Definition | Polaromonas sp. JS666 chromosome, complete genome. |
---|---|
Accession | NC_007948 |
Length | 5,200,264 |
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The map label for this gene is yjcG [C]
Identifier: 91788899
GI number: 91788899
Start: 3203172
End: 3205283
Strand: Reverse
Name: yjcG [C]
Synonym: Bpro_3039
Alternate gene names: 91788899
Gene position: 3205283-3203172 (Counterclockwise)
Preceding gene: 91788900
Following gene: 91788897
Centisome position: 61.64
GC content: 61.98
Gene sequence:
>2112_bases ATGGCCGGATTTTTCGGGTCCCGTGAAGGGGAGCGACTCTCAAAGCAGCAGTTCAAGGCCCAGCTGAACCAGGTTTACTG CTGGTACACGGTGGGCCTGGTGCTGTTTGTGGCGGTGCTCGCCGGCCTGGAGCGCCTGGGAATGCCCCGGTTGTGGATAG GCTCCACCTTTCTGATGGCCACCATTGGCCTGTATGCGGGTATCGGGATCATGAGCCGTACCACTGACGCGGCCGAATAT TACGTGGCGGGCCGCCGCGTCCCGGCGGTCTACAACGGCATGGCTACCGGGGCTGACTGGATGTCGGCGGCATCTTTTAT CGGCCTGGCGGGAACGCTGTACCTCACGGGTTACAGCGGTTTGGCTTTCATCATGGGCTGGACGGGCGGCTATTGCCTGG TCGCGCTGGTGCTGGCGCCTTACCTTCGCAAGTTTGGCCAGTTCACCATCCCGGATTTCCTGGGCGAGCGCTACGGTGGA AGCCTGCCCAGGTTCATCGGGGTGATAGCCGCCATCCTGTGTTCCTTTACTTACCTGGTGGCCCAGATTTATGGTGTCGG CCTGATCACGTCCTATCTCACGGGTATCGCGTTCGAGCTCGGGATTTTCCTCGGGCTGGGCGGTATTTTGGTGTGCTCAT TCCTGGGTGGAATGCGCGCCGTGACCTGGACCCAGGTGGCCCAATACATCATTTTGGTCGTGGCTTACCTGATTCCGGTG ATCTGGCTGTCGGCCAAGCAAACCGGCGTACCGGTGCCGCAACTGGTTTACGGCTATCAGCTGGAAAAGGTCACCGCCAA GGAAAAGCAGCTGGCCAATGATCCTGGGGAACAGCAGGTGCGGGCGCTCTTCCGGCAGCGATCGGAGGCGCTGGCCAACA AGATCGAGGATCCCGCGGCGTCATTGACCGCCGACCGGCTGGATGCCAGCCGGAAGATGGAGGAATTGAAGAGTGGTAAC GCCTCCGTTGCGCAGGTGTCTGCAGCGGCGAGGGCGCTGGCGGCAATGCCCAGGAACGAGGCGGCCGCGGTCCGCAGCTG GTCGGCCGCCAAAGCCACTGCGGACATCAAGAGCCAGCCGCTCAACGGCATGCCGCCCCACGCGGCCCAGTTTTCCGGTG ACCCGGACGGCACGCCAAAAGAAAAAGTGCTTTACGACACGTCGCGCCGGAATTTCCTGGCGCTGGTCTTTTGTCTCATG GTGGGTACGGCCGCCTTGCCGCACATCCTGATGCGCTACTACACCGTCCCCAGCGTGCGGGAGGCGCGCCAGTCGGTCAC CTGGTCGCTGTTTTTTATCTGCCTGCTGTACTTCACGGCGCCGGCCCTGGCCGTGCTGGTGAAATATGAAATTTTCACCG TGCTGGTGGGCATGCCGTTTGACCATCTGCCTGCCTGGGTCAACACCTGGAGCAGGGTGGACCCATCGCTGCTGTCGGTC ACCGATGTCAACAAGGACAACATCCTGCAACTCAATGAAATGACGGTAGGCGGCGACGTCATCGTGCTGCTCACTCCTGA GCTTGCAGGGCTGCCTTACGTTATTTCAGCGCTGGTGGCGGCCGGTGGTCTGGCGGCCGCGCTCTCCACCGCAGACGGGC TGCTGCTGACGATTGCCAATGCGCTGGGGCATGACCTGTATTACAAGATGATCGACCCCAACGCCTCGACGGTCAGCCGG