Definition | Polaromonas sp. JS666 chromosome, complete genome. |
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Accession | NC_007948 |
Length | 5,200,264 |
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The map label for this gene is lysC [H]
Identifier: 91788721
GI number: 91788721
Start: 3015272
End: 3016540
Strand: Reverse
Name: lysC [H]
Synonym: Bpro_2860
Alternate gene names: 91788721
Gene position: 3016540-3015272 (Counterclockwise)
Preceding gene: 91788722
Following gene: 91788718
Centisome position: 58.01
GC content: 61.07
Gene sequence:
>1269_bases ATGGCTTTGATCGTTCATAAATACGGCGGCACATCGATGGGCTCAACCGAGCGCATCCGCAATGTGGCCAAGCGCGTCGC CAAGTGGGCGCGGGCCGGCCACCAGATGGTCGTGGTTCCCAGCGCTATGAGTGGCGAAACCAATCGTTTGCTGGGCCTGG CCAAAGAGCTGGCCCCCGCACGGCCCGGTGACGACTATCATCGTGAACTCGACGCGCTGGCCGCGACCGGCGAGCAGGCC TCCAGCGCGCTGCTGGCCATTGCCCTGCAGTCCGAAGGCATGCAGGCCGTGAGCTACGCCGGCTGGCAGGTCACCATCAA GACCAACAACGCCTACACCAAGGCCCGCATCGAGTCGATTGACGACGAGCGCGTGCGCGCCGACCTGGACGCCGGCAAGG TCGTCATCATCACCGGCTTCCAGGGTGTGGACGAGGGCGGCAACGTCACCACGCTGGGCCGCGGCGGCTCCGACACCTCT GCCGTGGCGATCGCGGCAGCCCTGAAAGCCCACGAGTGCCTGATTTACACCGACGTGGACGGCGTGTACACGACCGACCC GCGCGTGGTGCCCGAGGCACGCCGCCTGCATACCGTGAGTTTCGAGGAAATGCTGGAGATGGCCTCCATGGGCTCCAAGG TGCTGCAGATCCGCTCGGTGGAATTTGCCGGCAAGTACAAGGTGCCGCTGCGCGTGCTGTCCAGCTTCACCGACTGGGAC ATCGACATCAACGAAGAAGCCAGATCAGGCACTTTGATCAGTTTTGAGGAAGACGAAAACATGGAACAAGCCATCGTATC GGGCATCGCTTTCAACCGCGATGAAGCCAAAATCTCCGTCCTCGGCGTGCCAGACACTCCGGGCATTGCCTACCAGATCC TCGGCGCCGTGGCTGACGCCAACATCGAAGTCGATGTGATCATCCAGAATATCAGCAAGGACGGCAAGACCGACTTCAGC TTTACCGTGCACCGCAACGACTATTCCAAAGCCGTTGACCTGCTGAAAACCCAGGTGCTGCCCAAACTCGGCGCGCAGGA AGTCACCGGCGACGCCAAGATCTGCAAGGTCAGCATCGTAGGCATCGGCATGCGCAGCCATGTGGGTGTTGCCAGCAAGA TGTTCCGCGTGCTCAGCGAAGAGGGCATCAACATCCAGATGATTTCCACCAGCGAAATCAAGACCTCCGTGGTCATTGAT GAAAAATACATGGAGCTGGCCGTTCGTGCCTTGCACAAGGCTTTTGACCTGGACCAGCCCGCCGCCTGA
Upstream 100 bases:
>100_bases GGCAGCCAAAGCCTTCCCTGCAGAATGCAGAAAGGGCATGAGAGGCCTGCAAAAAGCAGCACGCAATGTTCGCAACCAAC TCCTGAATTGACATCCTGCA
Downstream 100 bases:
>100_bases AAACCGGCTTTAAGTCGTGAGATAATCGCTTTATTGGAAACGTGACCGAGTGGCCGAAGGTGCTCCCCTGCTAAGGGAGT ATGGGGTGTAGAGCCTCATC
Product: aspartate kinase
Products: NA
Alternate protein names: Aspartate kinase [H]
Number of amino acids: Translated: 422; Mature: 421
