Click here to switch to the map view.

The map label for this gene is pdxS [H]

Identifier: 89256830

GI number: 89256830

Start: 1475407

End: 1476270

Strand: Reverse

Name: pdxS [H]

Synonym: FTL_1546

Alternate gene names: 89256830

Gene position: 1476270-1475407 (Counterclockwise)

Preceding gene: 89256831

Following gene: 89256829

Centisome position: 77.86

GC content: 39.12

Gene sequence:

>864_bases
ATGTCAGATATTAACATAAAGATAGGTTTAGCAGAGATGTTAAAGGGTGGAGTTATCATGGATGTTGTCAACGCTGAACA
AGCAGAGATAGCTCAACAAGCTGGTGCAGTGGCTGTGATGGCTCTTGAGAGAGTCCCTGCTGATATTAGAAAAGATGGCG
GCATAGCTAGAATGTCTGATCCTAAACTTATCAAAGAGATAATGTCCGTAGTTTCAATACCTGTTATGGCAAAAGCTCGA
ATTGGTCATTTTGTCGAAGCACAAATCTTAGAGTCATTGGGTGTTGATTTTATTGATGAGAGTGAGGTTTTAACTCCAGC
TGATGAATTGAATCATATTGATAAAGATAGTTTTAAAGTGCCATTTGTGTGTGGTTGTACAAATCTTGGTGAGGCTTTGC
GAAGAATAGGTGAGGGTGCGGCATTGATTCGTACTAAAGGTGAAGCAGGTACAGGTAATATAGTCGAAGCCGTAAGACAG
CTAAGACAAGTTAACAAAGATATAAACTATATCAAAAATGCCGATAAGTCAGAGCTTATGGCTATAGCAAAAAATCTGCA
AGCACCTTATGATCTAGTCACGTATGTGCATAAAAATGGAAAATTACCAGTGCCAAATTTCTCAGCAGGTGGGGTGGCAA
CTCCAGCCGATGCAGCATTGATGATGCAGTTGGGAGCTGAATCAGTATTTGTTGGATCAGGAATATTTAAGTCTGCAGAT
CCACTTAAGCGAGCTAGAGCAATAGTTAGTGCCGTTACATATTATAATGATGCTAAAATATTAGCTGAAGTTTCTGAAGA
TCTTGGTGAACCTATGACAGGCATTAATTGCGATTTTGAGAAATTTTCACAAAGAGGTTGGTAA

Upstream 100 bases:

>100_bases
ATCATTTTTAAATCTTAACAAAAATTAACTTATCTATAGCACCTAAAAAAATTATAATCCTTTGAGTTGGTTAGTATGAC
AAAAATTAAGGGAGTCAATA

Downstream 100 bases:

>100_bases
TAATGACACAAAAAGTCGGAGTATTAGCAATTCAAGGAGGCTATCAAAAGCATGCTGATATGTTCAAGTCTTTGGGAGTT
GAGGTTAAGCTAGTTAAATT

Product: pyridoxal biosynthesis lyase PdxS

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 287; Mature: 286

Protein sequence:

>287_residues
MSDINIKIGLAEMLKGGVIMDVVNAEQAEIAQQAGAVAVMALERVPADIRKDGGIARMSDPKLIKEIMSVVSIPVMAKAR
IGHFVEAQILESLGVDFIDESEVLTPADELNHIDKDSFKVPFVCGCTNLGEALRRIGEGAALIRTKGEAGTGNIVEAVRQ
LRQVNKDINYIKNADKSELMAIAKNLQAPYDLVTYVHKNGKLPVPNFSAGGVATPADAALMMQLGAESVFVGSGIFKSAD
PLKRARAIVSAVTYYNDAKILAEVSEDLGEPMTGINCDFEKFSQRGW

Sequences:

>Translated_287_residues
MSDINIKIGLAEMLKGGVIMDVVNAEQAEIAQQAGAVAVMALERVPADIRKDGGIARMSDPKLIKEIMSVVSIPVMAKAR
IGHFVEAQILESLGVDFIDESEVLTPADELNHIDKDSFKVPFVCGCTNLGEALRRIGEGAALIRTKGEAGTGNIVEAVRQ
LRQVNKDINYIKNADKSELMAIAKNLQAPYDLVTYVHKNGKLPVPNFSAGGVATPADAALMMQLGAESVFVGSGIFKSAD
PLKRARAIVSAVTYYNDAKILAEVSEDLGEPMTGINCDFEKFSQRGW
>Mature_286_residues
SDINIKIGLAEMLKGGVIMDVVNAEQAEIAQQAGAVAVMALERVPADIRKDGGIARMSDPKLIKEIMSVVSIPVMAKARI
GHFVEAQILESLGVDFIDESEVLTPADELNHIDKDSFKVPFVCGCTNLGEALRRIGEGAALIRTKGEAGTGNIVEAVRQL
RQVNKDINYIKNADKSELMAIAKNLQAPYDLVTYVHKNGKLPVPNFSAGGVATPADAALMMQLGAESVFVGSGIFKSADP
LKRARAIVSAVTYYNDAKILAEVSEDLGEPMTGINCDFEKFSQRGW

Specific function: Involved in the production of pyridoxal phosphate, probably by incorporating ammonia into the pyridine ring [H]

COG id: COG0214

COG function: function code H; Pyridoxine biosynthesis enzyme

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the pdxS/SNZ family [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6321049, Length=298, Percent_Identity=61.744966442953, Blast_Score=357, Evalue=1e-99,
Organism=Saccharomyces cerevisiae, GI6323996, Length=298, Percent_Identity=61.4093959731544, Blast_Score=357, Evalue=2e-99,
Organism=Saccharomyces cerevisiae, GI6323743, Length=293, Percent_Identity=59.3856655290102, Blast_Score=352, Evalue=3e-98,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR011060
- InterPro:   IPR001852 [H]

Pfam domain/function: PF01680 SOR_SNZ [H]

EC number: NA

Molecular weight: Translated: 30819; Mature: 30688

Theoretical pI: Translated: 4.94; Mature: 4.94

Prosite motif: PS01235 PDXS_SNZ_1 ; PS51129 PDXS_SNZ_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDINIKIGLAEMLKGGVIMDVVNAEQAEIAQQAGAVAVMALERVPADIRKDGGIARMSD
CCCCEEEEEHHHHHCCCEEEEECCCHHHHHHHHHCHHHHHHHHHCCHHHHCCCCCCCCCC
PKLIKEIMSVVSIPVMAKARIGHFVEAQILESLGVDFIDESEVLTPADELNHIDKDSFKV
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCCCCCC
PFVCGCTNLGEALRRIGEGAALIRTKGEAGTGNIVEAVRQLRQVNKDINYIKNADKSELM
CEEECCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHH
AIAKNLQAPYDLVTYVHKNGKLPVPNFSAGGVATPADAALMMQLGAESVFVGSGIFKSAD
HHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEECCCCCCCCC
PLKRARAIVSAVTYYNDAKILAEVSEDLGEPMTGINCDFEKFSQRGW
HHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCHHHHHCCCC
>Mature Secondary Structure 
SDINIKIGLAEMLKGGVIMDVVNAEQAEIAQQAGAVAVMALERVPADIRKDGGIARMSD
CCCEEEEEHHHHHCCCEEEEECCCHHHHHHHHHCHHHHHHHHHCCHHHHCCCCCCCCCC
PKLIKEIMSVVSIPVMAKARIGHFVEAQILESLGVDFIDESEVLTPADELNHIDKDSFKV
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCCCCCC
PFVCGCTNLGEALRRIGEGAALIRTKGEAGTGNIVEAVRQLRQVNKDINYIKNADKSELM
CEEECCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHH
AIAKNLQAPYDLVTYVHKNGKLPVPNFSAGGVATPADAALMMQLGAESVFVGSGIFKSAD
HHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEECCCCCCCCC
PLKRARAIVSAVTYYNDAKILAEVSEDLGEPMTGINCDFEKFSQRGW
HHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA