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The map label for this gene is ycfH [C]

Identifier: 89256015

GI number: 89256015

Start: 609798

End: 610565

Strand: Direct

Name: ycfH [C]

Synonym: FTL_0620

Alternate gene names: 89256015

Gene position: 609798-610565 (Clockwise)

Preceding gene: 89256013

Following gene: 89256017

Centisome position: 32.16

GC content: 32.94

Gene sequence:

>768_bases
ATGATAATAGATTCACATTGTCACCTTAATTATCTGAAGTTTGAGGATATAACTCTAGAGCAGGTTATTAATAATGCAAA
AAAAGCTGATATTGATAAAATTGTTTCAATAGCTGTAGCATGGCATGAAATTGAAGATATACAAAAAATAGCTGAAGATT
ATAGTGATGTTTATTTTTCTGTAGGGGTTCATCCTAGCGAATTAGATACTCATCAACCAAGTGTTGATGAGATTATAGTA
AGATCACAACACCAAAAATGTGTTGCTATTGGTGAGACAGGTTTAGACTATTACTATAATTCTAGTGATACTAAAAAAGC
TCAGATAGATAAATTTGCTAAGCATATCCAAGCAGCTAATCAAGTAAATAAGCCTGTAGTTGTACATATTCGCGCAGCAA
AACAAGATACTCTAGATATCTTAAAGTCAGAAAATGTAGAGAAATGTGGCGGAATACTACATTGTTTCACAGAAGATTAC
GATATGGCAAAAAAAGCTCTAGATATGGGTATGTATATATCATTTTCTGGAATTTTGACTTTTAAAAATGCTAAAGATAT
TCAAGAAACAGCGAAGAAACTACCCCTTGATAGAATTTTGATTGAAACAGATGCTCCATATCTAACGCCAGTACCGTTGC
GTGGTAAACCAAACTACCCAGAGTATGTCAAATATATCGCGCAGTTTTTGGCTGATTTAAAAGGCGTATCCTACCAGCAA
GTCGCAACACAGACTTATCAAAATACTTGTGAAATTTTCAAATTTTAA

Upstream 100 bases:

>100_bases
ATTAAAGAAAAAGCTTAGTTGTCTATTTAAGAGCTTTGCAAATAGTTTTTATACTATGAATAATTTATAATACTTACAGA
TACGATATATTTGCTAAATT

Downstream 100 bases:

>100_bases
GAATAGGCTCTTAAGTAAAATAGATTTTGTGCTAATATCTAGTTGCTAGCAATTTTTTAGTGATTTTACCAAGCTCTGAT
GATTGTTAGTACAGCGCGAT

Product: deoxyribonuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 255; Mature: 255

Protein sequence:

>255_residues
MIIDSHCHLNYLKFEDITLEQVINNAKKADIDKIVSIAVAWHEIEDIQKIAEDYSDVYFSVGVHPSELDTHQPSVDEIIV
RSQHQKCVAIGETGLDYYYNSSDTKKAQIDKFAKHIQAANQVNKPVVVHIRAAKQDTLDILKSENVEKCGGILHCFTEDY
DMAKKALDMGMYISFSGILTFKNAKDIQETAKKLPLDRILIETDAPYLTPVPLRGKPNYPEYVKYIAQFLADLKGVSYQQ
VATQTYQNTCEIFKF

Sequences:

>Translated_255_residues
MIIDSHCHLNYLKFEDITLEQVINNAKKADIDKIVSIAVAWHEIEDIQKIAEDYSDVYFSVGVHPSELDTHQPSVDEIIV
RSQHQKCVAIGETGLDYYYNSSDTKKAQIDKFAKHIQAANQVNKPVVVHIRAAKQDTLDILKSENVEKCGGILHCFTEDY
DMAKKALDMGMYISFSGILTFKNAKDIQETAKKLPLDRILIETDAPYLTPVPLRGKPNYPEYVKYIAQFLADLKGVSYQQ
VATQTYQNTCEIFKF
>Mature_255_residues
MIIDSHCHLNYLKFEDITLEQVINNAKKADIDKIVSIAVAWHEIEDIQKIAEDYSDVYFSVGVHPSELDTHQPSVDEIIV
RSQHQKCVAIGETGLDYYYNSSDTKKAQIDKFAKHIQAANQVNKPVVVHIRAAKQDTLDILKSENVEKCGGILHCFTEDY
DMAKKALDMGMYISFSGILTFKNAKDIQETAKKLPLDRILIETDAPYLTPVPLRGKPNYPEYVKYIAQFLADLKGVSYQQ
VATQTYQNTCEIFKF

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Homo sapiens, GI110349730, Length=270, Percent_Identity=30.7407407407407, Blast_Score=110, Evalue=2e-24,
Organism=Homo sapiens, GI226061853, Length=276, Percent_Identity=31.1594202898551, Blast_Score=108, Evalue=6e-24,
Organism=Homo sapiens, GI110349734, Length=270, Percent_Identity=30.3703703703704, Blast_Score=108, Evalue=6e-24,
Organism=Homo sapiens, GI226061614, Length=256, Percent_Identity=30.859375, Blast_Score=101, Evalue=6e-22,
Organism=Homo sapiens, GI225903424, Length=227, Percent_Identity=29.5154185022026, Blast_Score=101, Evalue=7e-22,
Organism=Homo sapiens, GI226061595, Length=233, Percent_Identity=31.7596566523605, Blast_Score=93, Evalue=3e-19,
Organism=Homo sapiens, GI14042943, Length=265, Percent_Identity=25.6603773584906, Blast_Score=90, Evalue=2e-18,
Organism=Homo sapiens, GI225903439, Length=239, Percent_Identity=26.3598326359833, Blast_Score=85, Evalue=6e-17,
Organism=Escherichia coli, GI1787342, Length=256, Percent_Identity=43.75, Blast_Score=228, Evalue=4e-61,
Organism=Escherichia coli, GI48994985, Length=238, Percent_Identity=30.672268907563, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI87082439, Length=255, Percent_Identity=26.6666666666667, Blast_Score=114, Evalue=6e-27,
Organism=Caenorhabditis elegans, GI17559024, Length=283, Percent_Identity=27.208480565371, Blast_Score=107, Evalue=5e-24,
Organism=Caenorhabditis elegans, GI71980746, Length=266, Percent_Identity=27.8195488721804, Blast_Score=91, Evalue=5e-19,
Organism=Caenorhabditis elegans, GI17543026, Length=298, Percent_Identity=25.503355704698, Blast_Score=84, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI17565396, Length=222, Percent_Identity=29.2792792792793, Blast_Score=78, Evalue=4e-15,
Organism=Drosophila melanogaster, GI24648690, Length=239, Percent_Identity=33.0543933054393, Blast_Score=99, Evalue=2e-21,
Organism=Drosophila melanogaster, GI24586117, Length=269, Percent_Identity=26.7657992565056, Blast_Score=94, Evalue=9e-20,
Organism=Drosophila melanogaster, GI221330018, Length=269, Percent_Identity=26.7657992565056, Blast_Score=94, Evalue=9e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278
- InterPro:   IPR015991 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.- [C]

Molecular weight: Translated: 28998; Mature: 28998

Theoretical pI: Translated: 5.81; Mature: 5.81

Prosite motif: PS01137 TATD_1 ; PS01091 TATD_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIIDSHCHLNYLKFEDITLEQVINNAKKADIDKIVSIAVAWHEIEDIQKIAEDYSDVYFS
CEECCCCCEEEEEECCCCHHHHHCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEE
VGVHPSELDTHQPSVDEIIVRSQHQKCVAIGETGLDYYYNSSDTKKAQIDKFAKHIQAAN
CCCCHHHCCCCCCCHHHHHHHCCCCCEEEECCCCCCEEECCCCCHHHHHHHHHHHHHHHH
QVNKPVVVHIRAAKQDTLDILKSENVEKCGGILHCFTEDYDMAKKALDMGMYISFSGILT
HCCCCEEEEEECCCHHHHHHHHCCCHHHHCCEEEEHHCCHHHHHHHHHCCEEEEEEEEEE
FKNAKDIQETAKKLPLDRILIETDAPYLTPVPLRGKPNYPEYVKYIAQFLADLKGVSYQQ
ECCHHHHHHHHHHCCHHHEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHH
VATQTYQNTCEIFKF
HHHHHHHHHHHHHCC
>Mature Secondary Structure
MIIDSHCHLNYLKFEDITLEQVINNAKKADIDKIVSIAVAWHEIEDIQKIAEDYSDVYFS
CEECCCCCEEEEEECCCCHHHHHCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEE
VGVHPSELDTHQPSVDEIIVRSQHQKCVAIGETGLDYYYNSSDTKKAQIDKFAKHIQAAN
CCCCHHHCCCCCCCHHHHHHHCCCCCEEEECCCCCCEEECCCCCHHHHHHHHHHHHHHHH
QVNKPVVVHIRAAKQDTLDILKSENVEKCGGILHCFTEDYDMAKKALDMGMYISFSGILT
HCCCCEEEEEECCCHHHHHHHHCCCHHHHCCEEEEHHCCHHHHHHHHHCCEEEEEEEEEE
FKNAKDIQETAKKLPLDRILIETDAPYLTPVPLRGKPNYPEYVKYIAQFLADLKGVSYQQ
ECCHHHHHHHHHHCCHHHEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHH
VATQTYQNTCEIFKF
HHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]