Click here to switch to the map view.

The map label for this gene is cph2 [H]

Identifier: 92113790

GI number: 92113790

Start: 1894902

End: 1897373

Strand: Direct

Name: cph2 [H]

Synonym: Csal_1666

Alternate gene names: 92113790

Gene position: 1894902-1897373 (Clockwise)

Preceding gene: 92113789

Following gene: 92113791

Centisome position: 51.26

GC content: 67.44

Gene sequence:

>2472_bases
ATGGCGACGAAGGGGCGGTGGCGACTGGCAATGACGATTGAGCCCCGGCGCCTCGCGCGGATGGCGATGGCTTCCTGTCT
CATGTTCGTGGCGTGCTGGCAGGCGGTGCCCGGCCAGGCCGCCGAGCCACCGGCCAATGCCATGATCGTGGTGCCGAGCC
AGCTGGCCCTGCAAAGCGATGCGCCGTTGTTGGCCGATCTGCGCGAGCGGCTGGCGAGCCGCGTGGGGGAGGCCAATGTC
ACCCTCGAGATATTGGGCGACGACCGCTTCCCGACATCGACCATGCTGCACCGTTGGCGCGAGACCATGGCACACCGCCA
ACCGGTGGGCAGCGAGGCCAGCGAGGAATATGTCGTGCTCATGCACGATGCCGCCGTGCGCGCCTACCGCGGGCTCGAAC
CGCCGATGAAAAACGCGCATGCGGTGGCATACGGCGTGCGCGATTCGGCGCTGCGCGAATGGCTGAAGGACAACCGCATA
CCGCACGTCGCGCTGGATACCTACGCCGAACGCAGCCTGCATTGGGCGCTCGGCGCCCGCCGCGCCGAGGCCGGGCCGCT
GGCCCTGTGGTACGTGGATGACGCCCGGCGCGATACCCTGGTGGCCAGCGTCCGCCGTCAGGGCGAGACCGCCTCGCTCA
GCGATACCTGGCTCCCCCTGGCCGGGCCCGACCAGGACGCGGTGGCGCAATTCACGGCGCGCCGCCAGCAGCAAGGCCAG
CCGCGTCAGGCGTTTCTTTCGGCGCCGGTCACCCGCGTCAACCTGCGGCGCGTGCAGGCCCTGGCCGCCGAGGGCTGGCA
GTTCTGGTGCTATCAGCGCGAATGGTTGCGCCATGGCTGTCTGGGCGGCATCTTCCCCGAGCCCGATGCCATGGCCGGCG
CGCTGGAAAGCCAGCTGTTCTCCTCCGCGGCGACCCCCCTGAGCCTGGAGGGCCTGTTTGCCTCGAGTCCGCCCAGCGTG
CTCTACAGCGCTCGGGAATGGATTCGCGGCGACGCCAGGAACGACGTGAGCTGGCTGGAAGTGCCCGAGTCAGTCATCGC
CCAACGCCACTGGAGGTGGCTCGCTTTCGGCCTGGCGGCGGGCGCACTGCTCATCGGGGGGCTCATCGGCTGGCTGGCAT
GGCGTCGCGAGGCGCTTCGGCAGCGCCGTCGGCTCGCCATGCGCAACGACCAGGTGACCGATCTGCCGGGGCGCTTCCTG
CTCGAGCGCCGCCTGCAGAATTTCATGGAAGACGCCTACGCCGTCTCGCTGTATTACCTGGCGTTCGATTCCCTGCGTCA
TCTGCGGGCCCAGTTCGGGGTCGAATACGCCAATGTGGCGGCACAGTGCGTGGCGGAACGCTTGCGCGGCACCTGCGGTG
GCGTGTGCTATCCCGCGCGGCTCTCCGACGATGTGTTCGTGGTCATGGCCTCGGGCGCGCAGGACCCCATGGCCCTGGCG
CAGCGCTATCAGGAGGATTTCGACACGCCCATCGAAGTCCACGGCGTGCCGCACCGGCTGGAACCGCGCATCGGCGTGGC
GATTTCCCCCGAGCACGGCAAGACGCCCACGGCGCTGCTGCAGGCCGCGCAGGACGCTGCTGACCAGGTCCTGGCCAGCG
CCGGCACGGAGCCGCAATTCTTCCAGCTCGATATGCTCAAGACCGCCGAGCGGCGGCGCATTCTGGCCGAGACCCTGGCC
GATGCCCTGGAGGAGGAATCGCCGTTCTTCGAGCTGTACCTGCAGCCGCAATATCGGCTTGCCAAGCGCGAACTGGTCGG
CGCCGAAGCCCTGATACGCTGGCATCACCCGGCCCTGGGCACTATTTCGCCGGGCGAGTTCATCCCCGTGGCGGAGGCCA
GCCACCAGATCGTGCCGCTCGACGAGAAGGTCTTCGACGCCATGCTCGCGTGGCTGTCGCACAATATCATGTGGCCGAAG
GAGGGCATGGCCAACGGGCGCTCCCTGGTGTGGGCGATCAATCTCTCGATCCGCCACTTCGACGACATGCGTTTCACCGA
CTGGCTGCTGGCACGCTGCAAGAAATACGGCATTGCGCCGCAGAGCATCGAGCTCGAAGTGACCGAGCACGTCGCCACGC
AGGACCTGGGACAGGTGCGTCAGGTCATGCGTACCCTGCGCCTGCACGGCTTCGGGCTGGTGCTGGATGACTTCGGCGCC
GGCTATACCTCGCTGCGCTTCTTGAAGGAACTGCCGTTCACCAAGGTCAAGCTCGACAAGGTCTATGTCGATTCCATCGC
CGACGATGAGCGCAGCCAACTACTGGTCAAGGGCATCACCGACCTTGCCCGGGGGCTCGGGCTCACCGTGGTGGCCGAGG
GCATCGAGACCCAGGAGCAATTGGACATTCTGCGCGGCTTGGGGTGTCCCATCGGGCAGGGCTACCTGCTGGGCCGACCA
GGTCCGGTGGATGACTTTCTCTATCGGCTGGCGGACAAGCGGGCCGTTACCATGGTCTCTTCCTCGCGCTGA

Upstream 100 bases:

>100_bases
CAGAGACTGAGAGACACAATAACGAGAGCGCCGCCGACATCGTGCGCCGGTGACGAATGGGGAAGGAAGATTGCGCATGA
GACGGGGAGAAGCCAAGAGC

Downstream 100 bases:

>100_bases
TGGCTGACCCCGCGTGGCGCAAACGCGGTATTGAACTTTAGGCATTAGCCACCATCTATACATCCGGGCCGAGCCACGCC
GCCCTGTGCCGGCGCACCCT

Product: diguanylate cyclase/phosphodiesterase

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 823; Mature: 822

Protein sequence:

>823_residues
MATKGRWRLAMTIEPRRLARMAMASCLMFVACWQAVPGQAAEPPANAMIVVPSQLALQSDAPLLADLRERLASRVGEANV
TLEILGDDRFPTSTMLHRWRETMAHRQPVGSEASEEYVVLMHDAAVRAYRGLEPPMKNAHAVAYGVRDSALREWLKDNRI
PHVALDTYAERSLHWALGARRAEAGPLALWYVDDARRDTLVASVRRQGETASLSDTWLPLAGPDQDAVAQFTARRQQQGQ
PRQAFLSAPVTRVNLRRVQALAAEGWQFWCYQREWLRHGCLGGIFPEPDAMAGALESQLFSSAATPLSLEGLFASSPPSV
LYSAREWIRGDARNDVSWLEVPESVIAQRHWRWLAFGLAAGALLIGGLIGWLAWRREALRQRRRLAMRNDQVTDLPGRFL
LERRLQNFMEDAYAVSLYYLAFDSLRHLRAQFGVEYANVAAQCVAERLRGTCGGVCYPARLSDDVFVVMASGAQDPMALA
QRYQEDFDTPIEVHGVPHRLEPRIGVAISPEHGKTPTALLQAAQDAADQVLASAGTEPQFFQLDMLKTAERRRILAETLA
DALEEESPFFELYLQPQYRLAKRELVGAEALIRWHHPALGTISPGEFIPVAEASHQIVPLDEKVFDAMLAWLSHNIMWPK
EGMANGRSLVWAINLSIRHFDDMRFTDWLLARCKKYGIAPQSIELEVTEHVATQDLGQVRQVMRTLRLHGFGLVLDDFGA
GYTSLRFLKELPFTKVKLDKVYVDSIADDERSQLLVKGITDLARGLGLTVVAEGIETQEQLDILRGLGCPIGQGYLLGRP
GPVDDFLYRLADKRAVTMVSSSR

Sequences:

>Translated_823_residues
MATKGRWRLAMTIEPRRLARMAMASCLMFVACWQAVPGQAAEPPANAMIVVPSQLALQSDAPLLADLRERLASRVGEANV
TLEILGDDRFPTSTMLHRWRETMAHRQPVGSEASEEYVVLMHDAAVRAYRGLEPPMKNAHAVAYGVRDSALREWLKDNRI
PHVALDTYAERSLHWALGARRAEAGPLALWYVDDARRDTLVASVRRQGETASLSDTWLPLAGPDQDAVAQFTARRQQQGQ
PRQAFLSAPVTRVNLRRVQALAAEGWQFWCYQREWLRHGCLGGIFPEPDAMAGALESQLFSSAATPLSLEGLFASSPPSV
LYSAREWIRGDARNDVSWLEVPESVIAQRHWRWLAFGLAAGALLIGGLIGWLAWRREALRQRRRLAMRNDQVTDLPGRFL
LERRLQNFMEDAYAVSLYYLAFDSLRHLRAQFGVEYANVAAQCVAERLRGTCGGVCYPARLSDDVFVVMASGAQDPMALA
QRYQEDFDTPIEVHGVPHRLEPRIGVAISPEHGKTPTALLQAAQDAADQVLASAGTEPQFFQLDMLKTAERRRILAETLA
DALEEESPFFELYLQPQYRLAKRELVGAEALIRWHHPALGTISPGEFIPVAEASHQIVPLDEKVFDAMLAWLSHNIMWPK
EGMANGRSLVWAINLSIRHFDDMRFTDWLLARCKKYGIAPQSIELEVTEHVATQDLGQVRQVMRTLRLHGFGLVLDDFGA
GYTSLRFLKELPFTKVKLDKVYVDSIADDERSQLLVKGITDLARGLGLTVVAEGIETQEQLDILRGLGCPIGQGYLLGRP
GPVDDFLYRLADKRAVTMVSSSR
>Mature_822_residues
ATKGRWRLAMTIEPRRLARMAMASCLMFVACWQAVPGQAAEPPANAMIVVPSQLALQSDAPLLADLRERLASRVGEANVT
LEILGDDRFPTSTMLHRWRETMAHRQPVGSEASEEYVVLMHDAAVRAYRGLEPPMKNAHAVAYGVRDSALREWLKDNRIP
HVALDTYAERSLHWALGARRAEAGPLALWYVDDARRDTLVASVRRQGETASLSDTWLPLAGPDQDAVAQFTARRQQQGQP
RQAFLSAPVTRVNLRRVQALAAEGWQFWCYQREWLRHGCLGGIFPEPDAMAGALESQLFSSAATPLSLEGLFASSPPSVL
YSAREWIRGDARNDVSWLEVPESVIAQRHWRWLAFGLAAGALLIGGLIGWLAWRREALRQRRRLAMRNDQVTDLPGRFLL
ERRLQNFMEDAYAVSLYYLAFDSLRHLRAQFGVEYANVAAQCVAERLRGTCGGVCYPARLSDDVFVVMASGAQDPMALAQ
RYQEDFDTPIEVHGVPHRLEPRIGVAISPEHGKTPTALLQAAQDAADQVLASAGTEPQFFQLDMLKTAERRRILAETLAD
ALEEESPFFELYLQPQYRLAKRELVGAEALIRWHHPALGTISPGEFIPVAEASHQIVPLDEKVFDAMLAWLSHNIMWPKE
GMANGRSLVWAINLSIRHFDDMRFTDWLLARCKKYGIAPQSIELEVTEHVATQDLGQVRQVMRTLRLHGFGLVLDDFGAG
YTSLRFLKELPFTKVKLDKVYVDSIADDERSQLLVKGITDLARGLGLTVVAEGIETQEQLDILRGLGCPIGQGYLLGRPG
PVDDFLYRLADKRAVTMVSSSR

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI87081921, Length=441, Percent_Identity=30.1587301587302, Blast_Score=196, Evalue=7e-51,
Organism=Escherichia coli, GI1787541, Length=434, Percent_Identity=28.5714285714286, Blast_Score=143, Evalue=4e-35,
Organism=Escherichia coli, GI226510982, Length=426, Percent_Identity=27.9342723004695, Blast_Score=139, Evalue=1e-33,
Organism=Escherichia coli, GI1786507, Length=254, Percent_Identity=33.8582677165354, Blast_Score=137, Evalue=3e-33,
Organism=Escherichia coli, GI1790496, Length=236, Percent_Identity=33.0508474576271, Blast_Score=135, Evalue=9e-33,
Organism=Escherichia coli, GI87081845, Length=273, Percent_Identity=32.2344322344322, Blast_Score=122, Evalue=1e-28,
Organism=Escherichia coli, GI87081980, Length=240, Percent_Identity=33.75, Blast_Score=118, Evalue=2e-27,
Organism=Escherichia coli, GI87082096, Length=256, Percent_Identity=30.859375, Blast_Score=111, Evalue=2e-25,
Organism=Escherichia coli, GI87081743, Length=253, Percent_Identity=32.8063241106719, Blast_Score=110, Evalue=4e-25,
Organism=Escherichia coli, GI1788502, Length=238, Percent_Identity=28.1512605042017, Blast_Score=100, Evalue=3e-22,
Organism=Escherichia coli, GI1787055, Length=378, Percent_Identity=24.0740740740741, Blast_Score=96, Evalue=1e-20,
Organism=Escherichia coli, GI1788849, Length=446, Percent_Identity=25.5605381165919, Blast_Score=90, Evalue=5e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 92051; Mature: 91919

Theoretical pI: Translated: 6.74; Mature: 6.74

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATKGRWRLAMTIEPRRLARMAMASCLMFVACWQAVPGQAAEPPANAMIVVPSQLALQSD
CCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCHHHHCCC
APLLADLRERLASRVGEANVTLEILGDDRFPTSTMLHRWRETMAHRQPVGSEASEEYVVL
CCHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEE
MHDAAVRAYRGLEPPMKNAHAVAYGVRDSALREWLKDNRIPHVALDTYAERSLHWALGAR
EEHHHHHHHHCCCCCCCCCCEEEECCHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHCC
RAEAGPLALWYVDDARRDTLVASVRRQGETASLSDTWLPLAGPDQDAVAQFTARRQQQGQ
CCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
PRQAFLSAPVTRVNLRRVQALAAEGWQFWCYQREWLRHGCLGGIFPEPDAMAGALESQLF
CHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH
SSAATPLSLEGLFASSPPSVLYSAREWIRGDARNDVSWLEVPESVIAQRHWRWLAFGLAA
HHCCCCEEECCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHH
GALLIGGLIGWLAWRREALRQRRRLAMRNDQVTDLPGRFLLERRLQNFMEDAYAVSLYYL
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
AFDSLRHLRAQFGVEYANVAAQCVAERLRGTCGGVCYPARLSDDVFVVMASGAQDPMALA
HHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCEEEEEECCCCCHHHHH
QRYQEDFDTPIEVHGVPHRLEPRIGVAISPEHGKTPTALLQAAQDAADQVLASAGTEPQF
HHHHHHCCCCEEECCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCE
FQLDMLKTAERRRILAETLADALEEESPFFELYLQPQYRLAKRELVGAEALIRWHHPALG
EEHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCC
TISPGEFIPVAEASHQIVPLDEKVFDAMLAWLSHNIMWPKEGMANGRSLVWAINLSIRHF
CCCCCCEEECCCCCCCEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEEEEEC
DDMRFTDWLLARCKKYGIAPQSIELEVTEHVATQDLGQVRQVMRTLRLHGFGLVLDDFGA
CCCHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCC
GYTSLRFLKELPFTKVKLDKVYVDSIADDERSQLLVKGITDLARGLGLTVVAEGIETQEQ
CHHHHHHHHHCCCCEEEEHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEECCCCHHHH
LDILRGLGCPIGQGYLLGRPGPVDDFLYRLADKRAVTMVSSSR
HHHHHHCCCCCCCCEECCCCCCHHHHHHHHHCCCEEEEECCCC
>Mature Secondary Structure 
ATKGRWRLAMTIEPRRLARMAMASCLMFVACWQAVPGQAAEPPANAMIVVPSQLALQSD
CCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCHHHHCCC
APLLADLRERLASRVGEANVTLEILGDDRFPTSTMLHRWRETMAHRQPVGSEASEEYVVL
CCHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEE
MHDAAVRAYRGLEPPMKNAHAVAYGVRDSALREWLKDNRIPHVALDTYAERSLHWALGAR
EEHHHHHHHHCCCCCCCCCCEEEECCHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHCC
RAEAGPLALWYVDDARRDTLVASVRRQGETASLSDTWLPLAGPDQDAVAQFTARRQQQGQ
CCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
PRQAFLSAPVTRVNLRRVQALAAEGWQFWCYQREWLRHGCLGGIFPEPDAMAGALESQLF
CHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH
SSAATPLSLEGLFASSPPSVLYSAREWIRGDARNDVSWLEVPESVIAQRHWRWLAFGLAA
HHCCCCEEECCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHH
GALLIGGLIGWLAWRREALRQRRRLAMRNDQVTDLPGRFLLERRLQNFMEDAYAVSLYYL
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
AFDSLRHLRAQFGVEYANVAAQCVAERLRGTCGGVCYPARLSDDVFVVMASGAQDPMALA
HHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCEEEEEECCCCCHHHHH
QRYQEDFDTPIEVHGVPHRLEPRIGVAISPEHGKTPTALLQAAQDAADQVLASAGTEPQF
HHHHHHCCCCEEECCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCE
FQLDMLKTAERRRILAETLADALEEESPFFELYLQPQYRLAKRELVGAEALIRWHHPALG
EEHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCC
TISPGEFIPVAEASHQIVPLDEKVFDAMLAWLSHNIMWPKEGMANGRSLVWAINLSIRHF
CCCCCCEEECCCCCCCEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEEEEEC
DDMRFTDWLLARCKKYGIAPQSIELEVTEHVATQDLGQVRQVMRTLRLHGFGLVLDDFGA
CCCHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCC
GYTSLRFLKELPFTKVKLDKVYVDSIADDERSQLLVKGITDLARGLGLTVVAEGIETQEQ
CHHHHHHHHHCCCCEEEEHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEECCCCHHHH
LDILRGLGCPIGQGYLLGRPGPVDDFLYRLADKRAVTMVSSSR
HHHHHHCCCCCCCCEECCCCCCHHHHHHHHHCCCEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]