Protein sequence:
>422_residues MALIVHKYGGTSMGSTERIRNVAKRVAKWARAGHQMVVVPSAMSGETNRLLGLAKELAPARPGDDYHRELDALAATGEQA SSALLAIALQSEGMQAVSYAGWQVTIKTNNAYTKARIESIDDERVRADLDAGKVVIITGFQGVDEGGNVTTLGRGGSDTS AVAIAAALKAHECLIYTDVDGVYTTDPRVVPEARRLHTVSFEEMLEMASMGSKVLQIRSVEFAGKYKVPLRVLSSFTDWD IDINEEARSGTLISFEEDENMEQAIVSGIAFNRDEAKISVLGVPDTPGIAYQILGAVADANIEVDVIIQNISKDGKTDFS FTVHRNDYSKAVDLLKTQVLPKLGAQEVTGDAKICKVSIVGIGMRSHVGVASKMFRVLSEEGINIQMISTSEIKTSVVID EKYMELAVRALHKAFDLDQPAA
Sequences:
>Translated_422_residues MALIVHKYGGTSMGSTERIRNVAKRVAKWARAGHQMVVVPSAMSGETNRLLGLAKELAPARPGDDYHRELDALAATGEQA SSALLAIALQSEGMQAVSYAGWQVTIKTNNAYTKARIESIDDERVRADLDAGKVVIITGFQGVDEGGNVTTLGRGGSDTS AVAIAAALKAHECLIYTDVDGVYTTDPRVVPEARRLHTVSFEEMLEMASMGSKVLQIRSVEFAGKYKVPLRVLSSFTDWD IDINEEARSGTLISFEEDENMEQAIVSGIAFNRDEAKISVLGVPDTPGIAYQILGAVADANIEVDVIIQNISKDGKTDFS FTVHRNDYSKAVDLLKTQVLPKLGAQEVTGDAKICKVSIVGIGMRSHVGVASKMFRVLSEEGINIQMISTSEIKTSVVID EKYMELAVRALHKAFDLDQPAA >Mature_421_residues ALIVHKYGGTSMGSTERIRNVAKRVAKWARAGHQMVVVPSAMSGETNRLLGLAKELAPARPGDDYHRELDALAATGEQAS SALLAIALQSEGMQAVSYAGWQVTIKTNNAYTKARIESIDDERVRADLDAGKVVIITGFQGVDEGGNVTTLGRGGSDTSA VAIAAALKAHECLIYTDVDGVYTTDPRVVPEARRLHTVSFEEMLEMASMGSKVLQIRSVEFAGKYKVPLRVLSSFTDWDI DINEEARSGTLISFEEDENMEQAIVSGIAFNRDEAKISVLGVPDTPGIAYQILGAVADANIEVDVIIQNISKDGKTDFSF TVHRNDYSKAVDLLKTQVLPKLGAQEVTGDAKICKVSIVGIGMRSHVGVASKMFRVLSEEGINIQMISTSEIKTSVVIDE KYMELAVRALHKAFDLDQPAA
Specific function: Catalyzes 2 nonconsecutive reactions in the common biosynthetic pathway leading from Asp to diaminopimelate and Lys, to Met, and to Thr and Ile. [C]
COG id: COG0527
COG function: function code E; Aspartokinases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 ACT domains [H]
Homologues:
Organism=Escherichia coli, GI1786183, Length=477, Percent_Identity=28.7211740041929, Blast_Score=149, Evalue=2e-37, Organism=Escherichia coli, GI1790455, Length=439, Percent_Identity=28.246013667426, Blast_Score=104, Evalue=1e-23, Organism=Escherichia coli, GI1790376, Length=280, Percent_Identity=25.7142857142857, Blast_Score=75, Evalue=1e-14, Organism=Saccharomyces cerevisiae, GI6320893, Length=393, Percent_Identity=27.2264631043257, Blast_Score=110, Evalue=4e-25,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002912 - InterPro: IPR001048 - InterPro: IPR005260 - InterPro: IPR001341 - InterPro: IPR018042 [H]
