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The map label for this gene is secB

Identifier: 161936271

GI number: 161936271

Start: 909521

End: 909973

Strand: Direct

Name: secB

Synonym: Bpro_0889

Alternate gene names: 161936271

Gene position: 909521-909973 (Clockwise)

Preceding gene: 91786790

Following gene: 91786792

Centisome position: 17.49

GC content: 57.62

Gene sequence:

>453_bases
ATGGCTGAAGCCAATCTTGATCCCGTATTCCAGATCCAGCGCGTTTACCTCAAGGACGTGTCGCTGGAGCAGCCCAATTC
GCCCGAAATCCTGCTGAACCAGGAGCAGCCAGGTGTCGACATCCAGCTGGGCGTCGATGCCAAGCCGGTGGCTGACGGCA
TGTTTGAAGTCACCGTGACCGCCACCGTGCATACCAAAATTGCCGACAAGACAGTCTTTCTGGTCGAAGCCAAGCAGGCG
GGCATTTTTGAAATCCGCAACATGCAGACTGACCAGCTCGGTGCGATCCTGGGTATTGCCTGCCCGCAGATTGTTTACCC
TTACCTGCGCAGCAACGTGGCCGACGTGATCCAGCGCGGCGGTTTTCCGCCCGTGCACATGGCTGAAATCAATTTCCAGG
CCATGTACGAGCAGCAGCAGGCCGAGGCCGCCACGCCCCAAATCATCGTTTAA

Upstream 100 bases:

>100_bases
TCAGCCCGGGTCCGCAGGTTCTACTGAGATAATGCCCTGTTGCCTGCCCTTGGGGGCAGGCTCCTACCTTCCAATTTATT
CAAGCACCCGAAAGAGCACC

Downstream 100 bases:

>100_bases
GGGGCGGCTGAACCGCTGCCCGCCTTTTTCGCTCATCCGCTCATCTGGACATGAAAATAGTCGTCATTGGTGCCGGCGCA
TGGGGTACGGCACTGGCCGT

Product: preprotein translocase subunit SecB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 150; Mature: 149

Protein sequence:

>150_residues
MAEANLDPVFQIQRVYLKDVSLEQPNSPEILLNQEQPGVDIQLGVDAKPVADGMFEVTVTATVHTKIADKTVFLVEAKQA
GIFEIRNMQTDQLGAILGIACPQIVYPYLRSNVADVIQRGGFPPVHMAEINFQAMYEQQQAEAATPQIIV

Sequences:

>Translated_150_residues
MAEANLDPVFQIQRVYLKDVSLEQPNSPEILLNQEQPGVDIQLGVDAKPVADGMFEVTVTATVHTKIADKTVFLVEAKQA
GIFEIRNMQTDQLGAILGIACPQIVYPYLRSNVADVIQRGGFPPVHMAEINFQAMYEQQQAEAATPQIIV
>Mature_149_residues
AEANLDPVFQIQRVYLKDVSLEQPNSPEILLNQEQPGVDIQLGVDAKPVADGMFEVTVTATVHTKIADKTVFLVEAKQAG
IFEIRNMQTDQLGAILGIACPQIVYPYLRSNVADVIQRGGFPPVHMAEINFQAMYEQQQAEAATPQIIV

Specific function: One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its r

COG id: COG1952

COG function: function code U; Preprotein translocase subunit SecB

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secB family

Homologues:

Organism=Escherichia coli, GI1790038, Length=146, Percent_Identity=38.3561643835616, Blast_Score=119, Evalue=6e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SECB_POLSJ (Q12F47)

Other databases:

- EMBL:   CP000316
- RefSeq:   YP_547743.2
- ProteinModelPortal:   Q12F47
- SMR:   Q12F47
- STRING:   Q12F47
- GeneID:   4011197
- GenomeReviews:   CP000316_GR
- KEGG:   pol:Bpro_0889
- NMPDR:   fig|296591.1.peg.3044
- eggNOG:   COG1952
- HOGENOM:   HBG294212
- ProtClustDB:   PRK05751
- BioCyc:   PSP296591:BPRO_0889-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00821
- InterPro:   IPR003708
- Gene3D:   G3DSA:3.10.420.10
- PRINTS:   PR01594
- TIGRFAMs:   TIGR00809

Pfam domain/function: PF02556 SecB; SSF54611 SecB

EC number: NA

Molecular weight: Translated: 16522; Mature: 16391

Theoretical pI: Translated: 4.23; Mature: 4.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEANLDPVFQIQRVYLKDVSLEQPNSPEILLNQEQPGVDIQLGVDAKPVADGMFEVTVT
CCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCEEEECCCCCCCCCCEEEEEEE
ATVHTKIADKTVFLVEAKQAGIFEIRNMQTDQLGAILGIACPQIVYPYLRSNVADVIQRG
EEEEEEECCCEEEEEECCCCCEEEECCCCCHHHHHHHHHHCHHHHHHHHHCCHHHHHHCC
GFPPVHMAEINFQAMYEQQQAEAATPQIIV
CCCCEEEEECCHHHHHHHHHHHHCCCEEEC
>Mature Secondary Structure 
AEANLDPVFQIQRVYLKDVSLEQPNSPEILLNQEQPGVDIQLGVDAKPVADGMFEVTVT
CCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCEEEECCCCCCCCCCEEEEEEE
ATVHTKIADKTVFLVEAKQAGIFEIRNMQTDQLGAILGIACPQIVYPYLRSNVADVIQRG
EEEEEEECCCEEEEEECCCCCEEEECCCCCHHHHHHHHHHCHHHHHHHHHCCHHHHHHCC
GFPPVHMAEINFQAMYEQQQAEAATPQIIV
CCCCEEEEECCHHHHHHHHHHHHCCCEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA