Definition | Polaromonas sp. JS666 chromosome, complete genome. |
---|---|
Accession | NC_007948 |
Length | 5,200,264 |
Click here to switch to the map view.
The map label for this gene is 91788861
Identifier: 91788861
GI number: 91788861
Start: 3162204
End: 3162719
Strand: Reverse
Name: 91788861
Synonym: Bpro_3001
Alternate gene names: NA
Gene position: 3162719-3162204 (Counterclockwise)
Preceding gene: 91788865
Following gene: 91788860
Centisome position: 60.82
GC content: 63.18
Gene sequence:
>516_bases ATGGCGCGGTTTTGCCCCGCCGACAATGGCTTTTTTGATCTACAGGAATTGATCATGCTCCTCCATCGTCAAGCAAGCCG TATTTCCCGTGCCGCCATCATGGTGGCGGCTGTGACCGCCATCACCGGCTGCGGCTTGATGGATCGCCAGTCCAACCTGG TGGCGTTTACCACCCAGTTGCGGGGCGCCAACGAGGTGCCGCCCACTGCCAGCCGCGCTACCGGCTCGGTCGACGCGGTG CTCAATAAAGACACCAACCTGTTTCGCTGGAAAGTCAGCTTCAGCGGCCTGACCGGGCCCGCCACGGGCGCCCACTTTCA CGGCCCTGCTGCCATTGGTGTCAACGCAGGTATTGTGCTGCCTTGGCAGGGCCCCATCGTCAGCCCCCTCGAAGGCCGGG CCACGCTGACGCCGACACAGGCTGCGGACCTGATGGCTGGCCGCTGGTACGCCAATATTCACACGGTGGCCAACCCCGCA GGCGAAGTACGTGGCCAGATGACAGTGCGCAATTAG
Upstream 100 bases:
>100_bases CCCATTAATTGCGGCGCCATGCCACCCCCGCGGCAACCAGGCTGGCCGCCTGGCGGGCATGTCGTCCCATGCCCGCCGGC CACACCGGGTTTATCCTACG
Downstream 100 bases:
>100_bases CGGGGCAGTGGCCTGATGGTTTCGCTGCGGTCCTGACTGTTTTGCGCGTCGGGGCGGGGAGCCACTGCGGCGGCCAAAAG CCATTCTGAGAAAATGGTTG
Product: chordin
Products: NA
Alternate protein names: CHRD Domain Containing Protein; Signal Peptide; CHRD Domain-Containing Superfamily; Chordin
Number of amino acids: Translated: 171; Mature: 170
Protein sequence:
>171_residues MARFCPADNGFFDLQELIMLLHRQASRISRAAIMVAAVTAITGCGLMDRQSNLVAFTTQLRGANEVPPTASRATGSVDAV LNKDTNLFRWKVSFSGLTGPATGAHFHGPAAIGVNAGIVLPWQGPIVSPLEGRATLTPTQAADLMAGRWYANIHTVANPA GEVRGQMTVRN
Sequences:
>Translated_171_residues MARFCPADNGFFDLQELIMLLHRQASRISRAAIMVAAVTAITGCGLMDRQSNLVAFTTQLRGANEVPPTASRATGSVDAV LNKDTNLFRWKVSFSGLTGPATGAHFHGPAAIGVNAGIVLPWQGPIVSPLEGRATLTPTQAADLMAGRWYANIHTVANPA GEVRGQMTVRN >Mature_170_residues ARFCPADNGFFDLQELIMLLHRQASRISRAAIMVAAVTAITGCGLMDRQSNLVAFTTQLRGANEVPPTASRATGSVDAVL NKDTNLFRWKVSFSGLTGPATGAHFHGPAAIGVNAGIVLPWQGPIVSPLEGRATLTPTQAADLMAGRWYANIHTVANPAG EVRGQMTVRN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18125; Mature: 17994
Theoretical pI: Translated: 10.23; Mature: 10.23
Prosite motif: PS50933 CHRD
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MARFCPADNGFFDLQELIMLLHRQASRISRAAIMVAAVTAITGCGLMDRQSNLVAFTTQL CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEC RGANEVPPTASRATGSVDAVLNKDTNLFRWKVSFSGLTGPATGAHFHGPAAIGVNAGIVL CCCCCCCCCCCCCCCCEEEEECCCCCEEEEEEEECCCCCCCCCCCCCCCEEECCCCCEEE PWQGPIVSPLEGRATLTPTQAADLMAGRWYANIHTVANPAGEVRGQMTVRN ECCCCCCCCCCCCEEECCCHHHHHHHCCEEEEEEECCCCCCCCCEEEEECC >Mature Secondary Structure ARFCPADNGFFDLQELIMLLHRQASRISRAAIMVAAVTAITGCGLMDRQSNLVAFTTQL CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEC RGANEVPPTASRATGSVDAVLNKDTNLFRWKVSFSGLTGPATGAHFHGPAAIGVNAGIVL CCCCCCCCCCCCCCCCEEEEECCCCCEEEEEEEECCCCCCCCCCCCCCCEEECCCCCEEE PWQGPIVSPLEGRATLTPTQAADLMAGRWYANIHTVANPAGEVRGQMTVRN ECCCCCCCCCCCCEEECCCHHHHHHHCCEEEEEEECCCCCCCCCEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA