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The map label for this gene is secD [H]

Identifier: 89256208

GI number: 89256208

Start: 829073

End: 831010

Strand: Direct

Name: secD [H]

Synonym: FTL_0848

Alternate gene names: 89256208

Gene position: 829073-831010 (Clockwise)

Preceding gene: 89256207

Following gene: 89256209

Centisome position: 43.73

GC content: 35.19

Gene sequence:

>1938_bases
ATGAGTAACAACAGAAGTTTACCTATAAATCAGTTTCCGCTGTGGAAAAATCTTTTGATCGTAATTATCTTAGCATTAGC
AATTTTTTATGCTTTGCCTAATGTTTTTGGTAAGAGCCCAGCTTTGCAAATATCACAAAAAGATGGTGATGTGACTACAC
AGTTATTAGTAAGTGTAGAGAACACGCTAGCTAAAGATAAAATTAGTTATCAAAAAGCTGATATAGCTGATGACAAAAGT
AATATTGCAATAACTTTCAAGGATGTCGAAGAGCAGCTAAAAGCTAAAAAAGTACTAAAAGACAGTTTGAGCGATGACTA
TATTATTGCGATGAGTATGCTCTCGAACTCACCAAATTGGTTATCAGCATTAGGTGCTAACCCTATGAATTTGGGACTAG
ATTTGCGTGGTGGGATGTACTTGATGTTAGAAGCTGATACAAAAACATCTATTGATGCTCAACTAGATAATTCCTTGAGC
ATAATTCTAAGTGCTGCTAAGGATAATAGTATAAATATATCAAGCTTAACAAAAGCTGAAGAAAAATCAACTATCAAAGC
ACCACAAAATTATTTTGACAATGGTTTTGTTTCGATAACTTTAGCAAATTCTGTTGATGTTGATAAGCTTAAACAATATT
TAAGTACTGATTTCATCAAGACACAAGACCCTAATATAATTTACACAAACAAGGGTAATACTGTATTTATTTCTTATAAT
AGTGCTAAGATTCTTCAGCTTAAGCAAGATGCGATATCGCAGGTTGTGACAGTTATGCGTAATCGTATCAACGCATTAGG
TGTAGCTGAAGTATCTGTTGCTCAGGCAGGTGATAATCGTGTAGTGATTGAAATACCAGGCTTACAAGATGCTACCCAAG
CTAAGCAAATTTTAGGTGGTACTTCTACAGCAAGTTTCTATTTAGTAAATCCAGTTGCAGATAGATTAGCAGCTGAAGAG
CAAGGTTATAAAGTTTATTCTCTAGATAATGGTCGAGGCTATCAAAGCTACTATAGCTTAAAAGGAACTGCTGTTGCTGG
TGGTGCTGATATTATCGGAGCTAGCCCATCTATAGATCGTCAGACTGGAGCACCTATAGTCATGGTTGAGCTAGATAGAA
GTGCAGCAAGCCATTTTAGACAAATAACTGGTAAGAATATTGGTAACCCAATGGGTGTAATGCTTGTTAATACCACTTAC
GAGAAAGTCAAAGATAAAGATGGTAAAGAGAAAAATGTAGTTAGCAAAACAGAAAAATTAATCAATGTTGCTACAATCCA
ATCTGCGTTAGGCTCACAATTTCAGATCACTGGTCTAAATCAAAAAGAAGCAAATAATCTAGCTTTAATGATCAAATCAG
GAGCGTTGCAGGTACCTGTACATATCGTCCAAGAGCAGCAAATAGGTCCAAGCTTAGGTAAGGATAATATTGGAAAAGGT
ATGCTCTCTATCGTGATAGCACTTATAGCTGTTGTAGTATTTATCTTAGTTTATTATCATGTTTTCGGTATTATAGCTAA
CATTGCGCTAGTGATGAACTTAATCTTAATTGTAGCGGTGATGTCTATTATCCCTGGAGCTACTCTGACATTACCAGGTA
TTGCTGGTATCGTCTTAAATTTAGGTATGTCGATAGATGGTAACGTGCTAATATTTGAACGTATTAGAGAAGAAATTCGT
GCTGGTATGCCTCGTCAAAGTGCAATACATATTGGTTATGAGAAAGCATTTACTACAATTGTAGATTCAAATATTACAAC
CTTGATTGTTGCGGTGATACTTTTCTTTATCGGTAGTGGCGCAGTCAAAGGTTTTGCAATCACATTAATGATAGGTATTG
TCACATCTATGTTTACATCTGTTACTGTTTCAAGAGCGATGACAAATTTTGTTTACGGTAAGAGAAAGAAACTAGAAAAA
ATCTCTATAGGCATATAA

Upstream 100 bases:

>100_bases
ATGCTGTAGCAAATATTTTACCTAAAGGTGCTACTAAAGCTTAATTAGCTATTCTACGAAATCTTTTTAATTTTTTTCTT
TTTATTTAAAGGAATTTTCA

Downstream 100 bases:

>100_bases
TTTTAGGTTGGGTTTATAATGGAATTTTTTAAACAAAAGACAAGCATAGATTTTTTAGGAATTAAGAAATATACAACTGT
TTTTTCTGTATTAATGATTG

Product: preprotein translocase subunit SecD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 645; Mature: 644

Protein sequence:

>645_residues
MSNNRSLPINQFPLWKNLLIVIILALAIFYALPNVFGKSPALQISQKDGDVTTQLLVSVENTLAKDKISYQKADIADDKS
NIAITFKDVEEQLKAKKVLKDSLSDDYIIAMSMLSNSPNWLSALGANPMNLGLDLRGGMYLMLEADTKTSIDAQLDNSLS
IILSAAKDNSINISSLTKAEEKSTIKAPQNYFDNGFVSITLANSVDVDKLKQYLSTDFIKTQDPNIIYTNKGNTVFISYN
SAKILQLKQDAISQVVTVMRNRINALGVAEVSVAQAGDNRVVIEIPGLQDATQAKQILGGTSTASFYLVNPVADRLAAEE
QGYKVYSLDNGRGYQSYYSLKGTAVAGGADIIGASPSIDRQTGAPIVMVELDRSAASHFRQITGKNIGNPMGVMLVNTTY
EKVKDKDGKEKNVVSKTEKLINVATIQSALGSQFQITGLNQKEANNLALMIKSGALQVPVHIVQEQQIGPSLGKDNIGKG
MLSIVIALIAVVVFILVYYHVFGIIANIALVMNLILIVAVMSIIPGATLTLPGIAGIVLNLGMSIDGNVLIFERIREEIR
AGMPRQSAIHIGYEKAFTTIVDSNITTLIVAVILFFIGSGAVKGFAITLMIGIVTSMFTSVTVSRAMTNFVYGKRKKLEK
ISIGI

Sequences:

>Translated_645_residues
MSNNRSLPINQFPLWKNLLIVIILALAIFYALPNVFGKSPALQISQKDGDVTTQLLVSVENTLAKDKISYQKADIADDKS
NIAITFKDVEEQLKAKKVLKDSLSDDYIIAMSMLSNSPNWLSALGANPMNLGLDLRGGMYLMLEADTKTSIDAQLDNSLS
IILSAAKDNSINISSLTKAEEKSTIKAPQNYFDNGFVSITLANSVDVDKLKQYLSTDFIKTQDPNIIYTNKGNTVFISYN
SAKILQLKQDAISQVVTVMRNRINALGVAEVSVAQAGDNRVVIEIPGLQDATQAKQILGGTSTASFYLVNPVADRLAAEE
QGYKVYSLDNGRGYQSYYSLKGTAVAGGADIIGASPSIDRQTGAPIVMVELDRSAASHFRQITGKNIGNPMGVMLVNTTY
EKVKDKDGKEKNVVSKTEKLINVATIQSALGSQFQITGLNQKEANNLALMIKSGALQVPVHIVQEQQIGPSLGKDNIGKG
MLSIVIALIAVVVFILVYYHVFGIIANIALVMNLILIVAVMSIIPGATLTLPGIAGIVLNLGMSIDGNVLIFERIREEIR
AGMPRQSAIHIGYEKAFTTIVDSNITTLIVAVILFFIGSGAVKGFAITLMIGIVTSMFTSVTVSRAMTNFVYGKRKKLEK
ISIGI
>Mature_644_residues
SNNRSLPINQFPLWKNLLIVIILALAIFYALPNVFGKSPALQISQKDGDVTTQLLVSVENTLAKDKISYQKADIADDKSN
IAITFKDVEEQLKAKKVLKDSLSDDYIIAMSMLSNSPNWLSALGANPMNLGLDLRGGMYLMLEADTKTSIDAQLDNSLSI
ILSAAKDNSINISSLTKAEEKSTIKAPQNYFDNGFVSITLANSVDVDKLKQYLSTDFIKTQDPNIIYTNKGNTVFISYNS
AKILQLKQDAISQVVTVMRNRINALGVAEVSVAQAGDNRVVIEIPGLQDATQAKQILGGTSTASFYLVNPVADRLAAEEQ
GYKVYSLDNGRGYQSYYSLKGTAVAGGADIIGASPSIDRQTGAPIVMVELDRSAASHFRQITGKNIGNPMGVMLVNTTYE
KVKDKDGKEKNVVSKTEKLINVATIQSALGSQFQITGLNQKEANNLALMIKSGALQVPVHIVQEQQIGPSLGKDNIGKGM
LSIVIALIAVVVFILVYYHVFGIIANIALVMNLILIVAVMSIIPGATLTLPGIAGIVLNLGMSIDGNVLIFERIREEIRA
GMPRQSAIHIGYEKAFTTIVDSNITTLIVAVILFFIGSGAVKGFAITLMIGIVTSMFTSVTVSRAMTNFVYGKRKKLEKI
SIGI

Specific function: Involved in protein export [H]

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786609, Length=639, Percent_Identity=38.1846635367762, Blast_Score=442, Evalue=1e-125,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001036
- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 69656; Mature: 69525

Theoretical pI: Translated: 9.43; Mature: 9.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNNRSLPINQFPLWKNLLIVIILALAIFYALPNVFGKSPALQISQKDGDVTTQLLVSVE
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHH
NTLAKDKISYQKADIADDKSNIAITFKDVEEQLKAKKVLKDSLSDDYIIAMSMLSNSPNW
HHHHHHHHHHHHCCCCCCCCCEEEEEHHHHHHHHHHHHHHHCCCCCEEEEEHHHCCCCCH
LSALGANPMNLGLDLRGGMYLMLEADTKTSIDAQLDNSLSIILSAAKDNSINISSLTKAE
HHHHCCCCCEECEEECCCEEEEEECCCCCCCCHHCCCCEEEEEEECCCCCCCHHHHHHHH
EKSTIKAPQNYFDNGFVSITLANSVDVDKLKQYLSTDFIKTQDPNIIYTNKGNTVFISYN
HHHHHCCCHHHCCCCEEEEEEECCCCHHHHHHHHHHCCEECCCCCEEEECCCCEEEEEEC
SAKILQLKQDAISQVVTVMRNRINALGVAEVSVAQAGDNRVVIEIPGLQDATQAKQILGG
CCEEEEEHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCEEEEEECCCCCHHHHHHHHCC
TSTASFYLVNPVADRLAAEEQGYKVYSLDNGRGYQSYYSLKGTAVAGGADIIGASPSIDR
CCCCEEEEECHHHHHHHHHHCCCEEEEECCCCCCCCEEEECCEEEECCCCEECCCCCCCC
QTGAPIVMVELDRSAASHFRQITGKNIGNPMGVMLVNTTYEKVKDKDGKEKNVVSKTEKL
CCCCCEEEEEECHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHCCCCCHHHHHHHHHHH
INVATIQSALGSQFQITGLNQKEANNLALMIKSGALQVPVHIVQEQQIGPSLGKDNIGKG
HHHHHHHHHHCCEEEEECCCCCCCCCEEEEEECCCEECCHHEEEHHHCCCCCCCCCCCHH
MLSIVIALIAVVVFILVYYHVFGIIANIALVMNLILIVAVMSIIPGATLTLPGIAGIVLN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCHHHHHHHH
LGMSIDGNVLIFERIREEIRAGMPRQSAIHIGYEKAFTTIVDSNITTLIVAVILFFIGSG
CCCCCCCCEEEHHHHHHHHHHCCCCCCEEEECHHHHHHHHHCCCHHHHHHHHHHHHHCCC
AVKGFAITLMIGIVTSMFTSVTVSRAMTNFVYGKRKKLEKISIGI
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SNNRSLPINQFPLWKNLLIVIILALAIFYALPNVFGKSPALQISQKDGDVTTQLLVSVE
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHH
NTLAKDKISYQKADIADDKSNIAITFKDVEEQLKAKKVLKDSLSDDYIIAMSMLSNSPNW
HHHHHHHHHHHHCCCCCCCCCEEEEEHHHHHHHHHHHHHHHCCCCCEEEEEHHHCCCCCH
LSALGANPMNLGLDLRGGMYLMLEADTKTSIDAQLDNSLSIILSAAKDNSINISSLTKAE
HHHHCCCCCEECEEECCCEEEEEECCCCCCCCHHCCCCEEEEEEECCCCCCCHHHHHHHH
EKSTIKAPQNYFDNGFVSITLANSVDVDKLKQYLSTDFIKTQDPNIIYTNKGNTVFISYN
HHHHHCCCHHHCCCCEEEEEEECCCCHHHHHHHHHHCCEECCCCCEEEECCCCEEEEEEC
SAKILQLKQDAISQVVTVMRNRINALGVAEVSVAQAGDNRVVIEIPGLQDATQAKQILGG
CCEEEEEHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCEEEEEECCCCCHHHHHHHHCC
TSTASFYLVNPVADRLAAEEQGYKVYSLDNGRGYQSYYSLKGTAVAGGADIIGASPSIDR
CCCCEEEEECHHHHHHHHHHCCCEEEEECCCCCCCCEEEECCEEEECCCCEECCCCCCCC
QTGAPIVMVELDRSAASHFRQITGKNIGNPMGVMLVNTTYEKVKDKDGKEKNVVSKTEKL
CCCCCEEEEEECHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHCCCCCHHHHHHHHHHH
INVATIQSALGSQFQITGLNQKEANNLALMIKSGALQVPVHIVQEQQIGPSLGKDNIGKG
HHHHHHHHHHCCEEEEECCCCCCCCCEEEEEECCCEECCHHEEEHHHCCCCCCCCCCCHH
MLSIVIALIAVVVFILVYYHVFGIIANIALVMNLILIVAVMSIIPGATLTLPGIAGIVLN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCHHHHHHHH
LGMSIDGNVLIFERIREEIRAGMPRQSAIHIGYEKAFTTIVDSNITTLIVAVILFFIGSG
CCCCCCCCEEEHHHHHHHHHHCCCCCCEEEECHHHHHHHHHCCCHHHHHHHHHHHHHCCC
AVKGFAITLMIGIVTSMFTSVTVSRAMTNFVYGKRKKLEKISIGI
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]