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The map label for this gene is 93005230

Identifier: 93005230

GI number: 93005230

Start: 485378

End: 486049

Strand: Direct

Name: 93005230

Synonym: Pcryo_0400

Alternate gene names: NA

Gene position: 485378-486049 (Clockwise)

Preceding gene: 93005227

Following gene: 93005234

Centisome position: 15.86

GC content: 42.26

Gene sequence:

>672_bases
ATGGCAAAACCGATGGCAACTAAACAACAAGGTCGAGTCACAAAATGGCAAGACGATAAAGGCTTTGGTTTTATTGAAAC
CGAAGCAGGCGAGTCGGTATTTTTTCATGTCAGCGCGTTTAAAGCGCAGCGTCGTCCTGTTATCGGCGAAGAGGTTGTTT
TTATCGTTGGATATGATAATCAAAGACGATTGCAAGCAAAAGAGGTGCAAGAGCTGAGCTTTGTACAACAAAAGATGGCG
CAAAAAAATAAGCAAATTCGTCAGCGTAATCACAAACGTAACGCCCAAGCAGAGTTTGAAGCAGGACAAAAGAAACGCTT
GTTTCTTGGTGTTGGATTTTATGGTGTATTGATATTACTGGCGGTCATGAATAAGCTTAGCTGGCTAGTCGTTGGGTGGT
ATGCTGTATTGGGTATGATAACCTATACCATGTATGCCAAAGACAAAGCGGCTGCTCAAAATAATGACTGGCGAACACCT
GAGATGACATTACATATTTTAAGTGCGCTTGGTGGCTGGGTAGGGGCAATGGTCGCACAAACCTACTTGCGTCATAAGTC
ACAAAAGCCTGAATTTCGTATTGCGTATTATTTGACTGTCATCATTAACATGGCAGGGTTACTATTTATATTGGCGGATG
GCGGTTTGGATTTTCTGGAAGAATTGTTATAG

Upstream 100 bases:

>100_bases
ATATAAGAAATGATAAGTCATTTAGAAAAGGTTGTAAGCGCCAATAGTGTAACGTAAATAGTGTAATATATTTGGCGAAT
CTAAAAGTGAGCGCAACATT

Downstream 100 bases:

>100_bases
GTTTTAGATAGTGAGAATAAAAGCCAAAGAAAAGGTGGATTTACAAAAATGCAATCCACCTTTTCTATTAATAAAGCGAT
ATGCCTTGAGACGCGTTAAA

Product: cold-shock DNA-binding domain-containing protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 223; Mature: 222

Protein sequence:

>223_residues
MAKPMATKQQGRVTKWQDDKGFGFIETEAGESVFFHVSAFKAQRRPVIGEEVVFIVGYDNQRRLQAKEVQELSFVQQKMA
QKNKQIRQRNHKRNAQAEFEAGQKKRLFLGVGFYGVLILLAVMNKLSWLVVGWYAVLGMITYTMYAKDKAAAQNNDWRTP
EMTLHILSALGGWVGAMVAQTYLRHKSQKPEFRIAYYLTVIINMAGLLFILADGGLDFLEELL

Sequences:

>Translated_223_residues
MAKPMATKQQGRVTKWQDDKGFGFIETEAGESVFFHVSAFKAQRRPVIGEEVVFIVGYDNQRRLQAKEVQELSFVQQKMA
QKNKQIRQRNHKRNAQAEFEAGQKKRLFLGVGFYGVLILLAVMNKLSWLVVGWYAVLGMITYTMYAKDKAAAQNNDWRTP
EMTLHILSALGGWVGAMVAQTYLRHKSQKPEFRIAYYLTVIINMAGLLFILADGGLDFLEELL
>Mature_222_residues
AKPMATKQQGRVTKWQDDKGFGFIETEAGESVFFHVSAFKAQRRPVIGEEVVFIVGYDNQRRLQAKEVQELSFVQQKMAQ
KNKQIRQRNHKRNAQAEFEAGQKKRLFLGVGFYGVLILLAVMNKLSWLVVGWYAVLGMITYTMYAKDKAAAQNNDWRTPE
MTLHILSALGGWVGAMVAQTYLRHKSQKPEFRIAYYLTVIINMAGLLFILADGGLDFLEELL

Specific function: Unknown

COG id: COG3326

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25456; Mature: 25325

Theoretical pI: Translated: 10.21; Mature: 10.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKPMATKQQGRVTKWQDDKGFGFIETEAGESVFFHVSAFKAQRRPVIGEEVVFIVGYDN
CCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEEEEHHHHHCCCCCCCCEEEEEECCC
QRRLQAKEVQELSFVQQKMAQKNKQIRQRNHKRNAQAEFEAGQKKRLFLGVGFYGVLILL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCEEEEEEECHHHHHHHH
AVMNKLSWLVVGWYAVLGMITYTMYAKDKAAAQNNDWRTPEMTLHILSALGGWVGAMVAQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
TYLRHKSQKPEFRIAYYLTVIINMAGLLFILADGGLDFLEELL
HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHEECCCHHHHHHHC
>Mature Secondary Structure 
AKPMATKQQGRVTKWQDDKGFGFIETEAGESVFFHVSAFKAQRRPVIGEEVVFIVGYDN
CCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEEEEHHHHHCCCCCCCCEEEEEECCC
QRRLQAKEVQELSFVQQKMAQKNKQIRQRNHKRNAQAEFEAGQKKRLFLGVGFYGVLILL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCEEEEEEECHHHHHHHH
AVMNKLSWLVVGWYAVLGMITYTMYAKDKAAAQNNDWRTPEMTLHILSALGGWVGAMVAQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
TYLRHKSQKPEFRIAYYLTVIINMAGLLFILADGGLDFLEELL
HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHEECCCHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA