Definition | Chromohalobacter salexigens DSM 3043 chromosome, complete genome. |
---|---|
Accession | NC_007963 |
Length | 3,696,649 |
Click here to switch to the map view.
The map label for this gene is 92113779
Identifier: 92113779
GI number: 92113779
Start: 1883049
End: 1884815
Strand: Direct
Name: 92113779
Synonym: Csal_1655
Alternate gene names: NA
Gene position: 1883049-1884815 (Clockwise)
Preceding gene: 92113778
Following gene: 92113780
Centisome position: 50.94
GC content: 68.19
Gene sequence:
>1767_bases ATGCCGCTACTCTCGCGTTTCTCCCGTGGCGTACGACGCCATGCGCTAACGGACCCCCTGGCCGGCTGCCTCGCCTGCGT GCTGGTCGGTCACGGTGGCGCCGTCATGGCCGACGATGTCGTGCCCTCGTTCATCGACGAACGTTCGCCCACCTCCACGC GTCAGCAGCAGGAGCAGCAAAGTACCCGCCGCACGCTGGACCTCAACGTCCAGCAGCCCAGCGCGGCGCCGGGCGTATCG GGCAATGCCCGCGTGGCCGTGCGTCACATCAACATTCGTGGCGGCTCGGTGTTCGAGCTGGAGACCCTCGCCGCGCCGCT CGAACCGCTGGTGGGCGAGACGGTGACCGTCGACCGCATCACCCAGGCCGTACGGCGCATCACCCAGCGCTATCAGGAGG CCGGCTATCCGATTTCCTACGCCTACCTGCCGGCGGACAACTTCGCCAACGGCAACGTCCAGGTGGTCGTGGTCGAAGGC TATATCGCCCGCGCCGAACTGGATATCGACAACGATGCCGTGGCGTCCCGCGTGCAGCGGCTGATCGAGCGCATGGCCGA GGAGCGCCCGCTGCGGCGCGAGCGCTTCGAGCGCTATACCGCGCTGATCGAGCGCATTCCCGGTGCCAGTCTCGCGGTCA ACGTGCCGCTGCCGCGTACCGTCAACGGCGCCACCACGGTGCGTGTCGAAGCGCGCGACATGCAGCGCATCGATGGCGGG TTGAGCCTCGATTACGACGACGAAGACGACACCCAGGCACTGGCCAGTGTGTCCACGCAGGCCAACACCCGCTATGCCGA GCGGCTGTCGGTGGCCGGCCTGCTGCCCATCGAGGACGACGACGAGTACCTGGCCGCCGAATACGGCCAGGCCCTGGGCA GCGACGGCCTGCGGCTCAAGCTCTCGGCCACTCATTTCGACGGTGACGACACCACCGACACGCAATTGCTCGGCGTGCCC ATCGAGGCCCGCGAAGCCAAGCGCCGGCAACGCTATCGCGGCGAGCTCGACTATCCGCTGCGCCTGTCCCGCGACACGCT CTGGGAAGTCGGCGGCGCCCTCGAATACCTCGATGAAGAGACTCGGTACCGTTACACCACCAGCGGCAACGACGAACTGC TGCGCGCCGACGAGACGCTGCGCTACGGCACCGCCGAGCTCAACACCCTGTATCGGCGCGTGAGTGCCGACCGGCTCTGG GAAGTCGGCGGTGAACTGCGCCAGGGGCTCGGGGACGCCGGCGGCAAGAGCGAGCTGGAGATCGCCACCCTCGGCGTCAC CGAGCGCGACGGCGACCCGCTGAACTACACCCGCCTGGGGCTGAACGGGCGTTGGGTGGAGTCGCTGGGCGAGCGCTGGC GTCTCACCACCCGCGCCGACGGCTTCTGGTCCGAGAACAGCCTGCCGCTGCCCGAACGCGGCAACTACGGCGGCACGCGC TTCGGGCGCGGCTACCCGGACGGCCAGGCCGAGGGCGACTACGGCTATGCCGGGGAAATCGAACTGCGCTTCCTGCAAGC CGTGCCCTGGGGCTGGGTGAGCCGGATCGAACCCTACCTGGTCGTCGACGGGGCACGCACCCGGTTCCACGACAACGACA TCGAATACAACCTCGCCTCGGCGGCCTTCGGACTCGAATTTACCGACAGCCGCTACTACCGGCTGGGGGTGGAGTACGCC CGGCCCATCGCCGAGGAAGATCTGGACACCGATAACCGGGAAGGGCGCATCAACGCCCGGCTTTCCTGGCAGTTCGACGG TGGCTAG
Upstream 100 bases:
>100_bases CCCACGACGACACCCCCCGATGTTCCGACATCGACGACGAGAGCCGCCACTGCCTGAATAACGAGCGGCTCCACCAGAAG ATGCACAGGGAAATCCAGTC
Downstream 100 bases:
>100_bases AGGCGAGCCACGCACGCCGCCGGCCGCCGACATTCACCAGTGCTGCAAGGCAGCGCCACAAGACGACAACGCGGGGAAAT CATCATGCGCAATTCACTGT
Product: hypothetical protein
Products: NA
Alternate protein names: Polypeptide-Transport-Associated Domain-Containing Protein; Activation/Secretion Signal Peptide Protein; Exported Protein; POTRA Domain ShlB-Type Family; Polypeptide-Transport-Associated Domain Protein ShlB-Type; ShlB-Type Family Protein; Hemolysin Activation/Secretion Signal Peptide Protein; Exported Heme Utilisation Related Protein; Heme/Hemopexin Utilization Protein
Number of amino acids: Translated: 588; Mature: 587
Protein sequence:
>588_residues MPLLSRFSRGVRRHALTDPLAGCLACVLVGHGGAVMADDVVPSFIDERSPTSTRQQQEQQSTRRTLDLNVQQPSAAPGVS GNARVAVRHINIRGGSVFELETLAAPLEPLVGETVTVDRITQAVRRITQRYQEAGYPISYAYLPADNFANGNVQVVVVEG YIARAELDIDNDAVASRVQRLIERMAEERPLRRERFERYTALIERIPGASLAVNVPLPRTVNGATTVRVEARDMQRIDGG LSLDYDDEDDTQALASVSTQANTRYAERLSVAGLLPIEDDDEYLAAEYGQALGSDGLRLKLSATHFDGDDTTDTQLLGVP IEAREAKRRQRYRGELDYPLRLSRDTLWEVGGALEYLDEETRYRYTTSGNDELLRADETLRYGTAELNTLYRRVSADRLW EVGGELRQGLGDAGGKSELEIATLGVTERDGDPLNYTRLGLNGRWVESLGERWRLTTRADGFWSENSLPLPERGNYGGTR FGRGYPDGQAEGDYGYAGEIELRFLQAVPWGWVSRIEPYLVVDGARTRFHDNDIEYNLASAAFGLEFTDSRYYRLGVEYA RPIAEEDLDTDNREGRINARLSWQFDGG
Sequences:
>Translated_588_residues MPLLSRFSRGVRRHALTDPLAGCLACVLVGHGGAVMADDVVPSFIDERSPTSTRQQQEQQSTRRTLDLNVQQPSAAPGVS GNARVAVRHINIRGGSVFELETLAAPLEPLVGETVTVDRITQAVRRITQRYQEAGYPISYAYLPADNFANGNVQVVVVEG YIARAELDIDNDAVASRVQRLIERMAEERPLRRERFERYTALIERIPGASLAVNVPLPRTVNGATTVRVEARDMQRIDGG LSLDYDDEDDTQALASVSTQANTRYAERLSVAGLLPIEDDDEYLAAEYGQALGSDGLRLKLSATHFDGDDTTDTQLLGVP IEAREAKRRQRYRGELDYPLRLSRDTLWEVGGALEYLDEETRYRYTTSGNDELLRADETLRYGTAELNTLYRRVSADRLW EVGGELRQGLGDAGGKSELEIATLGVTERDGDPLNYTRLGLNGRWVESLGERWRLTTRADGFWSENSLPLPERGNYGGTR FGRGYPDGQAEGDYGYAGEIELRFLQAVPWGWVSRIEPYLVVDGARTRFHDNDIEYNLASAAFGLEFTDSRYYRLGVEYA RPIAEEDLDTDNREGRINARLSWQFDGG >Mature_587_residues PLLSRFSRGVRRHALTDPLAGCLACVLVGHGGAVMADDVVPSFIDERSPTSTRQQQEQQSTRRTLDLNVQQPSAAPGVSG NARVAVRHINIRGGSVFELETLAAPLEPLVGETVTVDRITQAVRRITQRYQEAGYPISYAYLPADNFANGNVQVVVVEGY IARAELDIDNDAVASRVQRLIERMAEERPLRRERFERYTALIERIPGASLAVNVPLPRTVNGATTVRVEARDMQRIDGGL SLDYDDEDDTQALASVSTQANTRYAERLSVAGLLPIEDDDEYLAAEYGQALGSDGLRLKLSATHFDGDDTTDTQLLGVPI EAREAKRRQRYRGELDYPLRLSRDTLWEVGGALEYLDEETRYRYTTSGNDELLRADETLRYGTAELNTLYRRVSADRLWE VGGELRQGLGDAGGKSELEIATLGVTERDGDPLNYTRLGLNGRWVESLGERWRLTTRADGFWSENSLPLPERGNYGGTRF GRGYPDGQAEGDYGYAGEIELRFLQAVPWGWVSRIEPYLVVDGARTRFHDNDIEYNLASAAFGLEFTDSRYYRLGVEYAR PIAEEDLDTDNREGRINARLSWQFDGG
Specific function: Unknown
COG id: COG2831
COG function: function code U; Hemolysin activation/secretion protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 65661; Mature: 65529
Theoretical pI: Translated: 4.56; Mature: 4.56
