Definition | Polaromonas sp. JS666 chromosome, complete genome. |
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Accession | NC_007948 |
Length | 5,200,264 |
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The map label for this gene is yhhW [C]
Identifier: 91788757
GI number: 91788757
Start: 3058663
End: 3059547
Strand: Reverse
Name: yhhW [C]
Synonym: Bpro_2897
Alternate gene names: 91788757
Gene position: 3059547-3058663 (Counterclockwise)
Preceding gene: 91788758
Following gene: 91788756
Centisome position: 58.83
GC content: 62.94
Gene sequence:
>885_bases ATGAGCGTGCAACTCAAGCTGACCGGGCACAACAAGGATCTGGGCGGAGGCTTCGTGGTGCGGCGCCTGTTGCCTGCGGT GCAGAGGCAGTCTGTGGGGCCTTTCATCTTTTTTGATCACTTCGGCCCGGTCACGGTGCAGCCGGGCGCCAGCCATGATG TGCGGCCGCATCCGCATATCGGGTTGGCCACGGTCACTTACCTGTTTGAAGGCGCGATGATGCATCGCGACAGCGTGGGC TCTGTCCAGCGCATCGAGCCTGGCGCGATCAACTGGATGACGGCCGGGCGCGGCATCGTGCACTCCGAGCGCGCGCCCGA GGATCTGCGGAACAAGGCTTATGTGAACCATGGCCTGCAGCTGTGGGCTGCCTTGCCGCAGGCTTATGAAGAAGCGGCCC CCTGCTTTTCACACACTCCCGCGTCGGCCATTCCCGCGGTGTCGGTGGGCGGAGCCGACGTGCGCGTGCTGATTGGCGAG GCGTTTGGCGCAACATCGCCGGTCAAGACATTCTCCAAAACGATTTACCTGGATATCCAACTCGCGGCAAATGCGGCGCT GCAATTGCCGGCGCTGGCCGAGGAGCTTGCGCTTTATGCCGTGGAGGGGGATGTGACAGTGGACGGCGAGCCGGTTGTGG CTGGCACCCTGGCCACTTTGGCGGCTGGTACTGTCGTGACCATCGGTAGCAGCGCGCCGGCGCGGCTGGTGGTGATAGGC GGTGAGCCGCTCGATGCCCCCCGGTTTATCTGGTGGAACTTTGTGTCCAGCCAGAAGGCGCGCATTGTGCAAGCCAGTGA TGACTGGGAGGCTCAAGCCATGGGTCATGTGGGCGGGGAAACCGAATTCATTCCCCTGCCTGAACGAAAGTTCGCCGTCA GTTAG
Upstream 100 bases:
>100_bases CCCAGCTGGAGGAGTTGCAGGCGGTTGCGCAAAAATGCCCCGTCCACAAACTGATGACCACCGTTACCACTGAAATCACA ACCAATGTGGAGAGGCTGTC
Downstream 100 bases:
>100_bases GAACTGCCTTTTCGCGTCGATTTTTTGGAAGTATCTTGCACGTAAGATGGTGCGATGAAAATCTTCGCGCTGCTTCCCTG GAGTGACTGGCTGGCCATCG
Product: Pirin-like protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 294; Mature: 293
Protein sequence:
>294_residues MSVQLKLTGHNKDLGGGFVVRRLLPAVQRQSVGPFIFFDHFGPVTVQPGASHDVRPHPHIGLATVTYLFEGAMMHRDSVG SVQRIEPGAINWMTAGRGIVHSERAPEDLRNKAYVNHGLQLWAALPQAYEEAAPCFSHTPASAIPAVSVGGADVRVLIGE AFGATSPVKTFSKTIYLDIQLAANAALQLPALAEELALYAVEGDVTVDGEPVVAGTLATLAAGTVVTIGSSAPARLVVIG GEPLDAPRFIWWNFVSSQKARIVQASDDWEAQAMGHVGGETEFIPLPERKFAVS
Sequences:
>Translated_294_residues MSVQLKLTGHNKDLGGGFVVRRLLPAVQRQSVGPFIFFDHFGPVTVQPGASHDVRPHPHIGLATVTYLFEGAMMHRDSVG SVQRIEPGAINWMTAGRGIVHSERAPEDLRNKAYVNHGLQLWAALPQAYEEAAPCFSHTPASAIPAVSVGGADVRVLIGE AFGATSPVKTFSKTIYLDIQLAANAALQLPALAEELALYAVEGDVTVDGEPVVAGTLATLAAGTVVTIGSSAPARLVVIG GEPLDAPRFIWWNFVSSQKARIVQASDDWEAQAMGHVGGETEFIPLPERKFAVS >Mature_293_residues SVQLKLTGHNKDLGGGFVVRRLLPAVQRQSVGPFIFFDHFGPVTVQPGASHDVRPHPHIGLATVTYLFEGAMMHRDSVGS VQRIEPGAINWMTAGRGIVHSERAPEDLRNKAYVNHGLQLWAALPQAYEEAAPCFSHTPASAIPAVSVGGADVRVLIGEA FGATSPVKTFSKTIYLDIQLAANAALQLPALAEELALYAVEGDVTVDGEPVVAGTLATLAAGTVVTIGSSAPARLVVIGG EPLDAPRFIWWNFVSSQKARIVQASDDWEAQAMGHVGGETEFIPLPERKFAVS
Specific function: Unknown
COG id: COG1741
COG function: function code R; Pirin-related protein
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the pirin family [H]
Homologues:
Organism=Homo sapiens, GI66363697, Length=282, Percent_Identity=32.9787234042553, Blast_Score=128, Evalue=7e-30, Organism=Homo sapiens, GI4505823, Length=282, Percent_Identity=32.9787234042553, Blast_Score=128, Evalue=7e-30,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011051 - InterPro: IPR012093 - InterPro: IPR008778 - InterPro: IPR003829 - InterPro: IPR014710 [H]
Pfam domain/function: PF02678 Pirin; PF05726 Pirin_C [H]
EC number: NA
Molecular weight: Translated: 31244; Mature: 31113
Theoretical pI: Translated: 6.17; Mature: 6.17
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSVQLKLTGHNKDLGGGFVVRRLLPAVQRQSVGPFIFFDHFGPVTVQPGASHDVRPHPHI CEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCEEECCCCCCCCCCCCCC GLATVTYLFEGAMMHRDSVGSVQRIEPGAINWMTAGRGIVHSERAPEDLRNKAYVNHGLQ HHHHHHHHHHHHHHCCCCCCCEEECCCCCEEEEECCCCEEECCCCCHHHHHHHHHHHHHH LWAALPQAYEEAAPCFSHTPASAIPAVSVGGADVRVLIGEAFGATSPVKTFSKTIYLDIQ HHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCEEEEEEECCCCCCCCHHHCCEEEEEEEE LAANAALQLPALAEELALYAVEGDVTVDGEPVVAGTLATLAAGTVVTIGSSAPARLVVIG EECCCEEECHHHHHHHEEEEECCCEEECCCCEEHHHHHHHHCCEEEEECCCCCEEEEEEC GEPLDAPRFIWWNFVSSQKARIVQASDDWEAQAMGHVGGETEFIPLPERKFAVS CCCCCCCCEEEEEECCCCCEEEEECCCCCCHHHHCCCCCCCEEEECCCCCCCCC >Mature Secondary Structure SVQLKLTGHNKDLGGGFVVRRLLPAVQRQSVGPFIFFDHFGPVTVQPGASHDVRPHPHI EEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCEEECCCCCCCCCCCCCC GLATVTYLFEGAMMHRDSVGSVQRIEPGAINWMTAGRGIVHSERAPEDLRNKAYVNHGLQ HHHHHHHHHHHHHHCCCCCCCEEECCCCCEEEEECCCCEEECCCCCHHHHHHHHHHHHHH LWAALPQAYEEAAPCFSHTPASAIPAVSVGGADVRVLIGEAFGATSPVKTFSKTIYLDIQ HHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCEEEEEEECCCCCCCCHHHCCEEEEEEEE LAANAALQLPALAEELALYAVEGDVTVDGEPVVAGTLATLAAGTVVTIGSSAPARLVVIG EECCCEEECHHHHHHHEEEEECCCEEECCCCEEHHHHHHHHCCEEEEECCCCCEEEEEEC GEPLDAPRFIWWNFVSSQKARIVQASDDWEAQAMGHVGGETEFIPLPERKFAVS CCCCCCCCEEEEEECCCCCEEEEECCCCCCHHHHCCCCCCCEEEECCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11259647 [H]