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The map label for this gene is 89885847

Identifier: 89885847

GI number: 89885847

Start: 125746

End: 126975

Strand: Reverse

Name: 89885847

Synonym: Rfer_4361

Alternate gene names: NA

Gene position: 126975-125746 (Counterclockwise)

Preceding gene: 89885848

Following gene: 89885846

Centisome position: 49.32

GC content: 55.2

Gene sequence:

>1230_bases
ATGCCCGGCATTTGGCCGGGCCATCATCAACAACAAGAGCGCTATCCACCAGCTTCTGCTGGGTGCGGAGCGCTCTTTCC
TTTCGAGAAAAACATGACTGAAGAACTAGCCAAAAACACATCCCTTTATTCCAGGCACAACGGTGCCGACAAGGTCTACC
ATGCCTACCTTCGCAAGAAAGACGACGGCTGGACAGTTGATTACGCGCACGGTGGCCGGGGCAAGGCCCTCAAAGTCGGA
ACGAGAACTGAAACGCCGGTTGCCTATGTCAAAGCCCTCAAAATCTTTGAGTCACTGGTCAACAGCAAAAAGAACGGCGA
CAGCCACTATCAGGAAGGGGAGGCCGGCACCGCCTACGAGAACATCACCGATAGCAAGGAACTGTTTGGCATCTTTCCGC
AAGAGCCGACCGCGATCCAGCGCGCGGCACTGAAAGCGCTCATTTTTGACAATGACTGGTGCTTCCAGGTCAAGGCCAAT
GGCGAAAACCGTTTGCTGTCCATCAAGGGTGACTGCGCACGCGGCGGCAACAAGAAGGGGCAGGTTGTTTCCATTCCCAC
CCACTGGCTCACCGAGTTCAAGGCCTTGGGCAATTTCGTTGCCAACGGCGAGCACGTGGGCGATCGCTTCATCGCTTTCG
ATTTGCTCGAATACGAAGGCATTGACATGCGGGGCTGGCCACAACGTCGACGCTTCGCCAAGCTGCTCGAAATGTATGAC
AGCATGAACGATGTGGCCAATGTGACTCCGAGTTTCGGAGTCATCGAGTGCTACTACACCGCCGATGAAAAGCAGGCGCT
GTTGCAGCGGGCCGAAGATATCCGACTCGAAGGCATCGTGGCCAAAAACGCTCGCGGCGTCTACGCACAAGGTCGAGGCC
CTGACAGCTTGAAATTCGTGTTTCGTGAAGTGTCGACTTGTATCGTCATGGCCAGAAATGTCCAGCGCTCGGTGCAAGTG
GGCTTGCTCAACAGTGAAGGTGATCTGGTGAGCCGAGGCAATGTCACCATTCCTCCGAACAAGCCAGTACCTGAAGTCGA
TGCCCTAGTCGACGTCCAGTATATGTATGACAATGGCAAATCCTTTGTCATCTCTGTTTACGATCCCGACAATAAGAGCC
CACGGAGCGACGTAGAACGGCACGAATGCACGCTGTCGCAAGTCACGCGCACGATGCCAGACGAAGAATATGTCGACCCG
GAGGCCTATCACCGACGCCAGTGCGCCTGA

Upstream 100 bases:

>100_bases
CAAAAAGCCCCTCAACAGCAAAAAGGCGCCACCGGTGGCCCAGGCTGTGGATCTCCAACAGGTTCAAGCCGCACTTTTTT
GAAGAGCTGGTTCACCTGAC

Downstream 100 bases:

>100_bases
CGGATAGTCCCGGCAACTGACGAACTTTCAAAACAAAAAAGCCCACTGCAGCCTCACCAGGTTGCCGGTGGGCTTTTTTC
GTTGGTGAAACACGGCATTT

Product: ATP dependent DNA ligase

Products: NA

Alternate protein names: ATP Dependent DNA Ligase

Number of amino acids: Translated: 409; Mature: 408

Protein sequence:

>409_residues
MPGIWPGHHQQQERYPPASAGCGALFPFEKNMTEELAKNTSLYSRHNGADKVYHAYLRKKDDGWTVDYAHGGRGKALKVG
TRTETPVAYVKALKIFESLVNSKKNGDSHYQEGEAGTAYENITDSKELFGIFPQEPTAIQRAALKALIFDNDWCFQVKAN
GENRLLSIKGDCARGGNKKGQVVSIPTHWLTEFKALGNFVANGEHVGDRFIAFDLLEYEGIDMRGWPQRRRFAKLLEMYD
SMNDVANVTPSFGVIECYYTADEKQALLQRAEDIRLEGIVAKNARGVYAQGRGPDSLKFVFREVSTCIVMARNVQRSVQV
GLLNSEGDLVSRGNVTIPPNKPVPEVDALVDVQYMYDNGKSFVISVYDPDNKSPRSDVERHECTLSQVTRTMPDEEYVDP
EAYHRRQCA

Sequences:

>Translated_409_residues
MPGIWPGHHQQQERYPPASAGCGALFPFEKNMTEELAKNTSLYSRHNGADKVYHAYLRKKDDGWTVDYAHGGRGKALKVG
TRTETPVAYVKALKIFESLVNSKKNGDSHYQEGEAGTAYENITDSKELFGIFPQEPTAIQRAALKALIFDNDWCFQVKAN
GENRLLSIKGDCARGGNKKGQVVSIPTHWLTEFKALGNFVANGEHVGDRFIAFDLLEYEGIDMRGWPQRRRFAKLLEMYD
SMNDVANVTPSFGVIECYYTADEKQALLQRAEDIRLEGIVAKNARGVYAQGRGPDSLKFVFREVSTCIVMARNVQRSVQV
GLLNSEGDLVSRGNVTIPPNKPVPEVDALVDVQYMYDNGKSFVISVYDPDNKSPRSDVERHECTLSQVTRTMPDEEYVDP
EAYHRRQCA
>Mature_408_residues
PGIWPGHHQQQERYPPASAGCGALFPFEKNMTEELAKNTSLYSRHNGADKVYHAYLRKKDDGWTVDYAHGGRGKALKVGT
RTETPVAYVKALKIFESLVNSKKNGDSHYQEGEAGTAYENITDSKELFGIFPQEPTAIQRAALKALIFDNDWCFQVKANG
ENRLLSIKGDCARGGNKKGQVVSIPTHWLTEFKALGNFVANGEHVGDRFIAFDLLEYEGIDMRGWPQRRRFAKLLEMYDS
MNDVANVTPSFGVIECYYTADEKQALLQRAEDIRLEGIVAKNARGVYAQGRGPDSLKFVFREVSTCIVMARNVQRSVQVG
LLNSEGDLVSRGNVTIPPNKPVPEVDALVDVQYMYDNGKSFVISVYDPDNKSPRSDVERHECTLSQVTRTMPDEEYVDPE
AYHRRQCA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 45917; Mature: 45786

Theoretical pI: Translated: 6.68; Mature: 6.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPGIWPGHHQQQERYPPASAGCGALFPFEKNMTEELAKNTSLYSRHNGADKVYHAYLRKK
CCCCCCCCCCHHHCCCCCCCCCCEECCCCCCHHHHHHHCCHHHHCCCCHHHHHHHHHHCC
DDGWTVDYAHGGRGKALKVGTRTETPVAYVKALKIFESLVNSKKNGDSHYQEGEAGTAYE
CCCCEEEECCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHCCCCCCCCHH
NITDSKELFGIFPQEPTAIQRAALKALIFDNDWCFQVKANGENRLLSIKGDCARGGNKKG
CCCCCHHHEEECCCCCHHHHHHHHHHEEECCCEEEEEEECCCCEEEEEECCCCCCCCCCC
QVVSIPTHWLTEFKALGNFVANGEHVGDRFIAFDLLEYEGIDMRGWPQRRRFAKLLEMYD
CEEECCHHHHHHHHHHHHHHCCCCHHCCCEEEEEEHHHCCCCCCCCHHHHHHHHHHHHHH
SMNDVANVTPSFGVIECYYTADEKQALLQRAEDIRLEGIVAKNARGVYAQGRGPDSLKFV
HHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHCEEEEEEECCCCCEEECCCCCHHHHHH
FREVSTCIVMARNVQRSVQVGLLNSEGDLVSRGNVTIPPNKPVPEVDALVDVQYMYDNGK
HHHHHHHHHHHHHHHCEEEEEEECCCCCEEECCCEECCCCCCCCCHHHHEEEEEEEECCC
SFVISVYDPDNKSPRSDVERHECTLSQVTRTMPDEEYVDPEAYHRRQCA
EEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCHHCCCCHHHHHCCCC
>Mature Secondary Structure 
PGIWPGHHQQQERYPPASAGCGALFPFEKNMTEELAKNTSLYSRHNGADKVYHAYLRKK
CCCCCCCCCHHHCCCCCCCCCCEECCCCCCHHHHHHHCCHHHHCCCCHHHHHHHHHHCC
DDGWTVDYAHGGRGKALKVGTRTETPVAYVKALKIFESLVNSKKNGDSHYQEGEAGTAYE
CCCCEEEECCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHCCCCCCCCHH
NITDSKELFGIFPQEPTAIQRAALKALIFDNDWCFQVKANGENRLLSIKGDCARGGNKKG
CCCCCHHHEEECCCCCHHHHHHHHHHEEECCCEEEEEEECCCCEEEEEECCCCCCCCCCC
QVVSIPTHWLTEFKALGNFVANGEHVGDRFIAFDLLEYEGIDMRGWPQRRRFAKLLEMYD
CEEECCHHHHHHHHHHHHHHCCCCHHCCCEEEEEEHHHCCCCCCCCHHHHHHHHHHHHHH
SMNDVANVTPSFGVIECYYTADEKQALLQRAEDIRLEGIVAKNARGVYAQGRGPDSLKFV
HHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHCEEEEEEECCCCCEEECCCCCHHHHHH
FREVSTCIVMARNVQRSVQVGLLNSEGDLVSRGNVTIPPNKPVPEVDALVDVQYMYDNGK
HHHHHHHHHHHHHHHCEEEEEEECCCCCEEECCCEECCCCCCCCCHHHHEEEEEEEECCC
SFVISVYDPDNKSPRSDVERHECTLSQVTRTMPDEEYVDPEAYHRRQCA
EEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCHHCCCCHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA