Definition | Polaromonas sp. JS666 chromosome, complete genome. |
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Accession | NC_007948 |
Length | 5,200,264 |
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The map label for this gene is hisF [H]
Identifier: 91786711
GI number: 91786711
Start: 834848
End: 835627
Strand: Direct
Name: hisF [H]
Synonym: Bpro_0809
Alternate gene names: 91786711
Gene position: 834848-835627 (Clockwise)
Preceding gene: 91786710
Following gene: 91786712
Centisome position: 16.05
GC content: 65.51
Gene sequence:
>780_bases ATGTTAGCCAAACGAATCATCCCTTGCCTGGACGTCACCGGCGGCCGTGTGGTCAAGGGCGTCAACTTTGTCGAGTTGCG TGATGCCGGCGACCCGGTGGAAATTGCCGCGCGCTACAACGAGCAGGGTGCAGACGAGCTGACTTTTCTGGACATCACGG CCACCAGCGATGGGCGCGACCTGATTTTGCACATCATCGAGGCGGTGGCCTCACAGGTGTTCATTCCGCTCACCGTGGGC GGCGGTGTGCGCACGGTGGAAGACGTGCGGCGCCTGCTCAATGCCGGGGCTGACAAGACCAGCTTCAACTCGGCCGCGCT GGCCAATCCGCAGGTGATTGAAGACGCCTCGGCCAAATACGGCGCGCAGTGCATCGTGGTGGCGATTGACGCCAAGCGAC GCAGCGAGGAAGACGCCAGAACGCGCGGCGCCGGCTGGGACGTCTACAGCCACGGCGGGCGCAAGAACACCGGGCTGGAC GCCGTGGCCTGGGCCACCGAGATGGCGCGGCGCGGTGCCGGCGAGATCCTGCTGACCAGCATGGACCGCGACGGCACCAA GTCGGGGTTTGACCTGGCCCTGACCCGTGCGGTCAGCGACGCCGTCGATGTGCCGGTGATTGCCTCGGGCGGCGTTGGCA ACCTGGACCATCTGGCCGATGGCATCCAGCTGGGTGGCGCTGACGCGGTGCTGGCGGCCAGCATTTTCCACTATGGTGAA TACACGGTGCAGCAGGCCAAGCAGCACATGGCCAGGCGCGGCATCCCGGTCAGAATGTGA
Upstream 100 bases:
>100_bases TATTCCAGCCAGGGCCGCGGAACCGGCTTCGCCGGGCCGCAGGCGCAGCGGCCCCCTCGGGGGGCAGGGCGCCACACGAA GTGGGCAACCGTGGGGGCTT
Downstream 100 bases:
>100_bases CGCAGCCCCGCAGGCTTCGCGCACTGCGTGTCGCTACACCTTCCCCCTGCCGGGGCGACATCTGCGGTCCGGCCAAGCCG GCCCCGCGATGTCCTGGCCT
Product: imidazole glycerol phosphate synthase subunit HisF
Products: NA
Alternate protein names: IGP synthase cyclase subunit; IGP synthase subunit hisF; ImGP synthase subunit hisF; IGPS subunit hisF [H]
Number of amino acids: Translated: 259; Mature: 259
Protein sequence:
>259_residues MLAKRIIPCLDVTGGRVVKGVNFVELRDAGDPVEIAARYNEQGADELTFLDITATSDGRDLILHIIEAVASQVFIPLTVG GGVRTVEDVRRLLNAGADKTSFNSAALANPQVIEDASAKYGAQCIVVAIDAKRRSEEDARTRGAGWDVYSHGGRKNTGLD AVAWATEMARRGAGEILLTSMDRDGTKSGFDLALTRAVSDAVDVPVIASGGVGNLDHLADGIQLGGADAVLAASIFHYGE YTVQQAKQHMARRGIPVRM
Sequences:
>Translated_259_residues MLAKRIIPCLDVTGGRVVKGVNFVELRDAGDPVEIAARYNEQGADELTFLDITATSDGRDLILHIIEAVASQVFIPLTVG GGVRTVEDVRRLLNAGADKTSFNSAALANPQVIEDASAKYGAQCIVVAIDAKRRSEEDARTRGAGWDVYSHGGRKNTGLD AVAWATEMARRGAGEILLTSMDRDGTKSGFDLALTRAVSDAVDVPVIASGGVGNLDHLADGIQLGGADAVLAASIFHYGE YTVQQAKQHMARRGIPVRM >Mature_259_residues MLAKRIIPCLDVTGGRVVKGVNFVELRDAGDPVEIAARYNEQGADELTFLDITATSDGRDLILHIIEAVASQVFIPLTVG GGVRTVEDVRRLLNAGADKTSFNSAALANPQVIEDASAKYGAQCIVVAIDAKRRSEEDARTRGAGWDVYSHGGRKNTGLD AVAWATEMARRGAGEILLTSMDRDGTKSGFDLALTRAVSDAVDVPVIASGGVGNLDHLADGIQLGGADAVLAASIFHYGE YTVQQAKQHMARRGIPVRM
Specific function: IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The hisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the hisH subunit [H]
COG id: COG0107
COG function: function code E; Imidazoleglycerol-phosphate synthase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the hisA/hisF family [H]
Homologues:
Organism=Escherichia coli, GI1788336, Length=270, Percent_Identity=41.8518518518518, Blast_Score=208, Evalue=3e-55, Organism=Escherichia coli, GI87082028, Length=245, Percent_Identity=28.9795918367347, Blast_Score=95, Evalue=5e-21, Organism=Saccharomyces cerevisiae, GI6319725, Length=314, Percent_Identity=35.6687898089172, Blast_Score=160, Evalue=2e-40,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013785 - InterPro: IPR006062 - InterPro: IPR004651 - InterPro: IPR011060 [H]
Pfam domain/function: PF00977 His_biosynth [H]
EC number: 4.1.3.-
Molecular weight: Translated: 27443; Mature: 27443
Theoretical pI: Translated: 5.37; Mature: 5.37
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLAKRIIPCLDVTGGRVVKGVNFVELRDAGDPVEIAARYNEQGADELTFLDITATSDGRD CCHHHCCCHHCCCCCEEEECCCEEEECCCCCCEEEHEECCCCCCCCEEEEEEEECCCCHH LILHIIEAVASQVFIPLTVGGGVRTVEDVRRLLNAGADKTSFNSAALANPQVIEDASAKY HHHHHHHHHHHCEEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCC GAQCIVVAIDAKRRSEEDARTRGAGWDVYSHGGRKNTGLDAVAWATEMARRGAGEILLTS CCEEEEEEEECCCCCCHHHHHCCCCCCHHCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEE MDRDGTKSGFDLALTRAVSDAVDVPVIASGGVGNLDHLADGIQLGGADAVLAASIFHYGE CCCCCCCCCHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHH YTVQQAKQHMARRGIPVRM HHHHHHHHHHHHCCCCCCC >Mature Secondary Structure MLAKRIIPCLDVTGGRVVKGVNFVELRDAGDPVEIAARYNEQGADELTFLDITATSDGRD CCHHHCCCHHCCCCCEEEECCCEEEECCCCCCEEEHEECCCCCCCCEEEEEEEECCCCHH LILHIIEAVASQVFIPLTVGGGVRTVEDVRRLLNAGADKTSFNSAALANPQVIEDASAKY HHHHHHHHHHHCEEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCC GAQCIVVAIDAKRRSEEDARTRGAGWDVYSHGGRKNTGLDAVAWATEMARRGAGEILLTS CCEEEEEEEECCCCCCHHHHHCCCCCCHHCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEE MDRDGTKSGFDLALTRAVSDAVDVPVIASGGVGNLDHLADGIQLGGADAVLAASIFHYGE CCCCCCCCCHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHH YTVQQAKQHMARRGIPVRM HHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Lyases; Carbon-Nitrogen Lyases; Amidine-Lyases [C]
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA