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The map label for this gene is 93005064

Identifier: 93005064

GI number: 93005064

Start: 276226

End: 276741

Strand: Direct

Name: 93005064

Synonym: Pcryo_0233

Alternate gene names: NA

Gene position: 276226-276741 (Clockwise)

Preceding gene: 93005063

Following gene: 93005065

Centisome position: 9.03

GC content: 46.9

Gene sequence:

>516_bases
ATGACTGTTAAACAAGCTGTAATAAAGAAAAAATCAGTTGTTAAGTTAGCGCTGTCTGGTCTAAGTCTTAGTGTGTTATT
GACACTTAGCGCCTGTAGCGGTGGTGATAACGCTCCCACTGATGAGCCTGCGGTGGTTAATGAAACCGAAGCTGTGGTTG
TGGAGCCAGCAGCGCCTGCTGAAGCTGAGCCTGTCGTTGAGGTAGAAACAGTTGAGGTGTCAGAAGTAAAAGCGGAAGAA
GTAAGTGCTGCCGCTGCTGAGCCTGAAGTGTTGGCTGCTGATGCAGGTGCTGCATTGTATGAAAAACAATGTAAAGTCTG
TCATGAAAAAGGTTTATTAGCCGCGCCAGTATTCGGTAATAAAGAAGCATGGGCACCACGAATCGCCAAAGGTATCGATA
CATTACATATGCACTCTGCCAAAGGCTTTAACAAAATGCCTGCGCAGGCAAGCGCTGAAGTCAGTGAGGCGCAAGTTCAT
GCGGCTGTTGATTATATGGTTGCTGCAGCTAGCTAA

Upstream 100 bases:

>100_bases
GGCGACAGATTCAGCTGAACCTGCAACCAATTAATCCTGCTTGAAGGCAGTATTCAATAATGAGCGGTGTCACTAACCAT
CTATAGATAAGGAAATAACC

Downstream 100 bases:

>100_bases
ATATTATTGATTGAAATTTGCTAAACTGACCGTCATTGTAAGCTTACAGTGGCGGTTTTTTATTCACGCTACAAGGCAAA
ATATAAAGGCACATAGATGA

Product: cytochrome c, class I

Products: NA

Alternate protein names: Cytochrome c555 [H]

Number of amino acids: Translated: 171; Mature: 170

Protein sequence:

>171_residues
MTVKQAVIKKKSVVKLALSGLSLSVLLTLSACSGGDNAPTDEPAVVNETEAVVVEPAAPAEAEPVVEVETVEVSEVKAEE
VSAAAAEPEVLAADAGAALYEKQCKVCHEKGLLAAPVFGNKEAWAPRIAKGIDTLHMHSAKGFNKMPAQASAEVSEAQVH
AAVDYMVAAAS

Sequences:

>Translated_171_residues
MTVKQAVIKKKSVVKLALSGLSLSVLLTLSACSGGDNAPTDEPAVVNETEAVVVEPAAPAEAEPVVEVETVEVSEVKAEE
VSAAAAEPEVLAADAGAALYEKQCKVCHEKGLLAAPVFGNKEAWAPRIAKGIDTLHMHSAKGFNKMPAQASAEVSEAQVH
AAVDYMVAAAS
>Mature_170_residues
TVKQAVIKKKSVVKLALSGLSLSVLLTLSACSGGDNAPTDEPAVVNETEAVVVEPAAPAEAEPVVEVETVEVSEVKAEEV
SAAAAEPEVLAADAGAALYEKQCKVCHEKGLLAAPVFGNKEAWAPRIAKGIDTLHMHSAKGFNKMPAQASAEVSEAQVHA
AVDYMVAAAS

Specific function: This basic c-type monoheme cytochrome has been found exclusively in the green photosynthetic bacteria, although its role in bacterial photosynthesis is not established. It has an unusually low redox potential compared with mitochondrial cytochrome c. It i

COG id: COG3245

COG function: function code C; Cytochrome c5

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009056
- InterPro:   IPR003088
- InterPro:   IPR002323 [H]

Pfam domain/function: PF00034 Cytochrom_C [H]

EC number: NA

Molecular weight: Translated: 17574; Mature: 17443

Theoretical pI: Translated: 4.54; Mature: 4.54

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS51007 CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVKQAVIKKKSVVKLALSGLSLSVLLTLSACSGGDNAPTDEPAVVNETEAVVVEPAAPA
CCHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCEECCCCEEEECCCCCC
EAEPVVEVETVEVSEVKAEEVSAAAAEPEVLAADAGAALYEKQCKVCHEKGLLAAPVFGN
CCCCCEEEEEEEHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHCCCEECCCCCC
KEAWAPRIAKGIDTLHMHSAKGFNKMPAQASAEVSEAQVHAAVDYMVAAAS
CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHEEEECC
>Mature Secondary Structure 
TVKQAVIKKKSVVKLALSGLSLSVLLTLSACSGGDNAPTDEPAVVNETEAVVVEPAAPA
CHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCEECCCCEEEECCCCCC
EAEPVVEVETVEVSEVKAEEVSAAAAEPEVLAADAGAALYEKQCKVCHEKGLLAAPVFGN
CCCCCEEEEEEEHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHCCCEECCCCCC
KEAWAPRIAKGIDTLHMHSAKGFNKMPAQASAEVSEAQVHAAVDYMVAAAS
CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12093901 [H]