Definition | Polaromonas sp. JS666 chromosome, complete genome. |
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Accession | NC_007948 |
Length | 5,200,264 |
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The map label for this gene is 91787082
Identifier: 91787082
GI number: 91787082
Start: 1224757
End: 1225950
Strand: Direct
Name: 91787082
Synonym: Bpro_1185
Alternate gene names: NA
Gene position: 1224757-1225950 (Clockwise)
Preceding gene: 91787081
Following gene: 91787083
Centisome position: 23.55
GC content: 65.83
Gene sequence:
>1194_bases GTGATCAGCCTGGCCGGCCGCGACATCCTGCACGCTTGGGGAAAGTTCGTTCTCACGGGCTTTGGGTTGGGGTTGCTGAT CGGCGTCACACTGACCTTTGCCGGGGTTTACCGCGGCATGGTGGACGACGCCAAGGTGCTGCTCGCCAACAGCGGTGCCG ACCTGTGGGTGGTACAGAAGGACACGCAGGGGCCCTACGCGGAGTCGTCCAGCCTGCGTGACGACGCCTATCGCAGCGTG CGCGGCCTGCCCGGCGTCGAGCAGGCCGCAAATGTCACTTACCTGACCATGCAGGTGCGCGGCAGCGCCGGTGACGTGCG CGCCATGGTGGTCGGCTTCGAGCCCGGCCAGCCGGGTGAGCCCGGCTACCTGATGGCGGGCCGGCGGATCACCCGCAGCC ACTATGAAGCCGTGGCCGACGTGAAGACCGGCTTCGCGCTCGACGAGCGCATCCGCATCCGCCGCCACGAATACACGGTG GTGGGACTGACCCGGCGCATGGTGTCTTCCGGTGGCGACCCGATGGTGTTCATCCCGCTGAAGGACGCGCAGGAAGCGCA GTTCCTGAAGGACAACGACGCCATCGTCAGCGAGCGCGAGCGCACCGCTGCCAATCCGGCTTTCAACCGCCCCGGTGTGC CCGGTTTGCTGGAGGCCGTCACCGCCTCCCAAGCCAGCAGCCACAACGTCAACGCCGTGCTGGTGCGCATGGCCGATGGC CACTCTCCCGAAGCGCTGGTGCAAACCATCCGGCGCTGGAAACACCTGCAGGCTTACTCGCGCACCGAGATGGAAGAACT GCTGATCGCCAAGCTGATTGCCACCGCCGCCAGGCAGATCGGCATGTTCCTGGTGATCCTGGCGGTGGTCAGCGCGGCCA TCGTCGCCTTCATCATCTACACGATGACGCTGGGCAAGATCCGCGAGATCGCCGTGCTCAAGCTCATCGGCACCCATGAC CGCACCATCGCCAGCATGATCCTGCAACAGGCGCTGGGGCTGGGGGTAATCGGCTTCATCGTTGGCAAGCTGTCCGCCAG CCTGTGGGCGCCACTGTTTCCGAAGTACGTGTTGCTCGAGACGTCGGATGCTGTGCTCGGCTTCTTCCTCGCCATGGTGG TGTGCGCACTGGCCAGCACGCTGGCGATCCGGGTGGCGCTCAAGGTCGATCCGGCTGCGGCGATTGGTGGCTGA
Upstream 100 bases:
>100_bases ATGGCCTGAAGGCCGGCAACGAGGTGGTGGTCTACAGCGGGCGCGAACTGGAGGCCGGCAGTCGAATCAAGGTCGTGCCC TCGCTGGTCGAGGCTGCAAA
Downstream 100 bases:
>100_bases GGTGGCTGCCAGCATACCCGCCACCGTCGGCATCCGGATTGATGGGCTGAGCAAGCGCTATGGCACCGGCACGACCGCCG TTGATGCGCTGAAGGACGTC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 397; Mature: 397
Protein sequence:
>397_residues MISLAGRDILHAWGKFVLTGFGLGLLIGVTLTFAGVYRGMVDDAKVLLANSGADLWVVQKDTQGPYAESSSLRDDAYRSV RGLPGVEQAANVTYLTMQVRGSAGDVRAMVVGFEPGQPGEPGYLMAGRRITRSHYEAVADVKTGFALDERIRIRRHEYTV VGLTRRMVSSGGDPMVFIPLKDAQEAQFLKDNDAIVSERERTAANPAFNRPGVPGLLEAVTASQASSHNVNAVLVRMADG HSPEALVQTIRRWKHLQAYSRTEMEELLIAKLIATAARQIGMFLVILAVVSAAIVAFIIYTMTLGKIREIAVLKLIGTHD RTIASMILQQALGLGVIGFIVGKLSASLWAPLFPKYVLLETSDAVLGFFLAMVVCALASTLAIRVALKVDPAAAIGG
Sequences:
>Translated_397_residues MISLAGRDILHAWGKFVLTGFGLGLLIGVTLTFAGVYRGMVDDAKVLLANSGADLWVVQKDTQGPYAESSSLRDDAYRSV RGLPGVEQAANVTYLTMQVRGSAGDVRAMVVGFEPGQPGEPGYLMAGRRITRSHYEAVADVKTGFALDERIRIRRHEYTV VGLTRRMVSSGGDPMVFIPLKDAQEAQFLKDNDAIVSERERTAANPAFNRPGVPGLLEAVTASQASSHNVNAVLVRMADG HSPEALVQTIRRWKHLQAYSRTEMEELLIAKLIATAARQIGMFLVILAVVSAAIVAFIIYTMTLGKIREIAVLKLIGTHD RTIASMILQQALGLGVIGFIVGKLSASLWAPLFPKYVLLETSDAVLGFFLAMVVCALASTLAIRVALKVDPAAAIGG >Mature_397_residues MISLAGRDILHAWGKFVLTGFGLGLLIGVTLTFAGVYRGMVDDAKVLLANSGADLWVVQKDTQGPYAESSSLRDDAYRSV RGLPGVEQAANVTYLTMQVRGSAGDVRAMVVGFEPGQPGEPGYLMAGRRITRSHYEAVADVKTGFALDERIRIRRHEYTV VGLTRRMVSSGGDPMVFIPLKDAQEAQFLKDNDAIVSERERTAANPAFNRPGVPGLLEAVTASQASSHNVNAVLVRMADG HSPEALVQTIRRWKHLQAYSRTEMEELLIAKLIATAARQIGMFLVILAVVSAAIVAFIIYTMTLGKIREIAVLKLIGTHD RTIASMILQQALGLGVIGFIVGKLSASLWAPLFPKYVLLETSDAVLGFFLAMVVCALASTLAIRVALKVDPAAAIGG
Specific function: Probably part of an ABC transporter complex. Probably responsible for the translocation of the substrate across the membrane [H]
COG id: COG0577
COG function: function code V; ABC-type antimicrobial peptide transport system, permease component
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ABC-4 integral membrane protein family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003838 [H]
Pfam domain/function: PF02687 FtsX [H]
EC number: NA
Molecular weight: Translated: 42689; Mature: 42689
Theoretical pI: Translated: 9.59; Mature: 9.59
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MISLAGRDILHAWGKFVLTGFGLGLLIGVTLTFAGVYRGMVDDAKVLLANSGADLWVVQK CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEEEEE DTQGPYAESSSLRDDAYRSVRGLPGVEQAANVTYLTMQVRGSAGDVRAMVVGFEPGQPGE CCCCCCCCCCCCHHHHHHHHCCCCCCHHHCCEEEEEEEEECCCCCEEEEEEEECCCCCCC PGYLMAGRRITRSHYEAVADVKTGFALDERIRIRRHEYTVVGLTRRMVSSGGDPMVFIPL CCEEECCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHEEEEHHHHHHHHHCCCCCEEEEEC KDAQEAQFLKDNDAIVSERERTAANPAFNRPGVPGLLEAVTASQASSHNVNAVLVRMADG CCCCHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEEECCC HSPEALVQTIRRWKHLQAYSRTEMEELLIAKLIATAARQIGMFLVILAVVSAAIVAFIIY CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TMTLGKIREIAVLKLIGTHDRTIASMILQQALGLGVIGFIVGKLSASLWAPLFPKYVLLE HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEE TSDAVLGFFLAMVVCALASTLAIRVALKVDPAAAIGG CCHHHHHHHHHHHHHHHHHHHHEEEEEEECCHHCCCC >Mature Secondary Structure MISLAGRDILHAWGKFVLTGFGLGLLIGVTLTFAGVYRGMVDDAKVLLANSGADLWVVQK CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEEEEE DTQGPYAESSSLRDDAYRSVRGLPGVEQAANVTYLTMQVRGSAGDVRAMVVGFEPGQPGE CCCCCCCCCCCCHHHHHHHHCCCCCCHHHCCEEEEEEEEECCCCCEEEEEEEECCCCCCC PGYLMAGRRITRSHYEAVADVKTGFALDERIRIRRHEYTVVGLTRRMVSSGGDPMVFIPL CCEEECCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHEEEEHHHHHHHHHCCCCCEEEEEC KDAQEAQFLKDNDAIVSERERTAANPAFNRPGVPGLLEAVTASQASSHNVNAVLVRMADG CCCCHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEEECCC HSPEALVQTIRRWKHLQAYSRTEMEELLIAKLIATAARQIGMFLVILAVVSAAIVAFIIY CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TMTLGKIREIAVLKLIGTHDRTIASMILQQALGLGVIGFIVGKLSASLWAPLFPKYVLLE HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEE TSDAVLGFFLAMVVCALASTLAIRVALKVDPAAAIGG CCHHHHHHHHHHHHHHHHHHHHEEEEEEECCHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]