Definition | Polaromonas sp. JS666 chromosome, complete genome. |
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Accession | NC_007948 |
Length | 5,200,264 |
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The map label for this gene is btr [H]
Identifier: 91787067
GI number: 91787067
Start: 1212534
End: 1213358
Strand: Direct
Name: btr [H]
Synonym: Bpro_1170
Alternate gene names: 91787067
Gene position: 1212534-1213358 (Clockwise)
Preceding gene: 91787066
Following gene: 91787068
Centisome position: 23.32
GC content: 62.79
Gene sequence:
>825_bases ATGTCAACCGCCACACTCATACGCACACAGGAGCGCACACAAGAGCGTACGCAGGAAACACCCGCCAGCGACCTGCGGGT CATTCCGATTCGACAGGCCATGGGGGATGCGCAGGTCGCGCCTTTGGGGACACCCTGCTCCAGCTGCCACCTGTGCGATC TGTGCCTGCCCTGCGGCATGACAGACGGCGACGTGGAGTGCCTGGACAGCCTGACGTTCGGGCGTCGCAAGGTCAAGGCC GGCCAGACGCTCTTTGACGAGGGCGACCACTTTCAATTCATGTATGCCGTGCGCAGCGGCACCTTCAAGTCCAGCCTGAT GCTGGCCGACGGCCGCGAGCAGATCAGTGGCTTCCACATGGCCGGTGAGCTGATTGGCCTGGACGGCGTGGCCTATGGCA AGCATGCCAGCACCGCTACGGCGCTGGAGGATACCGAGGTCTGCGTCATTCCCTATGCGCAACTGACCCGGCTGGCCACC GGCAACGCCAGCATGCAGAACATGGTCAGTCGCCTGATGAGCCGCGAGATCATCCGGGAACACAGCCTGATGCTGTTGCT GGGCAGCATGAACGCCGAGGAACGGCTGGCGGCGTTTCTGCTGAACCTGTCGCAGCGCCTGAAGGCCCGCGGCTACTCGG CCAGCGAATTTCACCTGAGGATGACGCGCGCCGAAATCGGTAGCTACCTGGGCATGAAACTGGAAACCGTCAGCCGCACA TTCTCGGCCTTCCAGCAGCAGGGTTTGCTTGAAGTCGACAAGCGCCACATCCGCATCGTCAACCTGGACGGCCTGACGCG GGTCTTCGAGATGCACCTGCACTGA
Upstream 100 bases:
>100_bases TTCCTCGACAAAAGCACCGAATCCGATCAACTTGCCCAGGCTGTTGCGAGAGCATCGCAACACCCTGCGCATTGACGGCC GTCTCATCAAGGGGAAAATC
Downstream 100 bases:
>100_bases AGGCTGCATCGGTATGAAATACAAGGACTATTACGCCGCGCTGGGTGTGCCACGGGACGCCGACACCGAACAGATCAAGA AGGCCTACCGCAAGCTGGCG
Product: Crp/FNR family transcriptional regulator
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 274; Mature: 273
Protein sequence:
>274_residues MSTATLIRTQERTQERTQETPASDLRVIPIRQAMGDAQVAPLGTPCSSCHLCDLCLPCGMTDGDVECLDSLTFGRRKVKA GQTLFDEGDHFQFMYAVRSGTFKSSLMLADGREQISGFHMAGELIGLDGVAYGKHASTATALEDTEVCVIPYAQLTRLAT GNASMQNMVSRLMSREIIREHSLMLLLGSMNAEERLAAFLLNLSQRLKARGYSASEFHLRMTRAEIGSYLGMKLETVSRT FSAFQQQGLLEVDKRHIRIVNLDGLTRVFEMHLH
Sequences:
>Translated_274_residues MSTATLIRTQERTQERTQETPASDLRVIPIRQAMGDAQVAPLGTPCSSCHLCDLCLPCGMTDGDVECLDSLTFGRRKVKA GQTLFDEGDHFQFMYAVRSGTFKSSLMLADGREQISGFHMAGELIGLDGVAYGKHASTATALEDTEVCVIPYAQLTRLAT GNASMQNMVSRLMSREIIREHSLMLLLGSMNAEERLAAFLLNLSQRLKARGYSASEFHLRMTRAEIGSYLGMKLETVSRT FSAFQQQGLLEVDKRHIRIVNLDGLTRVFEMHLH >Mature_273_residues STATLIRTQERTQERTQETPASDLRVIPIRQAMGDAQVAPLGTPCSSCHLCDLCLPCGMTDGDVECLDSLTFGRRKVKAG QTLFDEGDHFQFMYAVRSGTFKSSLMLADGREQISGFHMAGELIGLDGVAYGKHASTATALEDTEVCVIPYAQLTRLATG NASMQNMVSRLMSREIIREHSLMLLLGSMNAEERLAAFLLNLSQRLKARGYSASEFHLRMTRAEIGSYLGMKLETVSRTF SAFQQQGLLEVDKRHIRIVNLDGLTRVFEMHLH
Specific function: May regulate gene expression in response to changes in oxygen levels or to changes in the redox potential of the bacterial environment [H]
COG id: COG0664
COG function: function code T; cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 HTH crp-type DNA-binding domain [H]
Homologues:
Organism=Escherichia coli, GI1787595, Length=242, Percent_Identity=41.3223140495868, Blast_Score=203, Evalue=8e-54,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR018490 - InterPro: IPR000595 - InterPro: IPR001808 - InterPro: IPR012318 - InterPro: IPR014710 - InterPro: IPR018335 - InterPro: IPR011991 [H]
Pfam domain/function: PF00027 cNMP_binding; PF00325 Crp [H]
EC number: NA
Molecular weight: Translated: 30411; Mature: 30280
Theoretical pI: Translated: 6.99; Mature: 6.99
Prosite motif: PS50042 CNMP_BINDING_3 ; PS51063 HTH_CRP_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.6 %Cys (Translated Protein) 5.1 %Met (Translated Protein) 7.7 %Cys+Met (Translated Protein) 2.6 %Cys (Mature Protein) 4.8 %Met (Mature Protein) 7.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTATLIRTQERTQERTQETPASDLRVIPIRQAMGDAQVAPLGTPCSSCHLCDLCLPCGM CCCHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHCCCCCCCCCCCCCCCCCHHHHHHCCCC TDGDVECLDSLTFGRRKVKAGQTLFDEGDHFQFMYAVRSGTFKSSLMLADGREQISGFHM CCCHHHHHHHHHHHHHHHHCCCHHHCCCCCEEEEEEECCCCCHHEEEEECCHHHHHHHHH AGELIGLDGVAYGKHASTATALEDTEVCVIPYAQLTRLATGNASMQNMVSRLMSREIIRE HHHEECCCCCCCCCCCCCHHHCCCCCEEEECHHHHHHHHCCCHHHHHHHHHHHHHHHHHH HSLMLLLGSMNAEERLAAFLLNLSQRLKARGYSASEFHLRMTRAEIGSYLGMKLETVSRT HCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCHHHEEHHHHHHHHHHCCHHHHHHHH FSAFQQQGLLEVDKRHIRIVNLDGLTRVFEMHLH HHHHHHCCCHHCCCCEEEEEECCHHHHHHHHHCC >Mature Secondary Structure STATLIRTQERTQERTQETPASDLRVIPIRQAMGDAQVAPLGTPCSSCHLCDLCLPCGM CCHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHCCCCCCCCCCCCCCCCCHHHHHHCCCC TDGDVECLDSLTFGRRKVKAGQTLFDEGDHFQFMYAVRSGTFKSSLMLADGREQISGFHM CCCHHHHHHHHHHHHHHHHCCCHHHCCCCCEEEEEEECCCCCHHEEEEECCHHHHHHHHH AGELIGLDGVAYGKHASTATALEDTEVCVIPYAQLTRLATGNASMQNMVSRLMSREIIRE HHHEECCCCCCCCCCCCCHHHCCCCCEEEECHHHHHHHHCCCHHHHHHHHHHHHHHHHHH HSLMLLLGSMNAEERLAAFLLNLSQRLKARGYSASEFHLRMTRAEIGSYLGMKLETVSRT HCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCHHHEEHHHHHHHHHHCCHHHHHHHH FSAFQQQGLLEVDKRHIRIVNLDGLTRVFEMHLH HHHHHHCCCHHCCCCEEEEEECCHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: Fe [C]
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7693656; 12910271 [H]