Definition | Polaromonas sp. JS666 chromosome, complete genome. |
---|---|
Accession | NC_007948 |
Length | 5,200,264 |
Click here to switch to the map view.
The map label for this gene is qacA [H]
Identifier: 91787264
GI number: 91787264
Start: 1408245
End: 1409774
Strand: Direct
Name: qacA [H]
Synonym: Bpro_1369
Alternate gene names: 91787264
Gene position: 1408245-1409774 (Clockwise)
Preceding gene: 91787263
Following gene: 91787269
Centisome position: 27.08
GC content: 66.47
Gene sequence:
>1530_bases ATGAGTGATACCGCCGGGACACCCAGGGCCACACGGCGCGAGTGGATTGGGCTTGCCGTCATTGCGCTGCCGTGCCTGCT GTACTCCATGGACCTGACGGTCATGAACCTCGCGGTGCCGCACATCAGCGCAGATCTCAAGCCCACGGGCGCGCAACTGC TGTGGATGGTGGACATCTACGGCTTCATGATTGCCGGCTCGCTGATCACCATGGGCACGCTGGGCGACCGCATTGGCCGG CGCCGGCTGCTGCTGATGGGGGCTGCCGCGTTTGGCATTGCCTCGGTGCTGGCGGCGCTCTCGACCACTGCCGGGATGCT GATCGCCACGCGCGCGCTGCTCGGCCTTGCCGGGGCGACGCTGGCGCCTTCCACGCTTTCGCTGATCCGCAACATGTTTC CCAATCCGGAGCAGCGCACGGTCGCCATCGGCGTGTGGATCACTAGTTATTCGACCGGCGGTGCGATAGGCCCCCTGGTC GGCGGCCTGCTGCTGGAGCATTTTTGGTGGGGTTCAGTGTTCCTCGTCAGCGTGCCGGTGATGGTGTTGCTGCTGGTGCT GGGCCCCGCGCTGCTGCCCGAATACCGCGATGCCGACGCGGGGCCGCTTGACCTGCCGAGTGCTGTGCAGTCGCTCGCTG CCGTGCTGGCTGTGATCTACGGCCTCAAGCGCATCGCCGAGGACGGTGTGGGTTGGCTGCCCGCCGTGTGTATCCTGGCG GGGCTGGCCATTGGCGCGGCGTTCTTGCGCAGACAGCGCACGCTGACCAGCCCGCTGATCGACCTGGCGCTGTTCCGCGC GCCGGCTTTCAGTGCGGCCCTGGTCATCAACACCCTCTCTTTCTTCGGCGCGTTCGGGGCTTTTCTTTTTATCGCGCAGT ATTTGCAACTGGTGATCGGGCTTTCGCCCCTGCAGGCGGGCCTGTGGTCGGTGCCTTCGGCGCTTGGTTTCATCGTCGGT TCCATGCTGGTGCCGCTGATCGTGCGACACATCTCTTCGGGCCTGGCGGTCGTGGCTGCCCTGGCGCTTTCGGTCGTCGG CTTCGGTGTGCTCACGCAGGTGGGCGGCGCCTCCGGGCTGACCATCCTGGTGACCGGTTCGGTTATCTTTTCGCTTGGTC TGGCGCCGGTGGTTACGCTGGGCACCGACCTGATTGTCGGCTCTGCGCCGCCCGGGCGCGCCGGCGCAGCAGCGGCGATT TCAGAGACCAGTTCCGAATTTGGCGGTGCACTGGGCATCGCAGTGCTGGGCAGCGTCGTAACGGCCGTGTACAGCCATGC CATGGCCGATACCGTTCTCAGCGGTGTACCACCCGCCGCCATGCAGACGGTGCGTAGCACGCTGGGCGGCGCCGTGGCCG TGGCCGCGGAGTTGCCCGGCACCAGCGGCGCAGCGCTGCTCGATACCTCGCGTGACGCGTTTGCCCAGGCATTTCAGGTA ACGGCCACGATCAGCGCGGCCCTGCTGCTGGCAACTACCATTCTGGCTGCCGTCATGCTGCGGCAGACGCGCACCAGTGC AGTGGGCTAA
Upstream 100 bases:
>100_bases CGTGGGTGCGCCACCACGACAAATATGACAACTATGAAGGGGCGCCCAAGCCGGCCGCGCAGGCTGCCCCAGCCTGCTGC CATGCGGACGCCAGCGCCGC
Downstream 100 bases:
>100_bases CGCCAATACGGTTCAGTCAAGCCCTTGCCCCTGGTTTGTCATCCGGACTTGATCCGGGATCCATGGATGGCGGGCCAAGC CCGCCATGACAAGCCAAGGT
Product: major facilitator transporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 509; Mature: 508
Protein sequence:
