| Definition | Psychrobacter cryohalolentis K5 chromosome, complete genome. |
|---|---|
| Accession | NC_007969 |
| Length | 3,059,876 |
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The map label for this gene is gyrB [H]
Identifier: 93004837
GI number: 93004837
Start: 6021
End: 8636
Strand: Direct
Name: gyrB [H]
Synonym: Pcryo_0006
Alternate gene names: 93004837
Gene position: 6021-8636 (Clockwise)
Preceding gene: 93004836
Following gene: 93004838
Centisome position: 0.2
GC content: 43.62
Gene sequence:
>2616_bases ATGAGTGACTCATTACCTACCGACCACCAGCAATTAACGTCAGACAGCGCAGTTGAGACTATTGCCGCCGCTGTCGCTCC TGAGGTATTACCCTCTGATTACAGCTCGAAAGACATCCGAGTACTGCGCGGACTAGAAGCGGTGCGCGTGCGTCCTGGTA TGTATATTGGTGATACCGATGATGGTACTGGCTTGCATCATATGGTCTTTGAGGTGGTGGATAACTCTATCGATGAAGCG CTTGCTGGTCATTGTGATCAAATTGATATCATTATCCACGAAGATGAATCTGTCAGCGTGATGGATAATGGTCGCGGTGT CCCTGTTGACATTCATCCAGAAGAAGGTGTGTCTGCCGCACAGGTTATTATGACGGTACTGCATGCTGGTGGTAAGTTTG ATGATAATAGCTATAAAGTCTCTGGCGGTCTACATGGCGTTGGCGTTTCAGTCGTTAATGCATTATCCAAAAAGCTTGAG ATGAATATCTGGCGTGAAGGTTATCATTATCATCAGACTTATACTGATGGTGTGCCTGATGGCGATATTCAGCAAATGGA AGCGACAGATCAAACTGGCACACAAATCCGTTTTTACCCTAGCAATGACGTATTTACCGGTACTATTTTTGAATATGATA TTTTAGCCAAGCGTTTACGTGAGCTGTCATTTTTGAACTCAGGCGTACGTATTGTTTTGACTGATGAACGTATTGATAAG CGTCATGAGTTTGAACACAAAGGTGGATTGTCAGAGTTTGTCAGCTATATTAATGCTGGTAAAGATGGCATCAATGATGT GTTCCATTTTATCAGTAATCAAGATGATGGTATCAGTGTCGAAGTGGCGTTGCAGTGGACAGATACTTATAACGAAAAGG TGTTTTGTTTTACCAATAACATTCCACAACGTGATGGCGGCACGCATTTATCTGGCTTCCGCTCAGCACTCACGCGTTGT TTGAATACCTATATGGACCGTGAAAATCTTTTCAAAAAAGAGAAAGTGGCTGCGACTGGTGATGATGCCCGTGAAGGTCT AACGGCTATCGTATCTGTTAAAGTTCCAGATCCTAAGTTTTCAAGTCAAACCAAAGATAAGTTGGTATCAAGTGAAGTAA AATCTGCCGTCGAATCAGCAATGCACGATAAGTTTAATGATTATCTGCAAGAAAATCCAAGCGCTGGTAAATTAATTGCC GGTAAAATCATTGATGCTGCTCGTGCTCGTGATGCCGCTCGTAAAGCGCGTGAGATGACTCGTCGTAAGACCACATTAGA TATCGCAGGTCTGCCGGGTAAATTGGCAGATTGCCAAGAAAAAGATCCTGCATTATCAGAGCTATACATTGTAGAAGGGG ACTCTGCTGGCGGTTCAGCCAAGCAAGGTCGTAGCCGTAAAACGCAAGCAATTTTGCCTTTAAAAGGTAAAATCCTAAAC GTTGAGCGCGCGCGTTTTGACAAGATGTTATCGTCACAAGAAGTCGGTAATCTAATTACTGCGCTTGGTTGTGGTATTGG TCCTGATGAATATAATCCTGATAAAGTTCGCTATCATAAAATCATCATCATGACCGATGCGGACGTTGATGGTTCACATA TTCGTACCCTTTTATTAACCTTTTTCTTCCGTCAAACGCCTGAATTGATTGAACGTGGTTATATTTATATTGCTCAGCCA CCGCTTTATAAAGTCAAAAAAGGTCGTCAAGAGCTGTATCTAAAAGATGATGAGGCACTTAAAGCGTATTTATTATCTTC AACGATTGATAATACTAGGCTGCATATCAGTGCTGATGCTCCTGCGATTACTGGTCAAGCGTTAGAGACTTTATTAAACG ATTATAATCAAACGCAGCTTATTAAAGCGCGTTTGCAGATTCGTTATCCAGCCGTTTTGTTGGATGCCCTAACGCATACA CCAAAGCTTAGTACTGATATTACGTATGATAAAGATGCAATGCAAGCATGGAAAGACACGCTACAGACCCAGCTTGAGCA CTTTGGTAGTGACTTAAATCCTGAGATTGAGCTGGTGAATATCCATGCACCACAGCCTAAAAATATGGATGCCGCTGCCG CTGATTTACTGGGTATGAGACCTGTCGTTGCCGTTGAAGAAAGTGATAGCTCTGACACTGAAGCGGTAGTCGCAAAAGCA CAATGGCTGCCACGTATTACGGTCTATGTGCATCAGTTGGCCCATCATTATTTGCTCGATGCCAGCTTTATCAATTCGGG CGAGTATACTAAGCTGCTGCGCTTATCAGCTGAATGGAATACCTTGCTTGATGAAGATGCCTTTATCCGCCGTGACGCAA CAGCGGGTACAACCAAAGACATCCCAATACGTGACTTCGATTATTTGTGGCAGCAAATGATGCTTGACGCGCGTCGTGGT CTAGCGATCCAGCGCTATAAAGGATTGGGCGAGATGAATGCCGATCAGCTGTGGGATACTACCATGGATCCTGAAAACCG CCGTATGCTGCGCGTCAATATTGAAGATGCTATCGCAGCGGATCATATGTTCACCTGCTTGATGGGTGATCATGTAGAGC CGCGTCGTATCTTTATCGAAGAAAATGCGTTAACGGTTTCTAATTTAGATATCTAA
Upstream 100 bases:
>100_bases AATATGACTACAAAACGATATTATAGATAGCATCATTAAGTATCACCACTGTGGTGAGCTGATGATAAACAGCTGATAAT GGCTAGATCAAGGAATGCAC
Downstream 100 bases:
>100_bases ATGGCATAATATTGTGAATCAATGAAAAACCACCGCTTTGGCAACCAATGCGGTGGTTTTTTAATATTAAGCTTGTTTCA CGTGAAACTTAATTGTATAA
Product: DNA gyrase, B subunit
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 871; Mature: 870
Protein sequence:
>871_residues MSDSLPTDHQQLTSDSAVETIAAAVAPEVLPSDYSSKDIRVLRGLEAVRVRPGMYIGDTDDGTGLHHMVFEVVDNSIDEA LAGHCDQIDIIIHEDESVSVMDNGRGVPVDIHPEEGVSAAQVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSKKLE MNIWREGYHYHQTYTDGVPDGDIQQMEATDQTGTQIRFYPSNDVFTGTIFEYDILAKRLRELSFLNSGVRIVLTDERIDK RHEFEHKGGLSEFVSYINAGKDGINDVFHFISNQDDGISVEVALQWTDTYNEKVFCFTNNIPQRDGGTHLSGFRSALTRC LNTYMDRENLFKKEKVAATGDDAREGLTAIVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMHDKFNDYLQENPSAGKLIA GKIIDAARARDAARKAREMTRRKTTLDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRSRKTQAILPLKGKILN VERARFDKMLSSQEVGNLITALGCGIGPDEYNPDKVRYHKIIIMTDADVDGSHIRTLLLTFFFRQTPELIERGYIYIAQP PLYKVKKGRQELYLKDDEALKAYLLSSTIDNTRLHISADAPAITGQALETLLNDYNQTQLIKARLQIRYPAVLLDALTHT PKLSTDITYDKDAMQAWKDTLQTQLEHFGSDLNPEIELVNIHAPQPKNMDAAAADLLGMRPVVAVEESDSSDTEAVVAKA QWLPRITVYVHQLAHHYLLDASFINSGEYTKLLRLSAEWNTLLDEDAFIRRDATAGTTKDIPIRDFDYLWQQMMLDARRG LAIQRYKGLGEMNADQLWDTTMDPENRRMLRVNIEDAIAADHMFTCLMGDHVEPRRIFIEENALTVSNLDI
Sequences:
>Translated_871_residues MSDSLPTDHQQLTSDSAVETIAAAVAPEVLPSDYSSKDIRVLRGLEAVRVRPGMYIGDTDDGTGLHHMVFEVVDNSIDEA LAGHCDQIDIIIHEDESVSVMDNGRGVPVDIHPEEGVSAAQVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSKKLE MNIWREGYHYHQTYTDGVPDGDIQQMEATDQTGTQIRFYPSNDVFTGTIFEYDILAKRLRELSFLNSGVRIVLTDERIDK RHEFEHKGGLSEFVSYINAGKDGINDVFHFISNQDDGISVEVALQWTDTYNEKVFCFTNNIPQRDGGTHLSGFRSALTRC LNTYMDRENLFKKEKVAATGDDAREGLTAIVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMHDKFNDYLQENPSAGKLIA GKIIDAARARDAARKAREMTRRKTTLDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRSRKTQAILPLKGKILN VERARFDKMLSSQEVGNLITALGCGIGPDEYNPDKVRYHKIIIMTDADVDGSHIRTLLLTFFFRQTPELIERGYIYIAQP PLYKVKKGRQELYLKDDEALKAYLLSSTIDNTRLHISADAPAITGQALETLLNDYNQTQLIKARLQIRYPAVLLDALTHT PKLSTDITYDKDAMQAWKDTLQTQLEHFGSDLNPEIELVNIHAPQPKNMDAAAADLLGMRPVVAVEESDSSDTEAVVAKA QWLPRITVYVHQLAHHYLLDASFINSGEYTKLLRLSAEWNTLLDEDAFIRRDATAGTTKDIPIRDFDYLWQQMMLDARRG LAIQRYKGLGEMNADQLWDTTMDPENRRMLRVNIEDAIAADHMFTCLMGDHVEPRRIFIEENALTVSNLDI >Mature_870_residues SDSLPTDHQQLTSDSAVETIAAAVAPEVLPSDYSSKDIRVLRGLEAVRVRPGMYIGDTDDGTGLHHMVFEVVDNSIDEAL AGHCDQIDIIIHEDESVSVMDNGRGVPVDIHPEEGVSAAQVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSKKLEM NIWREGYHYHQTYTDGVPDGDIQQMEATDQTGTQIRFYPSNDVFTGTIFEYDILAKRLRELSFLNSGVRIVLTDERIDKR HEFEHKGGLSEFVSYINAGKDGINDVFHFISNQDDGISVEVALQWTDTYNEKVFCFTNNIPQRDGGTHLSGFRSALTRCL NTYMDRENLFKKEKVAATGDDAREGLTAIVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMHDKFNDYLQENPSAGKLIAG KIIDAARARDAARKAREMTRRKTTLDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRSRKTQAILPLKGKILNV ERARFDKMLSSQEVGNLITALGCGIGPDEYNPDKVRYHKIIIMTDADVDGSHIRTLLLTFFFRQTPELIERGYIYIAQPP LYKVKKGRQELYLKDDEALKAYLLSSTIDNTRLHISADAPAITGQALETLLNDYNQTQLIKARLQIRYPAVLLDALTHTP KLSTDITYDKDAMQAWKDTLQTQLEHFGSDLNPEIELVNIHAPQPKNMDAAAADLLGMRPVVAVEESDSSDTEAVVAKAQ WLPRITVYVHQLAHHYLLDASFINSGEYTKLLRLSAEWNTLLDEDAFIRRDATAGTTKDIPIRDFDYLWQQMMLDARRGL AIQRYKGLGEMNADQLWDTTMDPENRRMLRVNIEDAIAADHMFTCLMGDHVEPRRIFIEENALTVSNLDI
Specific function: DNA gyrase negatively supercoils closed circular double- stranded DNA in an ATP-dependent manner and also catalyzes the interconversion of other topological isomers of double-stranded DNA rings, including catenanes and knotted rings [H]
COG id: COG0187
COG function: function code L; Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 Toprim domain [H]
Homologues:
Organism=Homo sapiens, GI19913406, Length=574, Percent_Identity=25.9581881533101, Blast_Score=142, Evalue=1e-33, Organism=Homo sapiens, GI19913408, Length=595, Percent_Identity=25.546218487395, Blast_Score=142, Evalue=1e-33, Organism=Escherichia coli, GI48994957, Length=846, Percent_Identity=61.1111111111111, Blast_Score=1016, Evalue=0.0, Organism=Escherichia coli, GI1789408, Length=555, Percent_Identity=40.7207207207207, Blast_Score=400, Evalue=1e-112, Organism=Caenorhabditis elegans, GI17535065, Length=570, Percent_Identity=24.2105263157895, Blast_Score=138, Evalue=2e-32, Organism=Caenorhabditis elegans, GI212645845, Length=523, Percent_Identity=25.2390057361377, Blast_Score=128, Evalue=1e-29, Organism=Caenorhabditis elegans, GI212645657, Length=161, Percent_Identity=32.9192546583851, Blast_Score=73, Evalue=6e-13, Organism=Saccharomyces cerevisiae, GI6324241, Length=574, Percent_Identity=24.0418118466899, Blast_Score=114, Evalue=6e-26, Organism=Drosophila melanogaster, GI17136538, Length=578, Percent_Identity=25.9515570934256, Blast_Score=145, Evalue=1e-34,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR011557 - InterPro: IPR020568 - InterPro: IPR014721 - InterPro: IPR001241 - InterPro: IPR013759 - InterPro: IPR002288 - InterPro: IPR013506 - InterPro: IPR013760 - InterPro: IPR018522 - InterPro: IPR006171 [H]
Pfam domain/function: PF00204 DNA_gyraseB; PF00986 DNA_gyraseB_C; PF02518 HATPase_c; PF01751 Toprim [H]
EC number: =5.99.1.3 [H]
Molecular weight: Translated: 97186; Mature: 97055
Theoretical pI: Translated: 4.97; Mature: 4.97
Prosite motif: PS00177 TOPOISOMERASE_II
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDSLPTDHQQLTSDSAVETIAAAVAPEVLPSDYSSKDIRVLRGLEAVRVRPGMYIGDTD CCCCCCCCHHHHCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCHHEEECCCEEECCCC DGTGLHHMVFEVVDNSIDEALAGHCDQIDIIIHEDESVSVMDNGRGVPVDIHPEEGVSAA CCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCEEEEECCCCCEEEECCCCCCHHH QVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSKKLEMNIWREGYHYHQTYTDGVPD HHHHHHHHCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCEECCEECCCCCC GDIQQMEATDQTGTQIRFYPSNDVFTGTIFEYDILAKRLRELSFLNSGVRIVLTDERIDK CCHHHHHCCCCCCCEEEEEECCCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHH RHEFEHKGGLSEFVSYINAGKDGINDVFHFISNQDDGISVEVALQWTDTYNEKVFCFTNN HHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHCCCCCCEEEEEEEEEECCCCCEEEEEECC IPQRDGGTHLSGFRSALTRCLNTYMDRENLFKKEKVAATGDDAREGLTAIVSVKVPDPKF CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEECCCCCC SSQTKDKLVSSEVKSAVESAMHDKFNDYLQENPSAGKLIAGKIIDAARARDAARKAREMT CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHHHHHHHH RRKTTLDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRSRKTQAILPLKGKILN HHHCEEEECCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCEEECCCCCEEEE VERARFDKMLSSQEVGNLITALGCGIGPDEYNPDKVRYHKIIIMTDADVDGSHIRTLLLT HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEECCCCCHHHHHHHHHH FFFRQTPELIERGYIYIAQPPLYKVKKGRQELYLKDDEALKAYLLSSTIDNTRLHISADA HHHHCCHHHHHCCEEEEECCCCHHHHCCCHHEEECCHHHHHHHHHHHCCCCCEEEEECCC PAITGQALETLLNDYNQTQLIKARLQIRYPAVLLDALTHTPKLSTDITYDKDAMQAWKDT CCCCHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH LQTQLEHFGSDLNPEIELVNIHAPQPKNMDAAAADLLGMRPVVAVEESDSSDTEAVVAKA HHHHHHHHCCCCCCCEEEEEEECCCCCCCCHHHHHHHCCCCEEEEECCCCCCHHHHHHHH QWLPRITVYVHQLAHHYLLDASFINSGEYTKLLRLSAEWNTLLDEDAFIRRDATAGTTKD HHCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHCCCCHHHCCCCCCCCCCC IPIRDFDYLWQQMMLDARRGLAIQRYKGLGEMNADQLWDTTMDPENRRMLRVNIEDAIAA CCCCHHHHHHHHHHHHHHHCCEEHHHCCCCCCCHHHHCCCCCCCCCCEEEEEEHHHHHHH DHMFTCLMGDHVEPRRIFIEENALTVSNLDI HHHHHHHHCCCCCCCEEEEECCCEEEECCCC >Mature Secondary Structure SDSLPTDHQQLTSDSAVETIAAAVAPEVLPSDYSSKDIRVLRGLEAVRVRPGMYIGDTD CCCCCCCHHHHCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCHHEEECCCEEECCCC DGTGLHHMVFEVVDNSIDEALAGHCDQIDIIIHEDESVSVMDNGRGVPVDIHPEEGVSAA CCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCEEEEECCCCCEEEECCCCCCHHH QVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSKKLEMNIWREGYHYHQTYTDGVPD HHHHHHHHCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCEECCEECCCCCC GDIQQMEATDQTGTQIRFYPSNDVFTGTIFEYDILAKRLRELSFLNSGVRIVLTDERIDK CCHHHHHCCCCCCCEEEEEECCCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHH RHEFEHKGGLSEFVSYINAGKDGINDVFHFISNQDDGISVEVALQWTDTYNEKVFCFTNN HHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHCCCCCCEEEEEEEEEECCCCCEEEEEECC IPQRDGGTHLSGFRSALTRCLNTYMDRENLFKKEKVAATGDDAREGLTAIVSVKVPDPKF CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEECCCCCC SSQTKDKLVSSEVKSAVESAMHDKFNDYLQENPSAGKLIAGKIIDAARARDAARKAREMT CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHHHHHHHH RRKTTLDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRSRKTQAILPLKGKILN HHHCEEEECCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCEEECCCCCEEEE VERARFDKMLSSQEVGNLITALGCGIGPDEYNPDKVRYHKIIIMTDADVDGSHIRTLLLT HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEECCCCCHHHHHHHHHH FFFRQTPELIERGYIYIAQPPLYKVKKGRQELYLKDDEALKAYLLSSTIDNTRLHISADA HHHHCCHHHHHCCEEEEECCCCHHHHCCCHHEEECCHHHHHHHHHHHCCCCCEEEEECCC PAITGQALETLLNDYNQTQLIKARLQIRYPAVLLDALTHTPKLSTDITYDKDAMQAWKDT CCCCHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH LQTQLEHFGSDLNPEIELVNIHAPQPKNMDAAAADLLGMRPVVAVEESDSSDTEAVVAKA HHHHHHHHCCCCCCCEEEEEEECCCCCCCCHHHHHHHCCCCEEEEECCCCCCHHHHHHHH QWLPRITVYVHQLAHHYLLDASFINSGEYTKLLRLSAEWNTLLDEDAFIRRDATAGTTKD HHCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHCCCCHHHCCCCCCCCCCC IPIRDFDYLWQQMMLDARRGLAIQRYKGLGEMNADQLWDTTMDPENRRMLRVNIEDAIAA CCCCHHHHHHHHHHHHHHHCCEEHHHCCCCCCCHHHHCCCCCCCCCCEEEEEEHHHHHHH DHMFTCLMGDHVEPRRIFIEENALTVSNLDI HHHHHHHHCCCCCCCEEEEECCCEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10952301 [H]