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The map label for this gene is nlpD [C]

Identifier: 91788919

GI number: 91788919

Start: 3224039

End: 3224995

Strand: Reverse

Name: nlpD [C]

Synonym: Bpro_3059

Alternate gene names: 91788919

Gene position: 3224995-3224039 (Counterclockwise)

Preceding gene: 91788920

Following gene: 91788917

Centisome position: 62.02

GC content: 64.68

Gene sequence:

>957_bases
ATGAATCAAACCTTTAGGTCGAACAGCGCAAAGTCTGTCGTCATCTCGGGCGCTGGCCAGGGCATCCGCACCCGGCTGGC
CAATTTGACGCTGCCGTGCGCTTTGGCTGCCACCCTGCTGCTGGCAGCGGGCTGCGCCTCGCGCTCCCCCACCCACGCGC
CGGTTGAAGACCGCGGTACGGGGCTGTCGCGCCAGCTTCCCGCTGCGGTCGACCCCGCCAACATCAAGCAGCCGCCAGGT
TTTGAAAATGCCGGAAAACCCGGTTACTACACCGTTAAACCTGGCGACACCATGATCCGCATTGGCCTGGAAAACGGCCA
GAACTGGCGCGACATCGTGCGCTGGAACAACCTTGACAATCCCAACGTGATTGAAGTTGGGCAAGTGCTTCGCGTCGTAC
CGCCCGCCAGCGAAACCACCGCCGTGGTGACACGGCCGGTGTCGCCCGGCTCGGCTGCAAGCGCAACCGCCATCCCGCCG
GCCCAGGCCGTCAGCGGCGCCCGGCCTGCGTCGGCGCCAGCCAGTGCTGGCGCTGCTCCAGCCGCTGCGGTAGCTGCGCC
CAGCGCTGCACCAGCGGCCACGGGGGATGAAGACGTGGGATGGATCTGGCCCGCCCATGGCACGCTGCTGACGGGGTTTG
ACGAGGCCAAAAACAAGGGCGTCGATATCGCGGGCAGGGCCGGTGATGCGGTGCTTGCTTCTGCCGATGGCCGGGTCGTG
TACGCGGGCGCGGGCCTGCGGGGCTACGGCAACCTGGTCATCCTCAAGCACAACAACACCTTTCTCACGGCCTACGCGCA
CAACCAGACGCTGCTGGTCAAGGAAGACCAGACGGTCAAAAAGGGCCAGAAGATTGCAGAGATGGGCAATACGGACGCTG
ACCGCGTGAAGTTGCATTTCGAGATTCGCCGCCAGGGCAAACCTGTGGACCCAGCGAAATACCTGCCCCCCAAGTAA

Upstream 100 bases:

>100_bases
CTGAAGATGGCTTGAACAGCCCATGAAGATCTCATGAAATATCCCATGAAGATCGAGTCCATATTGAAGTCATATTGAAG
TCAAGAAGACGAAAGAACCA

Downstream 100 bases:

>100_bases
TTCGCGTTTCCAGGTTGCACCTGCCTGCCGAAAAAAGCCCCGCACTGCGGGGCTTTTTTCGGCAGGGATCGGCGAACGGC
AGGCGAGCGATGCGCCTATA

Product: peptidase M23B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 318; Mature: 318

Protein sequence:

>318_residues
MNQTFRSNSAKSVVISGAGQGIRTRLANLTLPCALAATLLLAAGCASRSPTHAPVEDRGTGLSRQLPAAVDPANIKQPPG
FENAGKPGYYTVKPGDTMIRIGLENGQNWRDIVRWNNLDNPNVIEVGQVLRVVPPASETTAVVTRPVSPGSAASATAIPP
AQAVSGARPASAPASAGAAPAAAVAAPSAAPAATGDEDVGWIWPAHGTLLTGFDEAKNKGVDIAGRAGDAVLASADGRVV
YAGAGLRGYGNLVILKHNNTFLTAYAHNQTLLVKEDQTVKKGQKIAEMGNTDADRVKLHFEIRRQGKPVDPAKYLPPK

Sequences:

>Translated_318_residues
MNQTFRSNSAKSVVISGAGQGIRTRLANLTLPCALAATLLLAAGCASRSPTHAPVEDRGTGLSRQLPAAVDPANIKQPPG
FENAGKPGYYTVKPGDTMIRIGLENGQNWRDIVRWNNLDNPNVIEVGQVLRVVPPASETTAVVTRPVSPGSAASATAIPP
AQAVSGARPASAPASAGAAPAAAVAAPSAAPAATGDEDVGWIWPAHGTLLTGFDEAKNKGVDIAGRAGDAVLASADGRVV
YAGAGLRGYGNLVILKHNNTFLTAYAHNQTLLVKEDQTVKKGQKIAEMGNTDADRVKLHFEIRRQGKPVDPAKYLPPK
>Mature_318_residues
MNQTFRSNSAKSVVISGAGQGIRTRLANLTLPCALAATLLLAAGCASRSPTHAPVEDRGTGLSRQLPAAVDPANIKQPPG
FENAGKPGYYTVKPGDTMIRIGLENGQNWRDIVRWNNLDNPNVIEVGQVLRVVPPASETTAVVTRPVSPGSAASATAIPP
AQAVSGARPASAPASAGAAPAAAVAAPSAAPAATGDEDVGWIWPAHGTLLTGFDEAKNKGVDIAGRAGDAVLASADGRVV
YAGAGLRGYGNLVILKHNNTFLTAYAHNQTLLVKEDQTVKKGQKIAEMGNTDADRVKLHFEIRRQGKPVDPAKYLPPK

Specific function: May Be Involved In Stationary-Phase Survival. [C]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell inner membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI1789099, Length=286, Percent_Identity=37.7622377622378, Blast_Score=175, Evalue=3e-45,
Organism=Escherichia coli, GI87082174, Length=231, Percent_Identity=39.3939393939394, Blast_Score=164, Evalue=1e-41,
Organism=Escherichia coli, GI87082297, Length=120, Percent_Identity=38.3333333333333, Blast_Score=71, Evalue=8e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF01551 Peptidase_M23 [H]

EC number: NA

Molecular weight: Translated: 32921; Mature: 32921

Theoretical pI: Translated: 10.04; Mature: 10.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNQTFRSNSAKSVVISGAGQGIRTRLANLTLPCALAATLLLAAGCASRSPTHAPVEDRGT
CCCCCCCCCCCEEEEECCCCCHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCHHCCC
GLSRQLPAAVDPANIKQPPGFENAGKPGYYTVKPGDTMIRIGLENGQNWRDIVRWNNLDN
CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEEEECCCCCCHHHHHEECCCCC
PNVIEVGQVLRVVPPASETTAVVTRPVSPGSAASATAIPPAQAVSGARPASAPASAGAAP
CCEEECCCHHEECCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCC
AAAVAAPSAAPAATGDEDVGWIWPAHGTLLTGFDEAKNKGVDIAGRAGDAVLASADGRVV
HHHHCCCCCCCCCCCCCCCCEEECCCCEEEECCHHHHCCCCEEECCCCCEEEEECCCCEE
YAGAGLRGYGNLVILKHNNTFLTAYAHNQTLLVKEDQTVKKGQKIAEMGNTDADRVKLHF
EECCCCCCCCCEEEEEECCEEEEEEECCCEEEEECCCHHHHHHHHHHHCCCCCCEEEEEE
EIRRQGKPVDPAKYLPPK
EEECCCCCCCCCCCCCCC
>Mature Secondary Structure
MNQTFRSNSAKSVVISGAGQGIRTRLANLTLPCALAATLLLAAGCASRSPTHAPVEDRGT
CCCCCCCCCCCEEEEECCCCCHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCHHCCC
GLSRQLPAAVDPANIKQPPGFENAGKPGYYTVKPGDTMIRIGLENGQNWRDIVRWNNLDN
CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEEEECCCCCCHHHHHEECCCCC
PNVIEVGQVLRVVPPASETTAVVTRPVSPGSAASATAIPPAQAVSGARPASAPASAGAAP
CCEEECCCHHEECCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCC
AAAVAAPSAAPAATGDEDVGWIWPAHGTLLTGFDEAKNKGVDIAGRAGDAVLASADGRVV
HHHHCCCCCCCCCCCCCCCCEEECCCCEEEECCHHHHCCCCEEECCCCCEEEEECCCCEE
YAGAGLRGYGNLVILKHNNTFLTAYAHNQTLLVKEDQTVKKGQKIAEMGNTDADRVKLHF
EECCCCCCCCCEEEEEECCEEEEEEECCCEEEEECCCHHHHHHHHHHHCCCCCCEEEEEE
EIRRQGKPVDPAKYLPPK
EEECCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7959068; 10984043 [H]