Definition | Saccharophagus degradans 2-40 chromosome, complete genome. |
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Accession | NC_007912 |
Length | 5,057,531 |
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Identifier: 90020510
GI number:
Start: 1119009
End: 1120730
Strand: Reverse
Name: Not Available
Synonym: Sde_0863
Alternate gene names: NA
Gene position: NA
Preceding gene: 90020513
Following gene: 90020509
Centisome position: NA
GC content: NA
Gene sequence:
>1722_bases ATGGGTAGCCAAGCAATAGTACTTAGCGGTCTAGCAAGGCGATTGGTAAGAGACAGCGTTTTAAACGAAGAAGAAGCGAG GCTAGCCCTTGAAGAAGCAACAAAAGCCAAGTTACCACTCCCTATTTACCTTTCTCAAAAAAGTGGCATTAGCGCCCTCA CTATAGCCACAGCAGCCTCGGAAGAGTTCGGCACCCCCCTATGCGATTTACGAGCAGTTAGGAAAGACTCCATACCGGTT GGCCTCGTCGACAAAAAGCTAATAAGTAAACATCACGCCCTTCCCCTTTTTAAACGTGGGAACCGGCTATTTGTAGCCCT AACAGATCCAACCAATCTACATGCTATCGATGAGATTAAATTCAATACAGGATTAACTACAGAAGCAGTACTTGCCGAAG CAGATATCTTAAACACCTATATTGAAGCATATTTAAATGCAGAGGAAGAAAGCCTTAGCGATTCATTAGGAGGCTTAGAC GGTGACGGCTTGGACATTGAGGCCGTCGACGAGGAAGGAAGAACACCAGGCGAAGACACCTCTGAAATAGATGAAACCCC TATTGTTCGGTTTGTAAACAAAGTGCTACTAGATGCCATTAAAATAGGTGCTTCAGATATTCACTTTGAGCCTTACGAGA AAACCTATCGGGTTCGATATAGAACAGACGGCATTCTCAAAGAAGTAGCCAGACCCCCAACAAACCTAGCACCAAGAATA TCTGCACGACTTAAAGTTATGTCGCAAATGGACATATCTGAACGGCGGGTACCCCAAGATGGCCGCATTAAAATGAAGCT CTCTAAAACGCGCGCCATCGATTTTCGTGTAAACACTCTCCCAACGCTTTTTGGCGAGAAAGTGGTGTTGCGGATCTTAG ACCCATCCAGTGCAAAGCTCGGTATTGACGCTTTAGGCTACGAAGATTTTCAGAAAAAGCTATTTATGGATGCCCTCCAT CAACCACAGGGCATGATTCTTGTTACTGGCCCAACCGGTTCAGGTAAAACAGTATCTCTTTATACGGGACTGAATATACT AAACACCCCGGAACGAAACATTTCTACCGCGGAAGACCCAGTAGAAATCAACCTTGAGGGTATTAACCAAGTAAACGTTA GTAATAAAGTTGGGCTAACATTTGCCGAAGCTTTACGCTCCTTTCTTCGTCAAGACCCTGATATTGTGATGGTGGGCGAG ATACGCGACCTAGAAACAGCGGAAATTGGCATTAAAGCAGCGCAAACAGGTCACTTAGTGCTATCCACGCTTCACACCAA CAGTGCCGCTGAAACTTTAACGCGCCTAATGAACATGGGGGTTCCTACGTTTAACGTGGCAACAACCGTAAGCCTGATTA TTGCCCAGCGTCTTGCTCGGCGATTATGCTCTGAATGTAAGATACCCGCCGACGATATAACTAACGAGGTATTAACAGAA GAAGGCTTCGACGATATAGGTATAGATAGAAAAGATTTTCAACTTTTTCACCCCAAAGGGTGCGACAAATGTAATAACGG CTATAAAGGCCGCGTAGGTATTTATGAAGTTGTTCGCATTACCCCACAGATATCTCGCATTATAATGAGCGGTGGCAGCG CAATCGACATAGCCGACGCAGCAAAAGAAGCCGGCTTTTTTAACTTACGGGTTGCGGCACTGCGCAAAGCGGCAACAGGC CTAACCAGCTTAGAAGAAGCAAACCGAGTAACCAAGGACTAA
Upstream 100 bases:
>100_bases TCTTCAAAATAATGGTAAAGTTTATAGATTGAAAATACTGAGATATAGCTATAGTCAGCTAAGCTTATTACAGAAAAAGG TAAACTTAGGGTGAACAAGC
Downstream 100 bases:
>100_bases TTCATGGCAAAGGCAACAACAACCGAAGTTTTTGTTTACAAGGGTGTCGACAAAAAAGGCCAAAAGGTAGAAGGGTCTGT AACCAGCATTAGCTCAGCAA
Product: type 4 fimbrial biogenesis protein PilB
Products: NA
Alternate protein names: NA
Number of amino acids: NA
Protein sequence:
>573_residues MGSQAIVLSGLARRLVRDSVLNEEEARLALEEATKAKLPLPIYLSQKSGISALTIATAASEEFGTPLCDLRAVRKDSIPV GLVDKKLISKHHALPLFKRGNRLFVALTDPTNLHAIDEIKFNTGLTTEAVLAEADILNTYIEAYLNAEEESLSDSLGGLD GDGLDIEAVDEEGRTPGEDTSEIDETPIVRFVNKVLLDAIKIGASDIHFEPYEKTYRVRYRTDGILKEVARPPTNLAPRI SARLKVMSQMDISERRVPQDGRIKMKLSKTRAIDFRVNTLPTLFGEKVVLRILDPSSAKLGIDALGYEDFQKKLFMDALH QPQGMILVTGPTGSGKTVSLYTGLNILNTPERNISTAEDPVEINLEGINQVNVSNKVGLTFAEALRSFLRQDPDIVMVGE IRDLETAEIGIKAAQTGHLVLSTLHTNSAAETLTRLMNMGVPTFNVATTVSLIIAQRLARRLCSECKIPADDITNEVLTE EGFDDIGIDRKDFQLFHPKGCDKCNNGYKGRVGIYEVVRITPQISRIIMSGGSAIDIADAAKEAGFFNLRVAALRKAATG LTSLEEANRVTKD
Sequences:
NA
Specific function: NA
COG id: COG2804
COG function: function code NU; Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB
Gene ontology:
Cell location: NA
Metaboloic importance: NA
Operon status: NA
Operon components: NA
Similarity: NA
Homologues:
NA
Paralogues:
NA
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: NA
Theoretical pI: NA
Prosite motif: NA
Important sites: NA
Signals:
NA
Transmembrane regions:
NA
Cys/Met content:
NA
Secondary structure: NA
PDB accession: NA
Resolution: NA
Structure class: NA
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: NA
TargetDB status: NA
Availability: NA
References: NA