GTGACGGTGTCCAAGATTCTGCTGCTCGTCGTGGCCCTGACGGCGGCCTATGTGGCGGCGCAAAAACCGGCCGACATCCT GTTTCTTGTGTCGGCGGCTTTTTCCTTTGCGGCGGCCTCGTTTTTCCCGGCGCTGAGCCTGGGCATTTTCTGGAAACGCG CGACCGGTATTGCGGCGGTGCTGGGCATGATGGCGGGCCTGGGCGTGACTTCCTTCTACATGCTGACCACCCAGCCGTGG CTGCGGGAGGCCTTCGGCGTCACCTCGCCCATCCAGCTCTGGTGGGGGATCGAGCCCATTTCTGCAGGGCTGTTTGGCGT CCCGGTCGGGTTTGCCGTGATCGTGCTGGTCAGCCTGGTGACCCGTCCCCCTCCCCAGAAAGCCTGCGATCTGGTGGACC ATGTGCGTTATCCGGACCTGAAAAGCCTTTAA
Upstream 100 bases:
>100_bases GGTGTACTGCCTCATCATCGGGGTGTATGCGTGGTACATGAACCATCTGGATGTCAAGCATGGCGTGGCAGACCTCGCAG ATGATGGAGATCACTGAGCC
Downstream 100 bases:
>100_bases AAAGCCTTGAACGGCCCTTTGAAAGCGCCCTTGGCAGGACCTCGAACACCCGGATAGTATTTTCCAATTCAGGTATGAGC CTGAGCGAAGCCGGATAGAG
Product: Na+/solute symporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 703; Mature: 702
Protein sequence:
>703_residues MAGFFGSREGERLSKQQFKAQLNQVYCWYTVGLVLFVAVLAGLERLGMPRLWIGSTFLMATIGLYAGIGIMSRTTDAAEY YVAGRRVPAVYNGMATGADWMSAASFIGLAGTLYLTGYSGLAFIMGWTGGYCLVALVLAPYLRKFGQFTIPDFLGERYGG SLPRFIGVIAAILCSFTYLVAQIYGVGLITSYLTGIAFELGIFLGLGGILVCSFLGGMRAVTWTQVAQYIILVVAYLIPV IWLSAKQTGVPVPQLVYGYQLEKVTAKEKQLANDPGEQQVRALFRQRSEALANKIEDPAASLTADRLDASRKMEELKSGN ASVAQVSAAARALAAMPRNEAAAVRSWSAAKATADIKSQPLNGMPPHAAQFSGDPDGTPKEKVLYDTSRRNFLALVFCLM VGTAALPHILMRYYTVPSVREARQSVTWSLFFICLLYFTAPALAVLVKYEIFTVLVGMPFDHLPAWVNTWSRVDPSLLSV TDVNKDNILQLNEMTVGGDVIVLLTPELAGLPYVISALVAAGGLAAALSTADGLLLTIANALGHDLYYKMIDPNASTVSR VTVSKILLLVVALTAAYVAAQKPADILFLVSAAFSFAAASFFPALSLGIFWKRATGIAAVLGMMAGLGVTSFYMLTTQPW LREAFGVTSPIQLWWGIEPISAGLFGVPVGFAVIVLVSLVTRPPPQKACDLVDHVRYPDLKSL
Sequences:
>Translated_703_residues MAGFFGSREGERLSKQQFKAQLNQVYCWYTVGLVLFVAVLAGLERLGMPRLWIGSTFLMATIGLYAGIGIMSRTTDAAEY YVAGRRVPAVYNGMATGADWMSAASFIGLAGTLYLTGYSGLAFIMGWTGGYCLVALVLAPYLRKFGQFTIPDFLGERYGG SLPRFIGVIAAILCSFTYLVAQIYGVGLITSYLTGIAFELGIFLGLGGILVCSFLGGMRAVTWTQVAQYIILVVAYLIPV IWLSAKQTGVPVPQLVYGYQLEKVTAKEKQLANDPGEQQVRALFRQRSEALANKIEDPAASLTADRLDASRKMEELKSGN ASVAQVSAAARALAAMPRNEAAAVRSWSAAKATADIKSQPLNGMPPHAAQFSGDPDGTPKEKVLYDTSRRNFLALVFCLM VGTAALPHILMRYYTVPSVREARQSVTWSLFFICLLYFTAPALAVLVKYEIFTVLVGMPFDHLPAWVNTWSRVDPSLLSV TDVNKDNILQLNEMTVGGDVIVLLTPELAGLPYVISALVAAGGLAAALSTADGLLLTIANALGHDLYYKMIDPNASTVSR VTVSKILLLVVALTAAYVAAQKPADILFLVSAAFSFAAASFFPALSLGIFWKRATGIAAVLGMMAGLGVTSFYMLTTQPW