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The map label for this gene is sodB [H]

Identifier: 91788805

GI number: 91788805

Start: 3107247

End: 3107828

Strand: Reverse

Name: sodB [H]

Synonym: Bpro_2945

Alternate gene names: 91788805

Gene position: 3107828-3107247 (Counterclockwise)

Preceding gene: 91788806

Following gene: 91788802

Centisome position: 59.76

GC content: 57.39

Gene sequence:

>582_bases
ATGGAACACAAGCTCCCCCCACTCCCCTACGCGATCGACGCTCTTGCGCCGCATTACAGCCAGGAAGCCTTCGAGTACCA
CCACGGCAAGCACCACAACGCTTATGTCGTGAACCTCAACAACCTGCAAAAAGGTACCGAGTTTGAAGCCATGACGCTGG
AAGAGATCATCAAAAAATCCAGCGGTGGCATCTACAACAACGCCGCTCAAATCTGGAACCACACCTTTTTCTGGAATTGC
ATGAAGCCTGCGGGCGGCGGCGAGCCCAGCGGCGCACTGGCAGCGGCCATCAACGCCAAATTCGGTTCTTACGCGGCGTT
CAAGGAAGCCTTTGTCAAATCGGCCGTCGGCAATTTCGGTTCCGGCTGGACCTGGCTGGTCAGGAAGGCCGATGGCTCTG
TGGATATCGTCAATACCGGCCCTGCAGGCACGCCGCTGACCACCGCCGACAAGGCATTGCTGACGGTGGACGTGTGGGAG
CACGCCTACTACATCGACTACCGCAACCTGCGTCCCAAGTTTGTTGAAACCTTCCTGTCCAACATGGTGAACTGGGGCTT
TGCCGAAGCCAACTTCGCCTGA

Upstream 100 bases:

>100_bases
ACCCTCGCGGACGGGGAGGTCGATTTGACCGTCTCTGCACCCCGCCTCATTTAGTTTTTACAATGGCCCGGACAAGTTTT
TAACCACCACGAGGAAAATC

Downstream 100 bases:

>100_bases
CGCCTGACGCCTGACAGGTGACCCCTGCAGGCATTTGCGCCTTGCATGAAAAAGCCGACTTCGCGTCGGCTTTTTTCATG
GGGTTGACCTATGGCAGGAC

Product: superoxide dismutase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 193; Mature: 193

Protein sequence:

>193_residues
MEHKLPPLPYAIDALAPHYSQEAFEYHHGKHHNAYVVNLNNLQKGTEFEAMTLEEIIKKSSGGIYNNAAQIWNHTFFWNC
MKPAGGGEPSGALAAAINAKFGSYAAFKEAFVKSAVGNFGSGWTWLVRKADGSVDIVNTGPAGTPLTTADKALLTVDVWE
HAYYIDYRNLRPKFVETFLSNMVNWGFAEANFA

Sequences:

>Translated_193_residues
MEHKLPPLPYAIDALAPHYSQEAFEYHHGKHHNAYVVNLNNLQKGTEFEAMTLEEIIKKSSGGIYNNAAQIWNHTFFWNC
MKPAGGGEPSGALAAAINAKFGSYAAFKEAFVKSAVGNFGSGWTWLVRKADGSVDIVNTGPAGTPLTTADKALLTVDVWE
HAYYIDYRNLRPKFVETFLSNMVNWGFAEANFA
>Mature_193_residues
MEHKLPPLPYAIDALAPHYSQEAFEYHHGKHHNAYVVNLNNLQKGTEFEAMTLEEIIKKSSGGIYNNAAQIWNHTFFWNC
MKPAGGGEPSGALAAAINAKFGSYAAFKEAFVKSAVGNFGSGWTWLVRKADGSVDIVNTGPAGTPLTTADKALLTVDVWE
HAYYIDYRNLRPKFVETFLSNMVNWGFAEANFA

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI67782307, Length=196, Percent_Identity=41.3265306122449, Blast_Score=137, Evalue=4e-33,
Organism=Homo sapiens, GI67782305, Length=196, Percent_Identity=41.3265306122449, Blast_Score=137, Evalue=4e-33,
Organism=Homo sapiens, GI67782309, Length=187, Percent_Identity=35.2941176470588, Blast_Score=100, Evalue=1e-21,
Organism=Escherichia coli, GI1787946, Length=193, Percent_Identity=63.2124352331606, Blast_Score=259, Evalue=1e-70,
Organism=Escherichia coli, GI1790342, Length=207, Percent_Identity=41.0628019323672, Blast_Score=142, Evalue=1e-35,
Organism=Caenorhabditis elegans, GI17506561, Length=202, Percent_Identity=37.6237623762376, Blast_Score=120, Evalue=6e-28,
Organism=Caenorhabditis elegans, GI17569479, Length=200, Percent_Identity=34, Blast_Score=106, Evalue=6e-24,
Organism=Saccharomyces cerevisiae, GI6321796, Length=208, Percent_Identity=32.6923076923077, Blast_Score=92, Evalue=8e-20,
Organism=Drosophila melanogaster, GI17136812, Length=197, Percent_Identity=36.5482233502538, Blast_Score=112, Evalue=1e-25,

Paralogues:

None

Copy number: 2020 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 900 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001189
- InterPro:   IPR019833
- InterPro:   IPR019832
- InterPro:   IPR019831 [H]

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 21334; Mature: 21334

Theoretical pI: Translated: 6.72; Mature: 6.72

Prosite motif: PS00088 SOD_MN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEHKLPPLPYAIDALAPHYSQEAFEYHHGKHHNAYVVNLNNLQKGTEFEAMTLEEIIKKS
CCCCCCCCCCHHHHHCCCCCHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHC
SGGIYNNAAQIWNHTFFWNCMKPAGGGEPSGALAAAINAKFGSYAAFKEAFVKSAVGNFG
CCCCCCCHHHHHCCEEEEEEECCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCC
SGWTWLVRKADGSVDIVNTGPAGTPLTTADKALLTVDVWEHAYYIDYRNLRPKFVETFLS
CCEEEEEEECCCCEEEEECCCCCCCCCCCCCEEEEEEECCCEEEEECCCCCHHHHHHHHH
NMVNWGFAEANFA
HHHHCCCCCCCCC
>Mature Secondary Structure
MEHKLPPLPYAIDALAPHYSQEAFEYHHGKHHNAYVVNLNNLQKGTEFEAMTLEEIIKKS
CCCCCCCCCCHHHHHCCCCCHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHC
SGGIYNNAAQIWNHTFFWNCMKPAGGGEPSGALAAAINAKFGSYAAFKEAFVKSAVGNFG
CCCCCCCHHHHHCCEEEEEEECCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCC
SGWTWLVRKADGSVDIVNTGPAGTPLTTADKALLTVDVWEHAYYIDYRNLRPKFVETFLS
CCEEEEEEECCCCEEEEECCCCCCCCCCCCCEEEEEEECCCEEEEECCCCCHHHHHHHHH
NMVNWGFAEANFA
HHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8181762; 12910271 [H]