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The map label for this gene is trfA [H]

Identifier: 89885780

GI number: 89885780

Start: 53614

End: 54591

Strand: Reverse

Name: trfA [H]

Synonym: Rfer_4294

Alternate gene names: 89885780

Gene position: 54591-53614 (Counterclockwise)

Preceding gene: 89885781

Following gene: 89885779

Centisome position: 21.2

GC content: 48.88

Gene sequence:

>978_bases
ATGAAAAACATTTCGGCACTTCTATCGGACGCATTTGCAATCGACGTTGATGTCGTACCACAACCACTGACAACTGAGTC
CGCGTTGTCATTACCACCTGTTTCAAAGGCCCGTCAAGGAAAAGTAAGCAGCGCGGAATTTGCCCGCATGAAAGCCAAGG
AAGCACAAGAAAGGCTGATCAGCAATTCAGAACAGATCGTGCTGGATCTTGCCCTGCCCGATTGGAATGATCTTTTCCGA
GGCGTGCCCAACGGTTTTCTTCGAAGTGGCCTTTTCACCGCACGTTCGAAGTCAGTTCGTGAGGAAATCAAAGGAACACG
CATCGCGTCACTGAGCAACTTCGACGTCCACTACACTGGGTGCGAACTACGACAGGACGATTTAAGTGCTTGGATTGCAC
TGATGACCCGGGCCAGGCTGCAGCCCATTGGCGACAAGATTTATTTTGTTGCCTATTCATTGGTGAAGGACTTGGGATGG
AGTCTTAATTCGGCGAGTTATGCACGACTCAAATCATGCATCGAACGTCTCAAGCTGACATCATTGAAAATTGGATCAAA
GGATCAAAAATCCGCGTATGTTGGATCTTTGGTCCGGGACTTCGCCTACGATGAATTGGATGACAAGGGCAATGTCAGTT
GGATGATCCGTGTGGAGCCAGGTATTGCCAAGTTGTTTGTCGATGAAAACACCACTTTTTTAGAGTGGGAAGAACGCAAG
CGCTTGGGCACGCGCAACTCGTTAGCCCAATGGCTTCACGGCTATTATTCAAGTCACACAATACCAATTCCCATCTCGAT
AGGGAAGCTCCGCGAGCTATGCGAAAGTGGGCAAAAATCGTTACCCAACTTCAAAATACGCACACGCCAAGCCTTGGAGT
TACTCGTCGAAAATGGTTGTCTACTGCGGTACTCGATTACTAACGATTTGGTGTATGTAACCAAGTCCCCTCGGCGCCTG
CGCAGTGTAGGCGATTGA

Upstream 100 bases:

>100_bases
CCAGATTCATCGCTGTTGAAAATCACACCTGATCAACTATGTTGACCGATTGACAGCAACAATCCGGCAATCGAAACTGC
GCCAACTTCAACTGCGACTT

Downstream 100 bases:

>100_bases
AGCATTCACTTTACGCGACACCTATTGAACTTAGGCGCCACCGAACTGGCGCAAACAGGTCAAAAATCAACCCAGGCAGT
TTCTCAAGGGCCGGATGGTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 325; Mature: 325

Protein sequence:

>325_residues
MKNISALLSDAFAIDVDVVPQPLTTESALSLPPVSKARQGKVSSAEFARMKAKEAQERLISNSEQIVLDLALPDWNDLFR
GVPNGFLRSGLFTARSKSVREEIKGTRIASLSNFDVHYTGCELRQDDLSAWIALMTRARLQPIGDKIYFVAYSLVKDLGW
SLNSASYARLKSCIERLKLTSLKIGSKDQKSAYVGSLVRDFAYDELDDKGNVSWMIRVEPGIAKLFVDENTTFLEWEERK
RLGTRNSLAQWLHGYYSSHTIPIPISIGKLRELCESGQKSLPNFKIRTRQALELLVENGCLLRYSITNDLVYVTKSPRRL
RSVGD

Sequences:

>Translated_325_residues
MKNISALLSDAFAIDVDVVPQPLTTESALSLPPVSKARQGKVSSAEFARMKAKEAQERLISNSEQIVLDLALPDWNDLFR
GVPNGFLRSGLFTARSKSVREEIKGTRIASLSNFDVHYTGCELRQDDLSAWIALMTRARLQPIGDKIYFVAYSLVKDLGW
SLNSASYARLKSCIERLKLTSLKIGSKDQKSAYVGSLVRDFAYDELDDKGNVSWMIRVEPGIAKLFVDENTTFLEWEERK
RLGTRNSLAQWLHGYYSSHTIPIPISIGKLRELCESGQKSLPNFKIRTRQALELLVENGCLLRYSITNDLVYVTKSPRRL
RSVGD
>Mature_325_residues
MKNISALLSDAFAIDVDVVPQPLTTESALSLPPVSKARQGKVSSAEFARMKAKEAQERLISNSEQIVLDLALPDWNDLFR
GVPNGFLRSGLFTARSKSVREEIKGTRIASLSNFDVHYTGCELRQDDLSAWIALMTRARLQPIGDKIYFVAYSLVKDLGW
SLNSASYARLKSCIERLKLTSLKIGSKDQKSAYVGSLVRDFAYDELDDKGNVSWMIRVEPGIAKLFVDENTTFLEWEERK
RLGTRNSLAQWLHGYYSSHTIPIPISIGKLRELCESGQKSLPNFKIRTRQALELLVENGCLLRYSITNDLVYVTKSPRRL
RSVGD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010751 [H]

Pfam domain/function: PF07042 TrfA [H]

EC number: NA

Molecular weight: Translated: 36597; Mature: 36597

Theoretical pI: Translated: 9.56; Mature: 9.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNISALLSDAFAIDVDVVPQPLTTESALSLPPVSKARQGKVSSAEFARMKAKEAQERLI
CCCHHHHHHHHHEEEEECCCCCCCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHH
SNSEQIVLDLALPDWNDLFRGVPNGFLRSGLFTARSKSVREEIKGTRIASLSNFDVHYTG
CCCCEEEEEEECCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCEEEECC
CELRQDDLSAWIALMTRARLQPIGDKIYFVAYSLVKDLGWSLNSASYARLKSCIERLKLT
CCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
SLKIGSKDQKSAYVGSLVRDFAYDELDDKGNVSWMIRVEPGIAKLFVDENTTFLEWEERK
HEECCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCEEEEEECCCCEEEEEHHHH
RLGTRNSLAQWLHGYYSSHTIPIPISIGKLRELCESGQKSLPNFKIRTRQALELLVENGC
HCCCHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHCCC
LLRYSITNDLVYVTKSPRRLRSVGD
EEEEEECCCEEEEECCCHHHHCCCC
>Mature Secondary Structure
MKNISALLSDAFAIDVDVVPQPLTTESALSLPPVSKARQGKVSSAEFARMKAKEAQERLI
CCCHHHHHHHHHEEEEECCCCCCCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHH
SNSEQIVLDLALPDWNDLFRGVPNGFLRSGLFTARSKSVREEIKGTRIASLSNFDVHYTG
CCCCEEEEEEECCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCEEEECC
CELRQDDLSAWIALMTRARLQPIGDKIYFVAYSLVKDLGWSLNSASYARLKSCIERLKLT
CCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
SLKIGSKDQKSAYVGSLVRDFAYDELDDKGNVSWMIRVEPGIAKLFVDENTTFLEWEERK
HEECCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCEEEEEECCCCEEEEEHHHH
RLGTRNSLAQWLHGYYSSHTIPIPISIGKLRELCESGQKSLPNFKIRTRQALELLVENGC
HCCCHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHCCC
LLRYSITNDLVYVTKSPRRLRSVGD
EEEEEECCCEEEEECCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 6374158 [H]