| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
Click here to switch to the map view.
The map label for this gene is dnaB [H]
Identifier: 91788893
GI number: 91788893
Start: 3197478
End: 3199943
Strand: Reverse
Name: dnaB [H]
Synonym: Bpro_3033
Alternate gene names: 91788893
Gene position: 3199943-3197478 (Counterclockwise)
Preceding gene: 91788894
Following gene: 91788890
Centisome position: 61.53
GC content: 60.06
Gene sequence:
>2466_bases ATGTCTGCCGTACTTTCTGCCTACAACGACCCCGGCTACAGCGCCGATCGGCAAATCGCCCAGCTGCGCATTCCGCCGCA CTCCATCGAAGGCGAATCCAGCGTACTGGGCGGCCTGCTGCTCGACAACGGCGCCTGGGACCGTGTGGGCGACCTGTTGA CCGATGAAGACTTCTATCGCCACGAGCACAAACTGATTTACGCCGCTGTTGGCGCGCTCATCAACGCTTCCAAGCCGGCC GACATCATCACGGTCTACGAGCACCTGCAGAACCAGGGCAAGGCTGACGAGGTGGGCGGCCTGGGCTACCTGAATTCGCT CGCGCAATACGTGCCCAGCGCCAGCAACATCCGCCGCTATGCGGAGATCGTGCGCGAGCGCTCCATCCTGCGCAAGCTGG TGTCGGCCTCCGACGAGATCTCCACCAACGCCTTCAACCCACAGGGCAAGGACGTCGCCACCATCCTCGACGAGGCCGAG CAGAAGATTTTCAAGATTGGCGAGCAGGGCTCGCGCATGAAGGAAGGCTTCCAGAGCATGGACACGCTGGTGGTCAGCCT GCTCGACCGCGTGACCGAAATGGCCGAGAACCCGCAGGACGTCACCGGCGTGCCCACGGGCTTCTACGATCTGGACCGCA TGACCTCCGGCTTCCAGGCCGGTGATCTGGTGATTCTTGCCGCCCGCCCATCGATGGGAAAAGCGCAGCCCCTGGATGCC CGCGTGCGCACCCGCACGGGCTGGAGCACGATGGGCGATTTGGCTGTGGGGGACGCGCTGGCTTCCGTTGATGGGCAACC ATCCATAGTGACAGCCGTATTTCCGCAGGGAGAGAAAGAGGTTTTTCGTATCAGTTTTTCTGACGGTCGCAGCACCGAAT GTTGCGCCGAACACCTGTGGCAGGTGCAATACCGCGAGTGGGATGTACCCAGAGTGGTCAATACGACCAGACTGTCTGTA ATGCTTCAATGCAAACGGTATATGAATCGTTTGTGGGTCGAGCCAGCCTCCGGTGAATTTGGCCATGAAGATCCTGTTCC GATTGATCCCTGGGTTCTGGGCGGTTTGTTGGGCGATGGGTGCCTGACTGGAGCGGGCACAGTGCGCTTTTCCACAGCTG CGCCGCAAATGCTGGCGCTCATGTCTGAGGGCTTGGGGCAAGGGATGTCGCTAAACCATGCGGGACGCTATGACTGGCGC ATTGCGCGGCAGAATGGCGCCCACGCCAAAGGGGTAGCCGGGGTGCAGTCCAATCCGTTGCGGTTGGGTTTGCAGGCGCT GGGTTTGTCGGGATTGCCGAGCGACAGAAAATTCATTCCACGCATCTACCTTGAAGCACAAAAAACCGTGCGCCTTGGCG TGTTGCGGGGGTTGCTTGACACCGATGGATGGGTCGAAAAATGGGGGAGCGTGCGGTTTTCTACCGCCAGTCATCAACTG GCGAAGGATGTTCAGGAACTTGTGCGCTCATTGGGTGGCTGGTGTTCCATCAACCAAAAGCAGCCGTACTTCACCAATGT CGCAGGGATGCGCATGGCGGGTTTACCAGCCTATGTCTGCAACATTTCCCACCCAGAACCAAAGACTTTGTTTTCATTGG CTGAAAAAGTTGCAAGGGCACCCGCCCAATGGCAGCGCGCAAAGCGTCTGACTGTTTCGTCCATCACGCCAACCCGCAAA GCGCTCTGCCAGTGCATTTCGGTCAGCCACCCCAGCAAGCTCTACATCACCGATCAGGACGTGGTGACCCACAACACCGC ACTGGCCATCAACATCGCCGAGCATGTGGCGCTGAACGAAGGCCTGCCGGTGGCGGTGTTCTCCATGGAGATGGGAGCCT CCCAGCTCGCCGTGCGTATCGTCGGCTCCATCGGCCGCATTGACCAGACCCATTTGCGCACCGGTGCCCTGACCGACGAA GAGTGGCCGCGTTTGACCGAAGCCATTGAAAAGCTGCGCACCGTCTCGTTGCACATTGACGAAACACCCGGTCTCACGGT GAGCGAGCTTCGCGCCAACGCGCGCCGCCTGGCCCGCCAGTGCGGCAAGCTCGGTTTGATCGTGGTCGATTATTTGCAGC TCATGAGCGTGTCGACCAGCATGAACGACGAGAACCGCGCGACGGCCGTCGGCGAAATTTCACGTGGCCTGAAAATGCTG GCCAAGGAACTGCAATGCCCCGTGATTGCCCTGTCACAGCTCAGCCGTGGCGTAGAGTCTCGCACCGACAAGCGTCCCAT GATGAGCGACCTGCGTGAGTCCGGCGCCATCGAGCAGGACGCCGACATCATCATGTTCATCTACCGCGACGAGTACTACA CCAAGGAGGCCTGCAAGGAGCCGGGTGTGGCCGAGGTCATCATCAGCAAGCAGCGTAACGGCCCCACGGGTACGGTGAAG CTGGCGTTTATCAACCGCATCACCAAGTTTGAGAGTCTGGCCAGCGGATCGAGCGGGGATTTCTAG
Upstream 100 bases:
>100_bases TTTACAGGGTTGTACCCCTGTTATTCACCATTTATAAACAGTGTTATCCGATGACGCCGTAGCACCGCGGCGATAGCATC CAAAGCTGTCAAGGAAACCC
Downstream 100 bases:
>100_bases ACGCGGCACGACGGACCGCGCCGAGAGGCCTCTTTCAGGGCCGGGCCAGCATTTCCCGCGCCAGCGCCGCCATGGCAGCC ACGCTGTGGTCCTGCGGCTG
Product: DnaB-like protein helicase-like protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 821; Mature: 820
Protein sequence:
>821_residues MSAVLSAYNDPGYSADRQIAQLRIPPHSIEGESSVLGGLLLDNGAWDRVGDLLTDEDFYRHEHKLIYAAVGALINASKPA DIITVYEHLQNQGKADEVGGLGYLNSLAQYVPSASNIRRYAEIVRERSILRKLVSASDEISTNAFNPQGKDVATILDEAE QKIFKIGEQGSRMKEGFQSMDTLVVSLLDRVTEMAENPQDVTGVPTGFYDLDRMTSGFQAGDLVILAARPSMGKAQPLDA RVRTRTGWSTMGDLAVGDALASVDGQPSIVTAVFPQGEKEVFRISFSDGRSTECCAEHLWQVQYREWDVPRVVNTTRLSV MLQCKRYMNRLWVEPASGEFGHEDPVPIDPWVLGGLLGDGCLTGAGTVRFSTAAPQMLALMSEGLGQGMSLNHAGRYDWR IARQNGAHAKGVAGVQSNPLRLGLQALGLSGLPSDRKFIPRIYLEAQKTVRLGVLRGLLDTDGWVEKWGSVRFSTASHQL AKDVQELVRSLGGWCSINQKQPYFTNVAGMRMAGLPAYVCNISHPEPKTLFSLAEKVARAPAQWQRAKRLTVSSITPTRK ALCQCISVSHPSKLYITDQDVVTHNTALAINIAEHVALNEGLPVAVFSMEMGASQLAVRIVGSIGRIDQTHLRTGALTDE EWPRLTEAIEKLRTVSLHIDETPGLTVSELRANARRLARQCGKLGLIVVDYLQLMSVSTSMNDENRATAVGEISRGLKML AKELQCPVIALSQLSRGVESRTDKRPMMSDLRESGAIEQDADIIMFIYRDEYYTKEACKEPGVAEVIISKQRNGPTGTVK LAFINRITKFESLASGSSGDF
Sequences:
>Translated_821_residues MSAVLSAYNDPGYSADRQIAQLRIPPHSIEGESSVLGGLLLDNGAWDRVGDLLTDEDFYRHEHKLIYAAVGALINASKPA DIITVYEHLQNQGKADEVGGLGYLNSLAQYVPSASNIRRYAEIVRERSILRKLVSASDEISTNAFNPQGKDVATILDEAE QKIFKIGEQGSRMKEGFQSMDTLVVSLLDRVTEMAENPQDVTGVPTGFYDLDRMTSGFQAGDLVILAARPSMGKAQPLDA RVRTRTGWSTMGDLAVGDALASVDGQPSIVTAVFPQGEKEVFRISFSDGRSTECCAEHLWQVQYREWDVPRVVNTTRLSV MLQCKRYMNRLWVEPASGEFGHEDPVPIDPWVLGGLLGDGCLTGAGTVRFSTAAPQMLALMSEGLGQGMSLNHAGRYDWR IARQNGAHAKGVAGVQSNPLRLGLQALGLSGLPSDRKFIPRIYLEAQKTVRLGVLRGLLDTDGWVEKWGSVRFSTASHQL AKDVQELVRSLGGWCSINQKQPYFTNVAGMRMAGLPAYVCNISHPEPKTLFSLAEKVARAPAQWQRAKRLTVSSITPTRK ALCQCISVSHPSKLYITDQDVVTHNTALAINIAEHVALNEGLPVAVFSMEMGASQLAVRIVGSIGRIDQTHLRTGALTDE EWPRLTEAIEKLRTVSLHIDETPGLTVSELRANARRLARQCGKLGLIVVDYLQLMSVSTSMNDENRATAVGEISRGLKML AKELQCPVIALSQLSRGVESRTDKRPMMSDLRESGAIEQDADIIMFIYRDEYYTKEACKEPGVAEVIISKQRNGPTGTVK LAFINRITKFESLASGSSGDF >Mature_820_residues SAVLSAYNDPGYSADRQIAQLRIPPHSIEGESSVLGGLLLDNGAWDRVGDLLTDEDFYRHEHKLIYAAVGALINASKPAD IITVYEHLQNQGKADEVGGLGYLNSLAQYVPSASNIRRYAEIVRERSILRKLVSASDEISTNAFNPQGKDVATILDEAEQ KIFKIGEQGSRMKEGFQSMDTLVVSLLDRVTEMAENPQDVTGVPTGFYDLDRMTSGFQAGDLVILAARPSMGKAQPLDAR VRTRTGWSTMGDLAVGDALASVDGQPSIVTAVFPQGEKEVFRISFSDGRSTECCAEHLWQVQYREWDVPRVVNTTRLSVM LQCKRYMNRLWVEPASGEFGHEDPVPIDPWVLGGLLGDGCLTGAGTVRFSTAAPQMLALMSEGLGQGMSLNHAGRYDWRI ARQNGAHAKGVAGVQSNPLRLGLQALGLSGLPSDRKFIPRIYLEAQKTVRLGVLRGLLDTDGWVEKWGSVRFSTASHQLA KDVQELVRSLGGWCSINQKQPYFTNVAGMRMAGLPAYVCNISHPEPKTLFSLAEKVARAPAQWQRAKRLTVSSITPTRKA LCQCISVSHPSKLYITDQDVVTHNTALAINIAEHVALNEGLPVAVFSMEMGASQLAVRIVGSIGRIDQTHLRTGALTDEE WPRLTEAIEKLRTVSLHIDETPGLTVSELRANARRLARQCGKLGLIVVDYLQLMSVSTSMNDENRATAVGEISRGLKMLA KELQCPVIALSQLSRGVESRTDKRPMMSDLRESGAIEQDADIIMFIYRDEYYTKEACKEPGVAEVIISKQRNGPTGTVKL AFINRITKFESLASGSSGDF
Specific function: Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity [H]
COG id: COG0305
COG function: function code L; Replicative DNA helicase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 SF4 helicase domain [H]
Homologues:
Organism=Escherichia coli, GI1790486, Length=246, Percent_Identity=50, Blast_Score=237, Evalue=2e-63,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007694 - InterPro: IPR006142 - InterPro: IPR004042 - InterPro: IPR006141 [H]
Pfam domain/function: PF03796 DnaB_C [H]
EC number: =3.6.4.12 [H]
Molecular weight: Translated: 89920; Mature: 89788
Theoretical pI: Translated: 6.79; Mature: 6.79
Prosite motif: PS50819 INTEIN_ENDONUCLEASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSAVLSAYNDPGYSADRQIAQLRIPPHSIEGESSVLGGLLLDNGAWDRVGDLLTDEDFYR CCCCCCCCCCCCCCCCCHHEEEECCCCCCCCCHHHHHHHEECCCCHHHHHHHCCCCHHHH HEHKLIYAAVGALINASKPADIITVYEHLQNQGKADEVGGLGYLNSLAQYVPSASNIRRY HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCHHHHHHH AEIVRERSILRKLVSASDEISTNAFNPQGKDVATILDEAEQKIFKIGEQGSRMKEGFQSM HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH DTLVVSLLDRVTEMAENPQDVTGVPTGFYDLDRMTSGFQAGDLVILAARPSMGKAQPLDA HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCC RVRTRTGWSTMGDLAVGDALASVDGQPSIVTAVFPQGEKEVFRISFSDGRSTECCAEHLW HHCCCCCCCHHCHHHHHHHHHCCCCCCCEEEEECCCCCCEEEEEEECCCCCHHHHHHHHH QVQYREWDVPRVVNTTRLSVMLQCKRYMNRLWVEPASGEFGHEDPVPIDPWVLGGLLGDG HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCC CLTGAGTVRFSTAAPQMLALMSEGLGQGMSLNHAGRYDWRIARQNGAHAKGVAGVQSNPL CCCCCCCEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCH RLGLQALGLSGLPSDRKFIPRIYLEAQKTVRLGVLRGLLDTDGWVEKWGSVRFSTASHQL HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCEEECHHHHHH AKDVQELVRSLGGWCSINQKQPYFTNVAGMRMAGLPAYVCNISHPEPKTLFSLAEKVARA HHHHHHHHHHCCCCEECCCCCCCCCCCCCCHHCCCCEEEEECCCCCHHHHHHHHHHHHHC PAQWQRAKRLTVSSITPTRKALCQCISVSHPSKLYITDQDVVTHNTALAINIAEHVALNE CHHHHHHHCCCHHCCCHHHHHHHHHHCCCCCCEEEEECCCEEECCCEEEEEHHHHHHHCC GLPVAVFSMEMGASQLAVRIVGSIGRIDQTHLRTGALTDEEWPRLTEAIEKLRTVSLHID CCCEEEEEEHHCHHHHHHHHHHHHCCCCHHHHCCCCCCCHHHHHHHHHHHHHHEEEEEEC ETPGLTVSELRANARRLARQCGKLGLIVVDYLQLMSVSTSMNDENRATAVGEISRGLKML CCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH AKELQCPVIALSQLSRGVESRTDKRPMMSDLRESGAIEQDADIIMFIYRDEYYTKEACKE HHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCEEEEEEECCHHHHHHHCC PGVAEVIISKQRNGPTGTVKLAFINRITKFESLASGSSGDF CCCEEHHEECCCCCCCCEEEEHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure SAVLSAYNDPGYSADRQIAQLRIPPHSIEGESSVLGGLLLDNGAWDRVGDLLTDEDFYR CCCCCCCCCCCCCCCCHHEEEECCCCCCCCCHHHHHHHEECCCCHHHHHHHCCCCHHHH HEHKLIYAAVGALINASKPADIITVYEHLQNQGKADEVGGLGYLNSLAQYVPSASNIRRY HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCHHHHHHH AEIVRERSILRKLVSASDEISTNAFNPQGKDVATILDEAEQKIFKIGEQGSRMKEGFQSM HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH DTLVVSLLDRVTEMAENPQDVTGVPTGFYDLDRMTSGFQAGDLVILAARPSMGKAQPLDA HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCC RVRTRTGWSTMGDLAVGDALASVDGQPSIVTAVFPQGEKEVFRISFSDGRSTECCAEHLW HHCCCCCCCHHCHHHHHHHHHCCCCCCCEEEEECCCCCCEEEEEEECCCCCHHHHHHHHH QVQYREWDVPRVVNTTRLSVMLQCKRYMNRLWVEPASGEFGHEDPVPIDPWVLGGLLGDG HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCC CLTGAGTVRFSTAAPQMLALMSEGLGQGMSLNHAGRYDWRIARQNGAHAKGVAGVQSNPL CCCCCCCEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCH RLGLQALGLSGLPSDRKFIPRIYLEAQKTVRLGVLRGLLDTDGWVEKWGSVRFSTASHQL HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCEEECHHHHHH AKDVQELVRSLGGWCSINQKQPYFTNVAGMRMAGLPAYVCNISHPEPKTLFSLAEKVARA HHHHHHHHHHCCCCEECCCCCCCCCCCCCCHHCCCCEEEEECCCCCHHHHHHHHHHHHHC PAQWQRAKRLTVSSITPTRKALCQCISVSHPSKLYITDQDVVTHNTALAINIAEHVALNE CHHHHHHHCCCHHCCCHHHHHHHHHHCCCCCCEEEEECCCEEECCCEEEEEHHHHHHHCC GLPVAVFSMEMGASQLAVRIVGSIGRIDQTHLRTGALTDEEWPRLTEAIEKLRTVSLHID CCCEEEEEEHHCHHHHHHHHHHHHCCCCHHHHCCCCCCCHHHHHHHHHHHHHHEEEEEEC ETPGLTVSELRANARRLARQCGKLGLIVVDYLQLMSVSTSMNDENRATAVGEISRGLKML CCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH AKELQCPVIALSQLSRGVESRTDKRPMMSDLRESGAIEQDADIIMFIYRDEYYTKEACKE HHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCEEEEEEECCHHHHHHHCC PGVAEVIISKQRNGPTGTVKLAFINRITKFESLASGSSGDF CCCEEHHEECCCCCCCCEEEEHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA