Click here to switch to the map view.

The map label for this gene is tdcR [H]

Identifier: 162138370

GI number: 162138370

Start: 3493161

End: 3493505

Strand: Direct

Name: tdcR [H]

Synonym: UTI89_C3554

Alternate gene names: 162138370

Gene position: 3493161-3493505 (Clockwise)

Preceding gene: 91212535

Following gene: 91212550

Centisome position: 68.96

GC content: 31.59

Gene sequence:

>345_bases
ATGACGGGGATAACCATATTTTATGGCGATAACATCATTCTTTATGTGGTTAATACAAAAAAGGGGCTGAGACTATATTT
CAAGCAATTACCGGATAATTACCAGGCAAAATTTGAGTTAAATTTAATGAGTAAGTTCTCAAATTTTATTATAAACAAAC
CATTTTCAGCGATAAATAATGCGGCACGTCACATTTTTTCACGCTATTTGTTGGAGAACAAACATTTATTTTATCAATAT
TTTAAAATTTCGAATACAGGTATTGATCATCTCGAACAATTGATTAACGTCAACCTTTTCTCTTCTGGCAGGACGTCATT
TTGTGAATGCAATCGTTTTCCATAA

Upstream 100 bases:

>100_bases
CAATACTTTCCATGGCATCGTTACCAAAATTAAATACCCTTAAGTATCAACAAGTTAAAGTATGAAAAATCAGCATAAAC
CCTGATTTTTGTCAAAAAAA

Downstream 100 bases:

>100_bases
ATTCTTCTCCCCTCATAGGCAACGAATAGCATTTTGTGTTGAGGATCACAAAACGAATAATTGCTGGTCGCCGCGATAAG
GTCAGACGAAGACAACAAGG

Product: DNA-binding transcriptional activator TdcR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 114; Mature: 113

Protein sequence:

>114_residues
MTGITIFYGDNIILYVVNTKKGLRLYFKQLPDNYQAKFELNLMSKFSNFIINKPFSAINNAARHIFSRYLLENKHLFYQY
FKISNTGIDHLEQLINVNLFSSGRTSFCECNRFP

Sequences:

>Translated_114_residues
MTGITIFYGDNIILYVVNTKKGLRLYFKQLPDNYQAKFELNLMSKFSNFIINKPFSAINNAARHIFSRYLLENKHLFYQY
FKISNTGIDHLEQLINVNLFSSGRTSFCECNRFP
>Mature_113_residues
TGITIFYGDNIILYVVNTKKGLRLYFKQLPDNYQAKFELNLMSKFSNFIINKPFSAINNAARHIFSRYLLENKHLFYQYF
KISNTGIDHLEQLINVNLFSSGRTSFCECNRFP

Specific function: Probable trans-acting positive activator for the tdc operon [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87082214, Length=72, Percent_Identity=93.0555555555556, Blast_Score=137, Evalue=2e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 13434; Mature: 13302

Theoretical pI: Translated: 9.82; Mature: 9.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTGITIFYGDNIILYVVNTKKGLRLYFKQLPDNYQAKFELNLMSKFSNFIINKPFSAINN
CCCEEEEECCCEEEEEEECCCCHHHHHHHCCCCCCEEEEEHHHHHHHHHHHCCCHHHHHH
AARHIFSRYLLENKHLFYQYFKISNTGIDHLEQLINVNLFSSGRTSFCECNRFP
HHHHHHHHHHHCCCCEEEEEEEECCCCHHHHHHHHCCCCCCCCCCCEEECCCCC
>Mature Secondary Structure 
TGITIFYGDNIILYVVNTKKGLRLYFKQLPDNYQAKFELNLMSKFSNFIINKPFSAINN
CCEEEEECCCEEEEEEECCCCHHHHHHHCCCCCCEEEEEHHHHHHHHHHHCCCHHHHHH
AARHIFSRYLLENKHLFYQYFKISNTGIDHLEQLINVNLFSSGRTSFCECNRFP
HHHHHHHHHHHCCCCEEEEEEEECCCCHHHHHHHHCCCCCCCCCCCEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2660107; 2573820; 9278503; 7928991 [H]