Pfam domain/function: PF00696 AA_kinase; PF01842 ACT [H]
EC number: =2.7.2.4 [H]
Molecular weight: Translated: 45562; Mature: 45431
Theoretical pI: Translated: 5.10; Mature: 5.10
Prosite motif: PS00324 ASPARTOKINASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MALIVHKYGGTSMGSTERIRNVAKRVAKWARAGHQMVVVPSAMSGETNRLLGLAKELAPA CEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHCCC RPGDDYHRELDALAATGEQASSALLAIALQSEGMQAVSYAGWQVTIKTNNAYTKARIESI CCCCHHHHHHHHHHHCCCHHCCEEEEEEECCCCCCEEEECCEEEEEEECCCEEEHHHHCC DDERVRADLDAGKVVIITGFQGVDEGGNVTTLGRGGSDTSAVAIAAALKAHECLIYTDVD CCHHHEEECCCCCEEEEECCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHCEEEEEEECC GVYTTDPRVVPEARRLHTVSFEEMLEMASMGSKVLQIRSVEFAGKYKVPLRVLSSFTDWD CEEECCCCCCCCHHHEEEECHHHHHHHHHCCCCEEEEEEEEECCCCCCHHHHHCCCCCCC IDINEEARSGTLISFEEDENMEQAIVSGIAFNRDEAKISVLGVPDTPGIAYQILGAVADA EEECCCCCCCCEEEECCCCCHHHHHHHHHEECCCCCEEEEEECCCCCCHHHHHHHHHHCC NIEVDVIIQNISKDGKTDFSFTVHRNDYSKAVDLLKTQVLPKLGAQEVTGDAKICKVSIV CCEEEEEEEECCCCCCCCEEEEEECCCHHHHHHHHHHHHHHCCCCHHCCCCCEEEEEEEE GIGMRSHVGVASKMFRVLSEEGINIQMISTSEIKTSVVIDEKYMELAVRALHKAFDLDQP EECHHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEEECHHHHHHHHHHHHHHHCCCCC AA CC >Mature Secondary Structure ALIVHKYGGTSMGSTERIRNVAKRVAKWARAGHQMVVVPSAMSGETNRLLGLAKELAPA EEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHCCC RPGDDYHRELDALAATGEQASSALLAIALQSEGMQAVSYAGWQVTIKTNNAYTKARIESI CCCCHHHHHHHHHHHCCCHHCCEEEEEEECCCCCCEEEECCEEEEEEECCCEEEHHHHCC DDERVRADLDAGKVVIITGFQGVDEGGNVTTLGRGGSDTSAVAIAAALKAHECLIYTDVD CCHHHEEECCCCCEEEEECCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHCEEEEEEECC GVYTTDPRVVPEARRLHTVSFEEMLEMASMGSKVLQIRSVEFAGKYKVPLRVLSSFTDWD CEEECCCCCCCCHHHEEEECHHHHHHHHHCCCCEEEEEEEEECCCCCCHHHHHCCCCCCC IDINEEARSGTLISFEEDENMEQAIVSGIAFNRDEAKISVLGVPDTPGIAYQILGAVADA EEECCCCCCCCEEEECCCCCHHHHHHHHHEECCCCCEEEEEECCCCCCHHHHHHHHHHCC NIEVDVIIQNISKDGKTDFSFTVHRNDYSKAVDLLKTQVLPKLGAQEVTGDAKICKVSIV CCEEEEEEEECCCCCCCCEEEEEECCCHHHHHHHHHHHHHHCCCCHHCCCCCEEEEEEEE GIGMRSHVGVASKMFRVLSEEGINIQMISTSEIKTSVVIDEKYMELAVRALHKAFDLDQP EECHHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEEECHHHHHHHHHHHHHHHCCCCC AA CC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10984043 [H]