>509_residues MSDTAGTPRATRREWIGLAVIALPCLLYSMDLTVMNLAVPHISADLKPTGAQLLWMVDIYGFMIAGSLITMGTLGDRIGR RRLLLMGAAAFGIASVLAALSTTAGMLIATRALLGLAGATLAPSTLSLIRNMFPNPEQRTVAIGVWITSYSTGGAIGPLV GGLLLEHFWWGSVFLVSVPVMVLLLVLGPALLPEYRDADAGPLDLPSAVQSLAAVLAVIYGLKRIAEDGVGWLPAVCILA GLAIGAAFLRRQRTLTSPLIDLALFRAPAFSAALVINTLSFFGAFGAFLFIAQYLQLVIGLSPLQAGLWSVPSALGFIVG SMLVPLIVRHISSGLAVVAALALSVVGFGVLTQVGGASGLTILVTGSVIFSLGLAPVVTLGTDLIVGSAPPGRAGAAAAI SETSSEFGGALGIAVLGSVVTAVYSHAMADTVLSGVPPAAMQTVRSTLGGAVAVAAELPGTSGAALLDTSRDAFAQAFQV TATISAALLLATTILAAVMLRQTRTSAVG
Sequences:
>Translated_509_residues MSDTAGTPRATRREWIGLAVIALPCLLYSMDLTVMNLAVPHISADLKPTGAQLLWMVDIYGFMIAGSLITMGTLGDRIGR RRLLLMGAAAFGIASVLAALSTTAGMLIATRALLGLAGATLAPSTLSLIRNMFPNPEQRTVAIGVWITSYSTGGAIGPLV GGLLLEHFWWGSVFLVSVPVMVLLLVLGPALLPEYRDADAGPLDLPSAVQSLAAVLAVIYGLKRIAEDGVGWLPAVCILA GLAIGAAFLRRQRTLTSPLIDLALFRAPAFSAALVINTLSFFGAFGAFLFIAQYLQLVIGLSPLQAGLWSVPSALGFIVG SMLVPLIVRHISSGLAVVAALALSVVGFGVLTQVGGASGLTILVTGSVIFSLGLAPVVTLGTDLIVGSAPPGRAGAAAAI SETSSEFGGALGIAVLGSVVTAVYSHAMADTVLSGVPPAAMQTVRSTLGGAVAVAAELPGTSGAALLDTSRDAFAQAFQV TATISAALLLATTILAAVMLRQTRTSAVG >Mature_508_residues SDTAGTPRATRREWIGLAVIALPCLLYSMDLTVMNLAVPHISADLKPTGAQLLWMVDIYGFMIAGSLITMGTLGDRIGRR RLLLMGAAAFGIASVLAALSTTAGMLIATRALLGLAGATLAPSTLSLIRNMFPNPEQRTVAIGVWITSYSTGGAIGPLVG GLLLEHFWWGSVFLVSVPVMVLLLVLGPALLPEYRDADAGPLDLPSAVQSLAAVLAVIYGLKRIAEDGVGWLPAVCILAG LAIGAAFLRRQRTLTSPLIDLALFRAPAFSAALVINTLSFFGAFGAFLFIAQYLQLVIGLSPLQAGLWSVPSALGFIVGS MLVPLIVRHISSGLAVVAALALSVVGFGVLTQVGGASGLTILVTGSVIFSLGLAPVVTLGTDLIVGSAPPGRAGAAAAIS ETSSEFGGALGIAVLGSVVTAVYSHAMADTVLSGVPPAAMQTVRSTLGGAVAVAAELPGTSGAALLDTSRDAFAQAFQVT ATISAALLLATTILAAVMLRQTRTSAVG
Specific function: Confers export-mediated resistance against antiseptic and disinfectant compounds such as intercalating dyes, quaternary ammonium salts and diamidines [H]
COG id: COG0477
COG function: function code GEPR; Permeases of the major facilitator superfamily
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the major facilitator superfamily [H]
Homologues:
Organism=Escherichia coli, GI87081983, Length=392, Percent_Identity=30.3571428571429, Blast_Score=130, Evalue=2e-31, Organism=Escherichia coli, GI1789042, Length=446, Percent_Identity=26.9058295964126, Blast_Score=112, Evalue=7e-26, Organism=Escherichia coli, GI1788710, Length=322, Percent_Identity=27.639751552795, Blast_Score=108, Evalue=6e-25, Organism=Escherichia coli, GI1790195, Length=334, Percent_Identity=25.4491017964072, Blast_Score=84, Evalue=3e-17, Organism=Escherichia coli, GI1788392, Length=346, Percent_Identity=28.9017341040462, Blast_Score=69, Evalue=6e-13, Organism=Escherichia coli, GI1790146, Length=181, Percent_Identity=27.6243093922652, Blast_Score=64, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020846 - InterPro: IPR011701 - InterPro: IPR016196 - InterPro: IPR005829 [H]
Pfam domain/function: PF07690 MFS_1 [H]
EC number: NA
Molecular weight: Translated: 51790; Mature: 51659
Theoretical pI: Translated: 8.68; Mature: 8.68
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDTAGTPRATRREWIGLAVIALPCLLYSMDLTVMNLAVPHISADLKPTGAQLLWMVDIY CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH GFMIAGSLITMGTLGDRIGRRRLLLMGAAAFGIASVLAALSTTAGMLIATRALLGLAGAT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC LAPSTLSLIRNMFPNPEQRTVAIGVWITSYSTGGAIGPLVGGLLLEHFWWGSVFLVSVPV CCHHHHHHHHHHCCCCCCCEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH MVLLLVLGPALLPEYRDADAGPLDLPSAVQSLAAVLAVIYGLKRIAEDGVGWLPAVCILA HHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH GLAIGAAFLRRQRTLTSPLIDLALFRAPAFSAALVINTLSFFGAFGAFLFIAQYLQLVIG HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC LSPLQAGLWSVPSALGFIVGSMLVPLIVRHISSGLAVVAALALSVVGFGVLTQVGGASGL CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC TILVTGSVIFSLGLAPVVTLGTDLIVGSAPPGRAGAAAAISETSSEFGGALGIAVLGSVV EEEEEHHHHHHHHHHHHHHHCCHHEECCCCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHH TAVYSHAMADTVLSGVPPAAMQTVRSTLGGAVAVAAELPGTSGAALLDTSRDAFAQAFQV HHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCEEEEEECCCCCCCEEECCCHHHHHHHHHH TATISAALLLATTILAAVMLRQTRTSAVG HHHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure SDTAGTPRATRREWIGLAVIALPCLLYSMDLTVMNLAVPHISADLKPTGAQLLWMVDIY CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH GFMIAGSLITMGTLGDRIGRRRLLLMGAAAFGIASVLAALSTTAGMLIATRALLGLAGAT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC LAPSTLSLIRNMFPNPEQRTVAIGVWITSYSTGGAIGPLVGGLLLEHFWWGSVFLVSVPV CCHHHHHHHHHHCCCCCCCEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH MVLLLVLGPALLPEYRDADAGPLDLPSAVQSLAAVLAVIYGLKRIAEDGVGWLPAVCILA HHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH GLAIGAAFLRRQRTLTSPLIDLALFRAPAFSAALVINTLSFFGAFGAFLFIAQYLQLVIG HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC LSPLQAGLWSVPSALGFIVGSMLVPLIVRHISSGLAVVAALALSVVGFGVLTQVGGASGL CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC TILVTGSVIFSLGLAPVVTLGTDLIVGSAPPGRAGAAAAISETSSEFGGALGIAVLGSVV EEEEEHHHHHHHHHHHHHHHCCHHEECCCCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHH TAVYSHAMADTVLSGVPPAAMQTVRSTLGGAVAVAAELPGTSGAALLDTSRDAFAQAFQV HHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCEEEEEECCCCCCCEEECCCHHHHHHHHHH TATISAALLLATTILAAVMLRQTRTSAVG HHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11418146 [H]