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The map label for this gene is ydcN [H]

Identifier: 92113766

GI number: 92113766

Start: 1869585

End: 1870145

Strand: Direct

Name: ydcN [H]

Synonym: Csal_1642

Alternate gene names: 92113766

Gene position: 1869585-1870145 (Clockwise)

Preceding gene: 92113764

Following gene: 92113773

Centisome position: 50.58

GC content: 67.91

Gene sequence:

>561_bases
ATGCAGGATCCAACCGCTCATATCGCCGCGACGCTCAAGACGCTGCGCGGCGCGCAAGGCTGGAGTCTCGATCGTGCCGC
GCGCGCGACCGGGGTCAGCAAGGCCATGCTGGGGCAGATCGAGCGCGGCGAGTCCAGTCCCACGGTGGCCACGCTGTGGA
AAATCGCCGGCGGTTTCCGCGTGTCGTTCTCGCTGTTCTTCGAACAGGCCTCGGTCCAGGGCATCGTCCCCAATGGCGAG
GCCGCGCCCACGGTGCTGGAAGATGCCGCCGCCGGCATGACGGTCACGCCGCTTTTCGCCTTCGATCCACGCCTGCGCTT
CGAGATGTTCCTGATCGAACTGGCGCCGGGGGCCTGCAGCGAGTCGTCACCGCACGAACCGGGCGTCGTCGAGCACGTGG
TGATGCTCGACGGCACTCTGGAACTGGCGCTCGACGGTCGCTGGGAAGCCCTCCGGCCGGGTGAGGCGCGCCGCTTCGCC
GCCGACCGCGAGCATGGCTATCGCAATGTCGGCGAGCGAGCGGCGCGCTTTCACGACGTGATTCATTACCCGCAGCTCTA
G

Upstream 100 bases:

>100_bases
GTTATAACGCACGATAGCAGCGCCGATGATGGCGTACAATGAGAAGGGGAACCACGCAGGTAGGGATGCATCAGCGAACC
GGCTAAGGACGAGGCCCCAT

Downstream 100 bases:

>100_bases
TCACGGTGAAACGCTATGGGTTGCCACGATGATCAGCAGCAAGCTGCCGCGAGAGCGCTATAACCCCTTCCCTGGACGCT
ACATTCGTCATCCCTGACGA

Product: XRE family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 186; Mature: 186

Protein sequence:

>186_residues
MQDPTAHIAATLKTLRGAQGWSLDRAARATGVSKAMLGQIERGESSPTVATLWKIAGGFRVSFSLFFEQASVQGIVPNGE
AAPTVLEDAAAGMTVTPLFAFDPRLRFEMFLIELAPGACSESSPHEPGVVEHVVMLDGTLELALDGRWEALRPGEARRFA
ADREHGYRNVGERAARFHDVIHYPQL

Sequences:

>Translated_186_residues
MQDPTAHIAATLKTLRGAQGWSLDRAARATGVSKAMLGQIERGESSPTVATLWKIAGGFRVSFSLFFEQASVQGIVPNGE
AAPTVLEDAAAGMTVTPLFAFDPRLRFEMFLIELAPGACSESSPHEPGVVEHVVMLDGTLELALDGRWEALRPGEARRFA
ADREHGYRNVGERAARFHDVIHYPQL
>Mature_186_residues
MQDPTAHIAATLKTLRGAQGWSLDRAARATGVSKAMLGQIERGESSPTVATLWKIAGGFRVSFSLFFEQASVQGIVPNGE
AAPTVLEDAAAGMTVTPLFAFDPRLRFEMFLIELAPGACSESSPHEPGVVEHVVMLDGTLELALDGRWEALRPGEARRFA
ADREHGYRNVGERAARFHDVIHYPQL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787704, Length=185, Percent_Identity=55.1351351351351, Blast_Score=206, Evalue=1e-54,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013096
- InterPro:   IPR011051
- InterPro:   IPR001387
- InterPro:   IPR010982
- InterPro:   IPR014710 [H]

Pfam domain/function: PF07883 Cupin_2; PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 20198; Mature: 20198

Theoretical pI: Translated: 5.94; Mature: 5.94

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQDPTAHIAATLKTLRGAQGWSLDRAARATGVSKAMLGQIERGESSPTVATLWKIAGGFR
CCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCHHHHHHHHHHCCCCCCHHHHHHHHCCCEE
VSFSLFFEQASVQGIVPNGEAAPTVLEDAAAGMTVTPLFAFDPRLRFEMFLIELAPGACS
EEEEEEEECCCCEEECCCCCCCCHHHHHHCCCCEEEEEEECCCCCEEEEEEEEECCCCCC
ESSPHEPGVVEHVVMLDGTLELALDGRWEALRPGEARRFAADREHGYRNVGERAARFHDV
CCCCCCCCHHEEEEEECCEEEEEECCCCCCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHH
IHYPQL
HCCCCC
>Mature Secondary Structure
MQDPTAHIAATLKTLRGAQGWSLDRAARATGVSKAMLGQIERGESSPTVATLWKIAGGFR
CCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCHHHHHHHHHHCCCCCCHHHHHHHHCCCEE
VSFSLFFEQASVQGIVPNGEAAPTVLEDAAAGMTVTPLFAFDPRLRFEMFLIELAPGACS
EEEEEEEECCCCEEECCCCCCCCHHHHHHCCCCEEEEEEECCCCCEEEEEEEEECCCCCC
ESSPHEPGVVEHVVMLDGTLELALDGRWEALRPGEARRFAADREHGYRNVGERAARFHDV
CCCCCCCCHHEEEEEECCEEEEEECCCCCCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHH
IHYPQL
HCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]