGGCTCGTTCTGCTGGTCCAGCTGCAGGCGATGGTCCTCGTGATGGTAAAGCAGTCTATAACGCGGTATGCCAAACT
TGTCATGCGTCAGGACTGCTTGGCTCTCCTAAGTTAGGTGATGCGGGTGCTTGGGGACCTCGTATAGCAAAAGGTAAAGA
TACCCTATATACCCATGCTATCAATGGTTTCAATGCTATGCCTGCCAAAGGCGGCGCAGATATTCCTGATGAAGAAGTGC
AAAATGCCGTTGATTATATGGTTGGTGAAGCCAGCTAG

Upstream 100 bases:

>100_bases
GATGGCTGTTTGCTATTGACAACGGTTTGTTGTCAAAGGAGGACAGACAGAATGTCTAAGTCATGCTGACCCTTGTATAC
GTAATAAGAGAACGTGACGA

Downstream 100 bases:

>100_bases
TTTTTATTGCTAAGGTACTTTAATATCGCACTTTAAAAGGCAATAAATAAAAAGCATCTATCTCATAGTGAGGTAGGTGC
TTTTTTATATATGATTGATA

Product: cytochrome c, class I

Products: NA

Alternate protein names: Cytochrome c555 [H]

Number of amino acids: Translated: 225; Mature: 225

Protein sequence:

>225_residues
MRKVVMLSAAAILGIASIAVSQAESAIDTPVTISAVAEGKEVVENAPQKLGDEPQAAADTTDGAASADATAQADATATDA
PAEATAAAAPAAVEEPIPQDTPQVQKLIALYPNLIARIQPVAKICFEEDEVCDVTARSAGPAAGDGPRDGKAVYNAVCQT
CHASGLLGSPKLGDAGAWGPRIAKGKDTLYTHAINGFNAMPAKGGADIPDEEVQNAVDYMVGEAS

Sequences:

>Translated_225_residues
MRKVVMLSAAAILGIASIAVSQAESAIDTPVTISAVAEGKEVVENAPQKLGDEPQAAADTTDGAASADATAQADATATDA
PAEATAAAAPAAVEEPIPQDTPQVQKLIALYPNLIARIQPVAKICFEEDEVCDVTARSAGPAAGDGPRDGKAVYNAVCQT
CHASGLLGSPKLGDAGAWGPRIAKGKDTLYTHAINGFNAMPAKGGADIPDEEVQNAVDYMVGEAS
>Mature_225_residues
MRKVVMLSAAAILGIASIAVSQAESAIDTPVTISAVAEGKEVVENAPQKLGDEPQAAADTTDGAASADATAQADATATDA
PAEATAAAAPAAVEEPIPQDTPQVQKLIALYPNLIARIQPVAKICFEEDEVCDVTARSAGPAAGDGPRDGKAVYNAVCQT
CHASGLLGSPKLGDAGAWGPRIAKGKDTLYTHAINGFNAMPAKGGADIPDEEVQNAVDYMVGEAS

Specific function: This basic c-type monoheme cytochrome has been found exclusively in the green photosynthetic bacteria, although its role in bacterial photosynthesis is not established. It has an unusually low redox potential compared with mitochondrial cytochrome c. It i

COG id: COG3245

COG function: function code C; Cytochrome c5

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009056
- InterPro:   IPR003088
- InterPro:   IPR002323 [H]

Pfam domain/function: PF00034 Cytochrom_C [H]

EC number: NA

Molecular weight: Translated: 22692; Mature: 22692

Theoretical pI: Translated: 4.09; Mature: 4.09

Prosite motif: PS51007 CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKVVMLSAAAILGIASIAVSQAESAIDTPVTISAVAEGKEVVENAPQKLGDEPQAAADT
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHCCCCCCHHCCC
TDGAASADATAQADATATDAPAEATAAAAPAAVEEPIPQDTPQVQKLIALYPNLIARIQP
CCCCCCCCCCCCCCCCCCCCCCHHHHHHCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH
VAKICFEEDEVCDVTARSAGPAAGDGPRDGKAVYNAVCQTCHASGLLGSPKLGDAGAWGP
HHHHHCCCCCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
RIAKGKDTLYTHAINGFNAMPAKGGADIPDEEVQNAVDYMVGEAS
CCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MRKVVMLSAAAILGIASIAVSQAESAIDTPVTISAVAEGKEVVENAPQKLGDEPQAAADT
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHCCCCCCHHCCC
TDGAASADATAQADATATDAPAEATAAAAPAAVEEPIPQDTPQVQKLIALYPNLIARIQP
CCCCCCCCCCCCCCCCCCCCCCHHHHHHCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH
VAKICFEEDEVCDVTARSAGPAAGDGPRDGKAVYNAVCQTCHASGLLGSPKLGDAGAWGP
HHHHHCCCCCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
RIAKGKDTLYTHAINGFNAMPAKGGADIPDEEVQNAVDYMVGEAS
CCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12093901 [H]