LREAFGVTSPIQLWWGIEPISAGLFGVPVGFAVIVLVSLVTRPPPQKACDLVDHVRYPDLKSL >Mature_702_residues AGFFGSREGERLSKQQFKAQLNQVYCWYTVGLVLFVAVLAGLERLGMPRLWIGSTFLMATIGLYAGIGIMSRTTDAAEYY VAGRRVPAVYNGMATGADWMSAASFIGLAGTLYLTGYSGLAFIMGWTGGYCLVALVLAPYLRKFGQFTIPDFLGERYGGS LPRFIGVIAAILCSFTYLVAQIYGVGLITSYLTGIAFELGIFLGLGGILVCSFLGGMRAVTWTQVAQYIILVVAYLIPVI WLSAKQTGVPVPQLVYGYQLEKVTAKEKQLANDPGEQQVRALFRQRSEALANKIEDPAASLTADRLDASRKMEELKSGNA SVAQVSAAARALAAMPRNEAAAVRSWSAAKATADIKSQPLNGMPPHAAQFSGDPDGTPKEKVLYDTSRRNFLALVFCLMV GTAALPHILMRYYTVPSVREARQSVTWSLFFICLLYFTAPALAVLVKYEIFTVLVGMPFDHLPAWVNTWSRVDPSLLSVT DVNKDNILQLNEMTVGGDVIVLLTPELAGLPYVISALVAAGGLAAALSTADGLLLTIANALGHDLYYKMIDPNASTVSRV TVSKILLLVVALTAAYVAAQKPADILFLVSAAFSFAAASFFPALSLGIFWKRATGIAAVLGMMAGLGVTSFYMLTTQPWL REAFGVTSPIQLWWGIEPISAGLFGVPVGFAVIVLVSLVTRPPPQKACDLVDHVRYPDLKSL
Specific function: Unknown
COG id: COG4147
COG function: function code R; Predicted symporter
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family [H]
Homologues:
Organism=Escherichia coli, GI1790503, Length=164, Percent_Identity=29.8780487804878, Blast_Score=89, Evalue=1e-18,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001734 - InterPro: IPR019899 [H]
Pfam domain/function: PF00474 SSF [H]
EC number: NA
Molecular weight: Translated: 75695; Mature: 75563
Theoretical pI: Translated: 8.94; Mature: 8.94
Prosite motif: PS00018 EF_HAND_1 ; PS50283 NA_SOLUT_SYMP_3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAGFFGSREGERLSKQQFKAQLNQVYCWYTVGLVLFVAVLAGLERLGMPRLWIGSTFLMA CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH TIGLYAGIGIMSRTTDAAEYYVAGRRVPAVYNGMATGADWMSAASFIGLAGTLYLTGYSG HHHHHHCCHHHHCCCHHHHHHHHCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHEEECCCH LAFIMGWTGGYCLVALVLAPYLRKFGQFTIPDFLGERYGGSLPRFIGVIAAILCSFTYLV HHHHHHCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH AQIYGVGLITSYLTGIAFELGIFLGLGGILVCSFLGGMRAVTWTQVAQYIILVVAYLIPV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH IWLSAKQTGVPVPQLVYGYQLEKVTAKEKQLANDPGEQQVRALFRQRSEALANKIEDPAA HHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHH SLTADRLDASRKMEELKSGNASVAQVSAAARALAAMPRNEAAAVRSWSAAKATADIKSQP HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHCCHHHHHHHHHHCCC LNGMPPHAAQFSGDPDGTPKEKVLYDTSRRNFLALVFCLMVGTAALPHILMRYYTVPSVR CCCCCCCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH EARQSVTWSLFFICLLYFTAPALAVLVKYEIFTVLVGMPFDHLPAWVNTWSRVDPSLLSV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCHHHHHHHHCCCCCEEE TDVNKDNILQLNEMTVGGDVIVLLTPELAGLPYVISALVAAGGLAAALSTADGLLLTIAN EECCCCCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH ALGHDLYYKMIDPNASTVSRVTVSKILLLVVALTAAYVAAQKPADILFLVSAAFSFAAAS HHCHHHEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH FFPALSLGIFWKRATGIAAVLGMMAGLGVTSFYMLTTQPWLREAFGVTSPIQLWWGIEPI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHCCCCHH SAGLFGVPVGFAVIVLVSLVTRPPPQKACDLVDHVRYPDLKSL HCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCC >Mature Secondary Structure AGFFGSREGERLSKQQFKAQLNQVYCWYTVGLVLFVAVLAGLERLGMPRLWIGSTFLMA CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH TIGLYAGIGIMSRTTDAAEYYVAGRRVPAVYNGMATGADWMSAASFIGLAGTLYLTGYSG HHHHHHCCHHHHCCCHHHHHHHHCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHEEECCCH LAFIMGWTGGYCLVALVLAPYLRKFGQFTIPDFLGERYGGSLPRFIGVIAAILCSFTYLV HHHHHHCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH AQIYGVGLITSYLTGIAFELGIFLGLGGILVCSFLGGMRAVTWTQVAQYIILVVAYLIPV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH IWLSAKQTGVPVPQLVYGYQLEKVTAKEKQLANDPGEQQVRALFRQRSEALANKIEDPAA HHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHH SLTADRLDASRKMEELKSGNASVAQVSAAARALAAMPRNEAAAVRSWSAAKATADIKSQP HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHCCHHHHHHHHHHCCC LNGMPPHAAQFSGDPDGTPKEKVLYDTSRRNFLALVFCLMVGTAALPHILMRYYTVPSVR CCCCCCCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH EARQSVTWSLFFICLLYFTAPALAVLVKYEIFTVLVGMPFDHLPAWVNTWSRVDPSLLSV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCHHHHHHHHCCCCCEEE TDVNKDNILQLNEMTVGGDVIVLLTPELAGLPYVISALVAAGGLAAALSTADGLLLTIAN EECCCCCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH ALGHDLYYKMIDPNASTVSRVTVSKILLLVVALTAAYVAAQKPADILFLVSAAFSFAAAS HHCHHHEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH FFPALSLGIFWKRATGIAAVLGMMAGLGVTSFYMLTTQPWLREAFGVTSPIQLWWGIEPI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHCCCCHH SAGLFGVPVGFAVIVLVSLVTRPPPQKACDLVDHVRYPDLKSL HCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 1356967 [H]