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 1.0 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 0.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPLLSRFSRGVRRHALTDPLAGCLACVLVGHGGAVMADDVVPSFIDERSPTSTRQQQEQQ CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHCCCCCHHHHHHHHH STRRTLDLNVQQPSAAPGVSGNARVAVRHINIRGGSVFELETLAAPLEPLVGETVTVDRI HHHCEEEEEEECCCCCCCCCCCCEEEEEEEEECCCCEEEHHHHHCCHHHHCCCEEEHHHH TQAVRRITQRYQEAGYPISYAYLPADNFANGNVQVVVVEGYIARAELDIDNDAVASRVQR HHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEEEEECEEEEEEECCCCHHHHHHHHH LIERMAEERPLRRERFERYTALIERIPGASLAVNVPLPRTVNGATTVRVEARDMQRIDGG HHHHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCEEEEEEHHHHHHHCCC LSLDYDDEDDTQALASVSTQANTRYAERLSVAGLLPIEDDDEYLAAEYGQALGSDGLRLK CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCHHHHHHHHHHCCCCEEEE LSATHFDGDDTTDTQLLGVPIEAREAKRRQRYRGELDYPLRLSRDTLWEVGGALEYLDEE EEEEECCCCCCCCCEEEECCCHHHHHHHHHHHCCCCCCCEEECCHHHHHHCCHHHHHCCC TRYRYTTSGNDELLRADETLRYGTAELNTLYRRVSADRLWEVGGELRQGLGDAGGKSELE CCEEEECCCCCCEEECCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEE IATLGVTERDGDPLNYTRLGLNGRWVESLGERWRLTTRADGFWSENSLPLPERGNYGGTR EEEEECCCCCCCCCCEEEECCCCHHHHHHHHHEEEEECCCCCCCCCCCCCCCCCCCCCCC FGRGYPDGQAEGDYGYAGEIELRFLQAVPWGWVSRIEPYLVVDGARTRFHDNDIEYNLAS CCCCCCCCCCCCCCCCCCCEEEEEEECCCCHHHHHCCCEEEECCCCCEECCCCCCEEEHH AAFGLEFTDSRYYRLGVEYARPIAEEDLDTDNREGRINARLSWQFDGG HEECCEECCCCEEEECHHHHCCCHHHCCCCCCCCCEEEEEEEEEECCC >Mature Secondary Structure PLLSRFSRGVRRHALTDPLAGCLACVLVGHGGAVMADDVVPSFIDERSPTSTRQQQEQQ CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHCCCCCHHHHHHHHH STRRTLDLNVQQPSAAPGVSGNARVAVRHINIRGGSVFELETLAAPLEPLVGETVTVDRI HHHCEEEEEEECCCCCCCCCCCCEEEEEEEEECCCCEEEHHHHHCCHHHHCCCEEEHHHH TQAVRRITQRYQEAGYPISYAYLPADNFANGNVQVVVVEGYIARAELDIDNDAVASRVQR HHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEEEEECEEEEEEECCCCHHHHHHHHH LIERMAEERPLRRERFERYTALIERIPGASLAVNVPLPRTVNGATTVRVEARDMQRIDGG HHHHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCEEEEEEHHHHHHHCCC LSLDYDDEDDTQALASVSTQANTRYAERLSVAGLLPIEDDDEYLAAEYGQALGSDGLRLK CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCHHHHHHHHHHCCCCEEEE LSATHFDGDDTTDTQLLGVPIEAREAKRRQRYRGELDYPLRLSRDTLWEVGGALEYLDEE EEEEECCCCCCCCCEEEECCCHHHHHHHHHHHCCCCCCCEEECCHHHHHHCCHHHHHCCC TRYRYTTSGNDELLRADETLRYGTAELNTLYRRVSADRLWEVGGELRQGLGDAGGKSELE CCEEEECCCCCCEEECCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEE IATLGVTERDGDPLNYTRLGLNGRWVESLGERWRLTTRADGFWSENSLPLPERGNYGGTR EEEEECCCCCCCCCCEEEECCCCHHHHHHHHHEEEEECCCCCCCCCCCCCCCCCCCCCCC FGRGYPDGQAEGDYGYAGEIELRFLQAVPWGWVSRIEPYLVVDGARTRFHDNDIEYNLAS CCCCCCCCCCCCCCCCCCCEEEEEEECCCCHHHHHCCCEEEECCCCCEECCCCCCEEEHH AAFGLEFTDSRYYRLGVEYARPIAEEDLDTDNREGRINARLSWQFDGG HEECCEECCCCEEEECHHHHCCCHHHCCCCCCCCCEEEEEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA