Definition | Rhodoferax ferrireducens T118 plasmid1, complete sequence. |
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Accession | NC_007901 |
Length | 257,447 |
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The map label for this gene is trfA [H]
Identifier: 89885774
GI number: 89885774
Start: 45755
End: 46561
Strand: Reverse
Name: trfA [H]
Synonym: Rfer_4287
Alternate gene names: 89885774
Gene position: 46561-45755 (Counterclockwise)
Preceding gene: 89885776
Following gene: 89885773
Centisome position: 18.09
GC content: 50.31
Gene sequence:
>807_bases ATGGCCGTATCGTGCCTTTTCACGGCAGCAAGAGGTGAACGCAAGATTTACGGCAAGTTGACGCCTGTCTACTGTGAGGC CAACCTGGAGGTTTACTTCAAGGGCGAAGAGCTCCGCGAGGATACTGATAAATTGGTCTGGCTGCAGCTCATGCACATGG CCCGAGGTCGCACCTTCAATGAAGAAGACCAAGTCGAGGTTACTTTTACTGCCAATCGATTTTTGAACGATTTGGGATGG GACAACAGCGGGGCTTGTTACAAGAGGCTCTCCGATGCTTTGGACCGTTTACAGAACGCACAAATCAAAGTGATGGGCAA ACGCAATGGCCGCAAGACAGGGTGGATCACAATGTCTTACGTCTCAAACGTTGCGGTGGGACATATAGCAGGCAAGGCCA TGAATAAGGTAGGGCCGAATACTCGGTGGACTGTTCGCATGGATCATTTCGCTGCCCATATGTACCAGGCCGGGATGATC GAGATCAAATCAGACCAGCAGTACAAAGAGTTGCGCACTATGAGTCGGAAAATACTCGACATGGTGCTCGCCTCCCCTAC CGATTTGATCTCAATTCACAGAGACGACTTTATAAAATTCCTCGGGTTGAACCCGACCAACATTAGAAGCGCAAAGCAAA ATATCAAAGTCGCGCTAGAAGAACTGCGGAGCCCTGGATACATCCATCACTTCGCATTTGACGCTGCCAATGTCCTGCAC ATCAATAGGACGGCCGAGGCTCCGATCAATCGGGGCACACCACCCAACATCAGAATTCACAAGGCGCCCGAAATGGAAAA CAACTAA
Upstream 100 bases:
>100_bases GTTTGAGATCAGTTTTCCAGAAACCGCCGCGAATCCAGTCTTGGATGAAGTGGCGGTTTTGCCGTCATGGTCGGAAAACA TACGTGGGTTTCCTGTGCAG
Downstream 100 bases:
>100_bases AAGACTGCCTCTAGAAACGACAAAGGCTCCGATTTGCACTCGGAGCCTTTGAAGTCACCCAAAGGGTGAGACATAACCCA CCGGATCAGGATGGTGTTTG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 268; Mature: 267
Protein sequence:
>268_residues MAVSCLFTAARGERKIYGKLTPVYCEANLEVYFKGEELREDTDKLVWLQLMHMARGRTFNEEDQVEVTFTANRFLNDLGW DNSGACYKRLSDALDRLQNAQIKVMGKRNGRKTGWITMSYVSNVAVGHIAGKAMNKVGPNTRWTVRMDHFAAHMYQAGMI EIKSDQQYKELRTMSRKILDMVLASPTDLISIHRDDFIKFLGLNPTNIRSAKQNIKVALEELRSPGYIHHFAFDAANVLH INRTAEAPINRGTPPNIRIHKAPEMENN
Sequences:
>Translated_268_residues MAVSCLFTAARGERKIYGKLTPVYCEANLEVYFKGEELREDTDKLVWLQLMHMARGRTFNEEDQVEVTFTANRFLNDLGW DNSGACYKRLSDALDRLQNAQIKVMGKRNGRKTGWITMSYVSNVAVGHIAGKAMNKVGPNTRWTVRMDHFAAHMYQAGMI EIKSDQQYKELRTMSRKILDMVLASPTDLISIHRDDFIKFLGLNPTNIRSAKQNIKVALEELRSPGYIHHFAFDAANVLH INRTAEAPINRGTPPNIRIHKAPEMENN >Mature_267_residues AVSCLFTAARGERKIYGKLTPVYCEANLEVYFKGEELREDTDKLVWLQLMHMARGRTFNEEDQVEVTFTANRFLNDLGWD NSGACYKRLSDALDRLQNAQIKVMGKRNGRKTGWITMSYVSNVAVGHIAGKAMNKVGPNTRWTVRMDHFAAHMYQAGMIE IKSDQQYKELRTMSRKILDMVLASPTDLISIHRDDFIKFLGLNPTNIRSAKQNIKVALEELRSPGYIHHFAFDAANVLHI NRTAEAPINRGTPPNIRIHKAPEMENN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010751 [H]
Pfam domain/function: PF07042 TrfA [H]
EC number: NA
Molecular weight: Translated: 30586; Mature: 30454
Theoretical pI: Translated: 9.66; Mature: 9.66
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 4.5 %Met (Translated Protein) 5.6 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 4.1 %Met (Mature Protein) 5.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAVSCLFTAARGERKIYGKLTPVYCEANLEVYFKGEELREDTDKLVWLQLMHMARGRTFN CCEEEEEEECCCCEEEEECCCEEEEECCEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCC EEDQVEVTFTANRFLNDLGWDNSGACYKRLSDALDRLQNAQIKVMGKRNGRKTGWITMSY CCCCEEEEEEHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCEECCEEHHH VSNVAVGHIAGKAMNKVGPNTRWTVRMDHFAAHMYQAGMIEIKSDQQYKELRTMSRKILD HHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHH MVLASPTDLISIHRDDFIKFLGLNPTNIRSAKQNIKVALEELRSPGYIHHFAFDAANVLH HHHCCCHHHEEECHHHHEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEE INRTAEAPINRGTPPNIRIHKAPEMENN EECCCCCCCCCCCCCCEEEEECCCCCCC >Mature Secondary Structure AVSCLFTAARGERKIYGKLTPVYCEANLEVYFKGEELREDTDKLVWLQLMHMARGRTFN CEEEEEEECCCCEEEEECCCEEEEECCEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCC EEDQVEVTFTANRFLNDLGWDNSGACYKRLSDALDRLQNAQIKVMGKRNGRKTGWITMSY CCCCEEEEEEHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCEECCEEHHH VSNVAVGHIAGKAMNKVGPNTRWTVRMDHFAAHMYQAGMIEIKSDQQYKELRTMSRKILD HHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHH MVLASPTDLISIHRDDFIKFLGLNPTNIRSAKQNIKVALEELRSPGYIHHFAFDAANVLH HHHCCCHHHEEECHHHHEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEE INRTAEAPINRGTPPNIRIHKAPEMENN EECCCCCCCCCCCCCCEEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 6374158 [H]