BacMap

Definition	Francisella tularensis subsp. holarctica LVS chromosome, complete genome.
Accession	NC_007880
Length	1,895,994

Click here to switch to the map view.

The map label for this gene is ydfG [C]

Identifier: 89256130

GI number: 89256130

Start: 732901

End: 733623

Strand: Direct

Name: ydfG [C]

Synonym: FTL_0743

Alternate gene names: 89256130

Gene position: 732901-733623 (Clockwise)

Preceding gene: 89256128

Following gene: 89256131

Centisome position: 38.66

GC content: 37.07

Gene sequence:

>723_bases
ATGGCTAAATCGTTAGTAGTAATCACTGGAGCAAGTTCAGGAATTGGTGCAGCTATTGCAAAACGTTTTTCTGAAGCAGG
GCATTCACTTTTATTAGTTGGTAGAAGAGTAGAGAAAATTGAAGAATTAAATCTACCAAATACACTGATCCGTAAAGTTG
ATGTAACAGATGCACATGCTTTAAAAAATGCAATAAAAGAAGCAGAAGCACAGTATGGACCTGTAGATTGTCTAGTAAAT
AATGCAGGGCTAATGCTACTTGGTCAAATTGATACCCAAGATCCGATTGAGTGGCAAAAAATGTATGATGTGAATGTATT
GGCATTGCTTAATGGAATGCAGGCAGTACTCGCTGATATGAGATCTAGAAAAACTGGGACAATTATTAATATAAGCTCGA
TTGCTGGTAAAAAGTCATTTGCCAACCATGCAGCATATGTTGGGACAAAATTTGCAGTTTCTTCGATAAGTGAGAATGTT
CGCGAAGAGGTTGCTAATGATAATGTAAGAATTATGACAATTTGTCCAGGTGCGGTTGAAACTGAGCTTCTAAGCCATAC
TACTTCAGAAAAAATAAAAGAAGATTATCAAAGCTGGAAAGAATCTATGGGAGGAGTACTAGCAGCAGATGATATTGCAC
GCACAGCGATGTTTATGTATAGTCAACCACAAAATATAAATATTCGTGAGGTTGTGATTGCAGCAACTAAACAACCTGCA
TAG

Upstream 100 bases:

>100_bases
TTTTATGATTGTTGGTATTTATCAGTTTAATAAGTTTGTATAGAATTTACAACCAATGAAGTTATGTAAAAATCAAAACA
AAAAATAAAGGAGAAAAAAT

Downstream 100 bases:

>100_bases
TAATTACATTTGCTATTTACTTAAGTGCTATTCTGAAAAATAAAGTTTGAAAGTAGTCTAAATTACTAATCACCTTAAAG
GTATGTTAAAATTCTAAATT

Product: oxidoreductase, short-chain dehydrogenase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 240; Mature: 239

Protein sequence:

>240_residues
MAKSLVVITGASSGIGAAIAKRFSEAGHSLLLVGRRVEKIEELNLPNTLIRKVDVTDAHALKNAIKEAEAQYGPVDCLVN
NAGLMLLGQIDTQDPIEWQKMYDVNVLALLNGMQAVLADMRSRKTGTIINISSIAGKKSFANHAAYVGTKFAVSSISENV
REEVANDNVRIMTICPGAVETELLSHTTSEKIKEDYQSWKESMGGVLAADDIARTAMFMYSQPQNINIREVVIAATKQPA

Sequences:

>Translated_240_residues
MAKSLVVITGASSGIGAAIAKRFSEAGHSLLLVGRRVEKIEELNLPNTLIRKVDVTDAHALKNAIKEAEAQYGPVDCLVN
NAGLMLLGQIDTQDPIEWQKMYDVNVLALLNGMQAVLADMRSRKTGTIINISSIAGKKSFANHAAYVGTKFAVSSISENV
REEVANDNVRIMTICPGAVETELLSHTTSEKIKEDYQSWKESMGGVLAADDIARTAMFMYSQPQNINIREVVIAATKQPA
>Mature_239_residues
AKSLVVITGASSGIGAAIAKRFSEAGHSLLLVGRRVEKIEELNLPNTLIRKVDVTDAHALKNAIKEAEAQYGPVDCLVNN
AGLMLLGQIDTQDPIEWQKMYDVNVLALLNGMQAVLADMRSRKTGTIINISSIAGKKSFANHAAYVGTKFAVSSISENVR
EEVANDNVRIMTICPGAVETELLSHTTSEKIKEDYQSWKESMGGVLAADDIARTAMFMYSQPQNINIREVVIAATKQPA

Specific function: Unknown

COG id: COG4221

COG function: function code R; Short-chain alcohol dehydrogenase of unknown specificity

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI109715829, Length=251, Percent_Identity=31.0756972111554, Blast_Score=110, Evalue=1e-24,
Organism=Homo sapiens, GI4503817, Length=209, Percent_Identity=33.0143540669856, Blast_Score=98, Evalue=6e-21,
Organism=Homo sapiens, GI20149619, Length=193, Percent_Identity=35.2331606217617, Blast_Score=94, Evalue=9e-20,
Organism=Homo sapiens, GI7706318, Length=200, Percent_Identity=30, Blast_Score=88, Evalue=6e-18,
Organism=Homo sapiens, GI31542939, Length=210, Percent_Identity=27.1428571428571, Blast_Score=81, Evalue=1e-15,
Organism=Homo sapiens, GI157739938, Length=209, Percent_Identity=29.1866028708134, Blast_Score=80, Evalue=1e-15,
Organism=Homo sapiens, GI40254992, Length=222, Percent_Identity=26.5765765765766, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI4758504, Length=218, Percent_Identity=29.3577981651376, Blast_Score=78, Evalue=6e-15,
Organism=Homo sapiens, GI4557649, Length=224, Percent_Identity=29.9107142857143, Blast_Score=75, Evalue=5e-14,
Organism=Homo sapiens, GI142976729, Length=197, Percent_Identity=29.4416243654822, Blast_Score=75, Evalue=7e-14,
Organism=Homo sapiens, GI7657478, Length=192, Percent_Identity=29.1666666666667, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI223718074, Length=196, Percent_Identity=30.1020408163265, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI32483357, Length=251, Percent_Identity=23.9043824701195, Blast_Score=72, Evalue=5e-13,
Organism=Homo sapiens, GI7705925, Length=224, Percent_Identity=25.4464285714286, Blast_Score=71, Evalue=8e-13,
Organism=Homo sapiens, GI19743808, Length=215, Percent_Identity=28.8372093023256, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI66933014, Length=206, Percent_Identity=26.2135922330097, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI166795268, Length=204, Percent_Identity=27.4509803921569, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI19923817, Length=210, Percent_Identity=23.3333333333333, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI40807363, Length=203, Percent_Identity=29.064039408867, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI50726952, Length=200, Percent_Identity=26, Blast_Score=66, Evalue=3e-11,
Organism=Escherichia coli, GI1787820, Length=232, Percent_Identity=31.8965517241379, Blast_Score=108, Evalue=2e-25,
Organism=Escherichia coli, GI87082100, Length=198, Percent_Identity=33.3333333333333, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI1786812, Length=237, Percent_Identity=26.1603375527426, Blast_Score=80, Evalue=9e-17,
Organism=Escherichia coli, GI1790717, Length=206, Percent_Identity=27.6699029126214, Blast_Score=77, Evalue=8e-16,
Organism=Escherichia coli, GI1787335, Length=182, Percent_Identity=26.9230769230769, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI87082160, Length=189, Percent_Identity=28.5714285714286, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1787526, Length=191, Percent_Identity=27.2251308900524, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1787905, Length=225, Percent_Identity=28.4444444444444, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI1786701, Length=201, Percent_Identity=26.865671641791, Blast_Score=67, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI71994604, Length=243, Percent_Identity=27.9835390946502, Blast_Score=96, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI71994600, Length=244, Percent_Identity=26.2295081967213, Blast_Score=93, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI17560150, Length=233, Percent_Identity=30.9012875536481, Blast_Score=88, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI17562990, Length=233, Percent_Identity=29.6137339055794, Blast_Score=81, Evalue=5e-16,
Organism=Caenorhabditis elegans, GI72000259, Length=233, Percent_Identity=27.4678111587983, Blast_Score=79, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI17563726, Length=242, Percent_Identity=27.2727272727273, Blast_Score=78, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI17560332, Length=237, Percent_Identity=27.8481012658228, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17508895, Length=191, Percent_Identity=28.7958115183246, Blast_Score=74, Evalue=9e-14,
Organism=Caenorhabditis elegans, GI17562904, Length=235, Percent_Identity=28.0851063829787, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17544670, Length=241, Percent_Identity=28.2157676348548, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17538182, Length=215, Percent_Identity=27.4418604651163, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17561402, Length=243, Percent_Identity=27.1604938271605, Blast_Score=70, Evalue=8e-13,
Organism=Caenorhabditis elegans, GI17555612, Length=210, Percent_Identity=30.952380952381, Blast_Score=70, Evalue=9e-13,
Organism=Caenorhabditis elegans, GI17551412, Length=218, Percent_Identity=26.1467889908257, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI115534694, Length=223, Percent_Identity=26.457399103139, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI193204405, Length=216, Percent_Identity=27.3148148148148, Blast_Score=68, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI71997402, Length=188, Percent_Identity=29.7872340425532, Blast_Score=67, Evalue=7e-12,
Organism=Caenorhabditis elegans, GI17559104, Length=242, Percent_Identity=26.8595041322314, Blast_Score=67, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI17560676, Length=240, Percent_Identity=25.8333333333333, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI212646214, Length=221, Percent_Identity=24.8868778280543, Blast_Score=66, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI71982365, Length=188, Percent_Identity=26.5957446808511, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17555706, Length=193, Percent_Identity=25.3886010362694, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17570069, Length=188, Percent_Identity=29.7872340425532, Blast_Score=65, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17567345, Length=189, Percent_Identity=25.3968253968254, Blast_Score=64, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI17562910, Length=222, Percent_Identity=24.3243243243243, Blast_Score=64, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI17565030, Length=191, Percent_Identity=26.7015706806283, Blast_Score=64, Evalue=6e-11,
Organism=Saccharomyces cerevisiae, GI6323882, Length=255, Percent_Identity=36.4705882352941, Blast_Score=145, Evalue=4e-36,
Organism=Saccharomyces cerevisiae, GI6322227, Length=193, Percent_Identity=26.9430051813472, Blast_Score=77, Evalue=3e-15,
Organism=Saccharomyces cerevisiae, GI6322067, Length=188, Percent_Identity=28.1914893617021, Blast_Score=65, Evalue=7e-12,
Organism=Drosophila melanogaster, GI116007236, Length=250, Percent_Identity=30.4, Blast_Score=110, Evalue=7e-25,
Organism=Drosophila melanogaster, GI24641232, Length=244, Percent_Identity=29.5081967213115, Blast_Score=103, Evalue=1e-22,
Organism=Drosophila melanogaster, GI28571387, Length=247, Percent_Identity=30.3643724696356, Blast_Score=100, Evalue=1e-21,
Organism=Drosophila melanogaster, GI23397609, Length=232, Percent_Identity=32.3275862068966, Blast_Score=97, Evalue=9e-21,
Organism=Drosophila melanogaster, GI24643142, Length=193, Percent_Identity=29.0155440414508, Blast_Score=94, Evalue=5e-20,
Organism=Drosophila melanogaster, GI21358495, Length=190, Percent_Identity=30, Blast_Score=94, Evalue=1e-19,
Organism=Drosophila melanogaster, GI24641388, Length=251, Percent_Identity=29.4820717131474, Blast_Score=93, Evalue=2e-19,
Organism=Drosophila melanogaster, GI281364494, Length=248, Percent_Identity=29.4354838709677, Blast_Score=92, Evalue=3e-19,
Organism=Drosophila melanogaster, GI24644339, Length=208, Percent_Identity=31.25, Blast_Score=91, Evalue=5e-19,
Organism=Drosophila melanogaster, GI24648944, Length=247, Percent_Identity=26.3157894736842, Blast_Score=91, Evalue=6e-19,
Organism=Drosophila melanogaster, GI281364892, Length=193, Percent_Identity=32.1243523316062, Blast_Score=89, Evalue=3e-18,
Organism=Drosophila melanogaster, GI21357041, Length=187, Percent_Identity=31.5508021390374, Blast_Score=88, Evalue=5e-18,
Organism=Drosophila melanogaster, GI28571526, Length=204, Percent_Identity=29.4117647058824, Blast_Score=87, Evalue=9e-18,
Organism=Drosophila melanogaster, GI116007238, Length=222, Percent_Identity=29.2792792792793, Blast_Score=86, Evalue=3e-17,
Organism=Drosophila melanogaster, GI24663911, Length=247, Percent_Identity=26.7206477732794, Blast_Score=84, Evalue=1e-16,
Organism=Drosophila melanogaster, GI21355319, Length=243, Percent_Identity=25.5144032921811, Blast_Score=82, Evalue=2e-16,
Organism=Drosophila melanogaster, GI116007234, Length=250, Percent_Identity=28.4, Blast_Score=82, Evalue=3e-16,
Organism=Drosophila melanogaster, GI24640492, Length=190, Percent_Identity=30, Blast_Score=81, Evalue=6e-16,
Organism=Drosophila melanogaster, GI24648693, Length=246, Percent_Identity=26.4227642276423, Blast_Score=78, Evalue=6e-15,
Organism=Drosophila melanogaster, GI21355889, Length=246, Percent_Identity=26.4227642276423, Blast_Score=78, Evalue=6e-15,
Organism=Drosophila melanogaster, GI24639444, Length=244, Percent_Identity=27.4590163934426, Blast_Score=77, Evalue=7e-15,
Organism=Drosophila melanogaster, GI161076933, Length=232, Percent_Identity=27.1551724137931, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24584748, Length=232, Percent_Identity=27.1551724137931, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24649181, Length=201, Percent_Identity=27.363184079602, Blast_Score=67, Evalue=9e-12,

Paralogues:

None

Copy number: 1300 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 25988; Mature: 25857

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKSLVVITGASSGIGAAIAKRFSEAGHSLLLVGRRVEKIEELNLPNTLIRKVDVTDAHA
CCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCCHHHHHHCCCCHHHH
LKNAIKEAEAQYGPVDCLVNNAGLMLLGQIDTQDPIEWQKMYDVNVLALLNGMQAVLADM
HHHHHHHHHHCCCCHHEEECCCCEEEEECCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHH
RSRKTGTIINISSIAGKKSFANHAAYVGTKFAVSSISENVREEVANDNVRIMTICPGAVE
HCCCCCCEEEEHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHH
TELLSHTTSEKIKEDYQSWKESMGGVLAADDIARTAMFMYSQPQNINIREVVIAATKQPA
HHHHHHHHHHHHHHHHHHHHHHHCCEEEHHHHHHHHHHHHCCCCCCCHHHEEEEECCCCC
>Mature Secondary Structure 
AKSLVVITGASSGIGAAIAKRFSEAGHSLLLVGRRVEKIEELNLPNTLIRKVDVTDAHA
CCCEEEEECCCCCHHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCCHHHHHHCCCCHHHH
LKNAIKEAEAQYGPVDCLVNNAGLMLLGQIDTQDPIEWQKMYDVNVLALLNGMQAVLADM
HHHHHHHHHHCCCCHHEEECCCCEEEEECCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHH
RSRKTGTIINISSIAGKKSFANHAAYVGTKFAVSSISENVREEVANDNVRIMTICPGAVE
HCCCCCCEEEEHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHH
TELLSHTTSEKIKEDYQSWKESMGGVLAADDIARTAMFMYSQPQNINIREVVIAATKQPA
HHHHHHHHHHHHHHHHHHHHHHHCCEEEHHHHHHHHHHHHCCCCCCCHHHEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA