Click here to switch to the map view.

The map label for this gene is yafC [C]

Identifier: 89256129

GI number: 89256129

Start: 731886

End: 732344

Strand: Reverse

Name: yafC [C]

Synonym: FTL_0742

Alternate gene names: 89256129

Gene position: 732344-731886 (Counterclockwise)

Preceding gene: 89256139

Following gene: 89256126

Centisome position: 38.63

GC content: 32.46

Gene sequence:

>459_bases
ATGGGCAATCTGGTAGATTCTAACCTTATAGTTTCGCCTTTACGTACTGTTGCTACCAAATATGTTGCTAGTCATGATTT
TATTCAAAAGCATGGGCAAGTAACCAATCCTCGTCAGCTCGAAAACTTACCACTAATTTATGGTAGTGTCAAACGGTGGT
CATTAATCTCAAATAAAGATAAATATACTCTACATATTCATAATAATGGCATTCATGTCACCAGTGGTAGAGTTATGAAG
CAGGCTGCATTAGCAGGATTAGGGATTACTCGACTTGTAGATATTTATGTAGAGTCTGATATCAAAAATGGAAATTTAGT
CGAAGTCTTGTCAGATTATACTGAAACCACTCCATTATCTATTATTTCGCTGCCAGTCAAATATCAACTTAAAAGAATAA
ATTCATTAATAAAATATCTAAAACAACATTTTAACGAATTATATTTAGAAATGCTTTAA

Upstream 100 bases:

>100_bases
GCTCAACTTCCAGCAACAGAATCCTAAAGTTAATATCCATTTAGATTTCTCTAGTCACAAGGTCAATCTTTTGGATAGTG
ATTACGACTTAGTAATACGT

Downstream 100 bases:

>100_bases
TATAAAATAATTACTTACTGTAGTAATATTGATAAAGAATCTTATCATAACGAATTGTTATTTTTTTAAAATTTCTTATG
ACTTGCTGTTTGGTATGATC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator; Transcriptional Regulator LysR Family

Number of amino acids: Translated: 152; Mature: 151

Protein sequence:

>152_residues
MGNLVDSNLIVSPLRTVATKYVASHDFIQKHGQVTNPRQLENLPLIYGSVKRWSLISNKDKYTLHIHNNGIHVTSGRVMK
QAALAGLGITRLVDIYVESDIKNGNLVEVLSDYTETTPLSIISLPVKYQLKRINSLIKYLKQHFNELYLEML

Sequences:

>Translated_152_residues
MGNLVDSNLIVSPLRTVATKYVASHDFIQKHGQVTNPRQLENLPLIYGSVKRWSLISNKDKYTLHIHNNGIHVTSGRVMK
QAALAGLGITRLVDIYVESDIKNGNLVEVLSDYTETTPLSIISLPVKYQLKRINSLIKYLKQHFNELYLEML
>Mature_151_residues
GNLVDSNLIVSPLRTVATKYVASHDFIQKHGQVTNPRQLENLPLIYGSVKRWSLISNKDKYTLHIHNNGIHVTSGRVMKQ
AALAGLGITRLVDIYVESDIKNGNLVEVLSDYTETTPLSIISLPVKYQLKRINSLIKYLKQHFNELYLEML

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 17245; Mature: 17114

Theoretical pI: Translated: 9.86; Mature: 9.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGNLVDSNLIVSPLRTVATKYVASHDFIQKHGQVTNPRQLENLPLIYGSVKRWSLISNKD
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCEEECCCHHHHEECCCC
KYTLHIHNNGIHVTSGRVMKQAALAGLGITRLVDIYVESDIKNGNLVEVLSDYTETTPLS
CEEEEEECCCEEEECCHHHHHHHHHCCCHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCEE
IISLPVKYQLKRINSLIKYLKQHFNELYLEML
EEECCHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
GNLVDSNLIVSPLRTVATKYVASHDFIQKHGQVTNPRQLENLPLIYGSVKRWSLISNKD
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCEEECCCHHHHEECCCC
KYTLHIHNNGIHVTSGRVMKQAALAGLGITRLVDIYVESDIKNGNLVEVLSDYTETTPLS
CEEEEEECCCEEEECCHHHHHHHHHCCCHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCEE
IISLPVKYQLKRINSLIKYLKQHFNELYLEML
EEECCHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA