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The map label for this gene is ydfH [C]

Identifier: 93005233

GI number: 93005233

Start: 490288

End: 491004

Strand: Reverse

Name: ydfH [C]

Synonym: Pcryo_0403

Alternate gene names: 93005233

Gene position: 491004-490288 (Counterclockwise)

Preceding gene: 93005236

Following gene: 93005232

Centisome position: 16.05

GC content: 47.28

Gene sequence:

>717_bases
ATGAAAATAGAGAAAACCAAAAAAACAGTTCCTGTGCTTGATGAAATACCCGAGCAAACCATTATTAACTCCATCACCGC
TGCGGTGTCAGAGCAACGCTTGCCCGCTGGAACAAAGCTTGGCGAGCAGATGCTGAGTGACTTGTTTAACTGCAATAGAG
CCAATGTGAGGCGAGCACTCTCTACCCTTGCAACGATGCATGTGGTGCAATTACAGCCCAACCGAGGCGCTTTTGTTTCA
ACTCCGTCACCGAAAGAAGCAGGTGATGTGTTTGAAGCACGGCGCACGATTGAGCGTACACTCGCCCGTAAAGTAATCAA
AAATGCCAGGCTGCAAGACATTGCTGACATGCGTGCTACGATAGCTGCCGAAGCTGACGCGCGGGCGCAAGGTGATAAGC
CCGCGGAGCTACGCCTATCTCGCACTTTCCATATGCAGTTGGCAATGATTTCAGGCAATACAGTTTTAGAGCGGTTTTTG
AGTGAACTTACCTTACGTACCACGCTAATCATTGGGCTATATAACAAAGTTGGCTCATCTAACTGCGCTGAAGACGAACA
TCTTGGCATGGTAAATGCCATTGAAAACAGGGATGAAGAAGGTCTGTTATTGCTGATTAATCAACACTTGAATCACTTAG
AATCTAGCCTAGACTTCAAATGCGCAGCAAAACCTTTCTTTAGCTTAGCCGAGCAGCTGACTATCGTGCCTGCTTGA

Upstream 100 bases:

>100_bases
ATATTTGTTAACAATCATTGTTAACTATTATTGTTAACAAAACAATCTATTTTTTTAATATTTGTTGTAGCGATAACAGT
CGCACACTATAATTGCGTCT

Downstream 100 bases:

>100_bases
GTATTGGTAATAGAAATGCACTTGTAGCACCCTCTAAAGCCGTTTACATTAAAAAACCTGCCAATCATTTGACTGGCAGG
TTTTTTATTTAAAACAATCA

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator GntR Family; Transcriptional Regulator; Transcriptional Regulator Protein GntR Family; Transcriptional Regulator Gntr Family; Transcriptional Regulator Protein; GntR Family Regulatory Protein; GntR Family Transcription Regulator Protein; GntR-Family Transcriptional Regulator; GntR Domain-Containing Protein; Bacterial Regulatory Protein; Transcription Regulator Protein; FCD Domain Protein; Transcriptional Regulator GntR Family Protein; GntR-Type Regulator; TRANSCRIPTIONal REGULATOR GntR Family

Number of amino acids: Translated: 238; Mature: 238

Protein sequence:

>238_residues
MKIEKTKKTVPVLDEIPEQTIINSITAAVSEQRLPAGTKLGEQMLSDLFNCNRANVRRALSTLATMHVVQLQPNRGAFVS
TPSPKEAGDVFEARRTIERTLARKVIKNARLQDIADMRATIAAEADARAQGDKPAELRLSRTFHMQLAMISGNTVLERFL
SELTLRTTLIIGLYNKVGSSNCAEDEHLGMVNAIENRDEEGLLLLINQHLNHLESSLDFKCAAKPFFSLAEQLTIVPA

Sequences:

>Translated_238_residues
MKIEKTKKTVPVLDEIPEQTIINSITAAVSEQRLPAGTKLGEQMLSDLFNCNRANVRRALSTLATMHVVQLQPNRGAFVS
TPSPKEAGDVFEARRTIERTLARKVIKNARLQDIADMRATIAAEADARAQGDKPAELRLSRTFHMQLAMISGNTVLERFL
SELTLRTTLIIGLYNKVGSSNCAEDEHLGMVNAIENRDEEGLLLLINQHLNHLESSLDFKCAAKPFFSLAEQLTIVPA
>Mature_238_residues
MKIEKTKKTVPVLDEIPEQTIINSITAAVSEQRLPAGTKLGEQMLSDLFNCNRANVRRALSTLATMHVVQLQPNRGAFVS
TPSPKEAGDVFEARRTIERTLARKVIKNARLQDIADMRATIAAEADARAQGDKPAELRLSRTFHMQLAMISGNTVLERFL
SELTLRTTLIIGLYNKVGSSNCAEDEHLGMVNAIENRDEEGLLLLINQHLNHLESSLDFKCAAKPFFSLAEQLTIVPA

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 26333; Mature: 26333

Theoretical pI: Translated: 7.57; Mature: 7.57

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIEKTKKTVPVLDEIPEQTIINSITAAVSEQRLPAGTKLGEQMLSDLFNCNRANVRRAL
CCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHH
STLATMHVVQLQPNRGAFVSTPSPKEAGDVFEARRTIERTLARKVIKNARLQDIADMRAT
HHHHHHHHEEECCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
IAAEADARAQGDKPAELRLSRTFHMQLAMISGNTVLERFLSELTLRTTLIIGLYNKVGSS
HHHCCCHHCCCCCCHHHHHHHHEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
NCAEDEHLGMVNAIENRDEEGLLLLINQHLNHLESSLDFKCAAKPFFSLAEQLTIVPA
CCCCHHHCCHHHHHHCCCCCCEEEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKIEKTKKTVPVLDEIPEQTIINSITAAVSEQRLPAGTKLGEQMLSDLFNCNRANVRRAL
CCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHH
STLATMHVVQLQPNRGAFVSTPSPKEAGDVFEARRTIERTLARKVIKNARLQDIADMRAT
HHHHHHHHEEECCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
IAAEADARAQGDKPAELRLSRTFHMQLAMISGNTVLERFLSELTLRTTLIIGLYNKVGSS
HHHCCCHHCCCCCCHHHHHHHHEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
NCAEDEHLGMVNAIENRDEEGLLLLINQHLNHLESSLDFKCAAKPFFSLAEQLTIVPA
CCCCHHHCCHHHHHHCCCCCCEEEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA