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The map label for this gene is yncC [H]

Identifier: 89255979

GI number: 89255979

Start: 559130

End: 560410

Strand: Direct

Name: yncC [H]

Synonym: FTL_0581

Alternate gene names: 89255979

Gene position: 559130-560410 (Clockwise)

Preceding gene: 89255978

Following gene: 89255985

Centisome position: 29.49

GC content: 30.76

Gene sequence:

>1281_bases
ATGTTAGTAACGAAATACCAAAAAATTGTTATAAGCCTAATTATATTGACAGGTGTTTGCTCTGGGTTTGATATAGGTGT
GATTTCTGGTACATTGCCAGTTATAAAAGATGAACTATCGCTTAATCTTACACAATTATCTGAGATAGCAGGTATTGTAT
TTTTTGGTGCGTTAATATCGAAACTTATATCAGGACCTTTAATGGATTTTTTAAGTAGAAAAAATGTTTTGGCATTTGGA
GCATTCTTATTTACAGTATCTATGGTCTTAATGATGTTCTCAAATACCTATACAACATTGATGTTATCAAGGCTTCTACA
AGGAATATCAATTGGATTTTTATTAACAGTAATTTCAGTTTATATCTCAGAAACTAGCGTAGCTAAGTTTCGTGGTAGAG
CAATGGGGATATTTCAATTATCTCTAGTTTCTGGAATTTTCTTGGCTAATTTCTTTGCTAGTCTATTAGTGGTTAGCTTT
GGTTGGCGATTAATATTTGCATGCGCTATTCCTTTTTCAATTTTACTTTTTATCATTAGCTTAATAGCGCCATTTTCACC
ATCTTGGTTGATATTAAAAGGTAAACATCAACAGGCTTTGCATATCAGTCAAAAATTAGCTTTAAAAGTACAGCATTCAT
TAACTAAAAAAAATAAAACAGGCTTTGTTGAATTTATCAAAATTGTTATCAAACAAAAGTACTATTTATCTGTAATACTG
ATTAGTCTAATGGCGGTTTTAAATGGCTTTGTTGGTATTAATGTTTTTATAAGTTATGGTCCAACTATGTTTGGGCAACT
TAGTAGCTGCAGCAGTTGTGATGCAACTTATTATGGTTCAGCGATGACATTAGTTAATCTCGTAGCTACTGTATTTGGAT
TATTCCTTGTTGATGTTATTGGTAGGAGAAAGCTAATTATAGGCGGATTGTTAATTTCTTTTATATCAATATTTACTATG
ATTCTTTGTATAACAGCAGGTTATAACAATTTAGGTTTAGTAATGTTGATTATTGTTGTATTTGGAGGCGCTGTAGGTCC
TGGAGTGTGTATTTGGTTGGTTTTATCAGAAGTTTTACCTGTGCATATACGTGGTATTGGGATATCTATAGCTCTTGTTT
CAAAAGCGCTAATAGAAAGTATGTTTATTTCAAGGTTTTTGGATCTTACTTATAATTATGGCTATGCTCCAGTATTATAT
TTTATGGGAGCTTGTATCGTTGTATTTATTATTATTGTGTATAAATTTTTACCAGAAATGACAAATAAAGAACTTATTTA
A

Upstream 100 bases:

>100_bases
ATATTGTGATAAAACTTTAACTTTATTTATGTATCTTTATAGTTATGAGTTTGCTACTTAGCTGTTGAGTATTTAATTTA
AATTCTGTAGAGAGGATCTA

Downstream 100 bases:

>100_bases
GATGTGCTACTAAATCGTCAAGTTTATAATTTGCGATATCTTTTTGTTTAGCATGATGCTCTTCTAAAAGGGCAAAATCA
GCATCAGCATAAGCACATAG

Product: sugar transport protein

Products: Proton [Cytoplasm]; L-arabinose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 426; Mature: 426

Protein sequence:

>426_residues
MLVTKYQKIVISLIILTGVCSGFDIGVISGTLPVIKDELSLNLTQLSEIAGIVFFGALISKLISGPLMDFLSRKNVLAFG
AFLFTVSMVLMMFSNTYTTLMLSRLLQGISIGFLLTVISVYISETSVAKFRGRAMGIFQLSLVSGIFLANFFASLLVVSF
GWRLIFACAIPFSILLFIISLIAPFSPSWLILKGKHQQALHISQKLALKVQHSLTKKNKTGFVEFIKIVIKQKYYLSVIL
ISLMAVLNGFVGINVFISYGPTMFGQLSSCSSCDATYYGSAMTLVNLVATVFGLFLVDVIGRRKLIIGGLLISFISIFTM
ILCITAGYNNLGLVMLIIVVFGGAVGPGVCIWLVLSEVLPVHIRGIGISIALVSKALIESMFISRFLDLTYNYGYAPVLY
FMGACIVVFIIIVYKFLPEMTNKELI

Sequences:

>Translated_426_residues
MLVTKYQKIVISLIILTGVCSGFDIGVISGTLPVIKDELSLNLTQLSEIAGIVFFGALISKLISGPLMDFLSRKNVLAFG
AFLFTVSMVLMMFSNTYTTLMLSRLLQGISIGFLLTVISVYISETSVAKFRGRAMGIFQLSLVSGIFLANFFASLLVVSF
GWRLIFACAIPFSILLFIISLIAPFSPSWLILKGKHQQALHISQKLALKVQHSLTKKNKTGFVEFIKIVIKQKYYLSVIL
ISLMAVLNGFVGINVFISYGPTMFGQLSSCSSCDATYYGSAMTLVNLVATVFGLFLVDVIGRRKLIIGGLLISFISIFTM
ILCITAGYNNLGLVMLIIVVFGGAVGPGVCIWLVLSEVLPVHIRGIGISIALVSKALIESMFISRFLDLTYNYGYAPVLY
FMGACIVVFIIIVYKFLPEMTNKELI
>Mature_426_residues
MLVTKYQKIVISLIILTGVCSGFDIGVISGTLPVIKDELSLNLTQLSEIAGIVFFGALISKLISGPLMDFLSRKNVLAFG
AFLFTVSMVLMMFSNTYTTLMLSRLLQGISIGFLLTVISVYISETSVAKFRGRAMGIFQLSLVSGIFLANFFASLLVVSF
GWRLIFACAIPFSILLFIISLIAPFSPSWLILKGKHQQALHISQKLALKVQHSLTKKNKTGFVEFIKIVIKQKYYLSVIL
ISLMAVLNGFVGINVFISYGPTMFGQLSSCSSCDATYYGSAMTLVNLVATVFGLFLVDVIGRRKLIIGGLLISFISIFTM
ILCITAGYNNLGLVMLIIVVFGGAVGPGVCIWLVLSEVLPVHIRGIGISIALVSKALIESMFISRFLDLTYNYGYAPVLY
FMGACIVVFIIIVYKFLPEMTNKELI

Specific function: Uptake Of Arabinose Across The Boundary Membrane With The Concomitant Transport Of Protons Into The Cell (Symport System). [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family [H]

Homologues:

Organism=Homo sapiens, GI203098995, Length=325, Percent_Identity=28.3076923076923, Blast_Score=99, Evalue=5e-21,
Organism=Homo sapiens, GI21553331, Length=322, Percent_Identity=25.776397515528, Blast_Score=82, Evalue=7e-16,
Organism=Homo sapiens, GI166795299, Length=385, Percent_Identity=25.974025974026, Blast_Score=70, Evalue=4e-12,
Organism=Homo sapiens, GI5902090, Length=415, Percent_Identity=23.855421686747, Blast_Score=69, Evalue=1e-11,
Organism=Homo sapiens, GI23592238, Length=395, Percent_Identity=23.5443037974684, Blast_Score=67, Evalue=3e-11,
Organism=Homo sapiens, GI7662270, Length=229, Percent_Identity=24.8908296943231, Blast_Score=67, Evalue=3e-11,
Organism=Escherichia coli, GI1789207, Length=422, Percent_Identity=26.0663507109005, Blast_Score=132, Evalue=3e-32,
Organism=Escherichia coli, GI1789312, Length=428, Percent_Identity=26.8691588785047, Blast_Score=129, Evalue=4e-31,
Organism=Escherichia coli, GI1790463, Length=467, Percent_Identity=27.4089935760171, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI1786229, Length=373, Percent_Identity=23.3243967828418, Blast_Score=65, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17534705, Length=420, Percent_Identity=24.5238095238095, Blast_Score=94, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI17534703, Length=420, Percent_Identity=24.5238095238095, Blast_Score=93, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI71988651, Length=326, Percent_Identity=25.7668711656442, Blast_Score=86, Evalue=5e-17,
Organism=Caenorhabditis elegans, GI25148667, Length=457, Percent_Identity=26.2582056892779, Blast_Score=84, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17565976, Length=307, Percent_Identity=24.7557003257329, Blast_Score=81, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17565978, Length=333, Percent_Identity=23.1231231231231, Blast_Score=80, Evalue=2e-15,
Organism=Saccharomyces cerevisiae, GI6320705, Length=452, Percent_Identity=23.2300884955752, Blast_Score=86, Evalue=1e-17,
Organism=Saccharomyces cerevisiae, GI6324469, Length=475, Percent_Identity=24.8421052631579, Blast_Score=82, Evalue=1e-16,
Organism=Saccharomyces cerevisiae, GI6323653, Length=404, Percent_Identity=23.5148514851485, Blast_Score=79, Evalue=1e-15,
Organism=Saccharomyces cerevisiae, GI6319718, Length=312, Percent_Identity=24.6794871794872, Blast_Score=77, Evalue=4e-15,
Organism=Saccharomyces cerevisiae, GI6321100, Length=441, Percent_Identity=24.2630385487528, Blast_Score=75, Evalue=2e-14,
Organism=Saccharomyces cerevisiae, GI6320595, Length=185, Percent_Identity=31.8918918918919, Blast_Score=73, Evalue=1e-13,
Organism=Saccharomyces cerevisiae, GI6321334, Length=329, Percent_Identity=21.2765957446809, Blast_Score=71, Evalue=3e-13,
Organism=Saccharomyces cerevisiae, GI6321888, Length=308, Percent_Identity=23.0519480519481, Blast_Score=70, Evalue=4e-13,
Organism=Saccharomyces cerevisiae, GI6320766, Length=451, Percent_Identity=21.9512195121951, Blast_Score=69, Evalue=2e-12,
Organism=Saccharomyces cerevisiae, GI6324400, Length=451, Percent_Identity=21.9512195121951, Blast_Score=69, Evalue=2e-12,
Organism=Saccharomyces cerevisiae, GI6321884, Length=363, Percent_Identity=24.5179063360882, Blast_Score=67, Evalue=5e-12,
Organism=Saccharomyces cerevisiae, GI6320550, Length=451, Percent_Identity=23.059866962306, Blast_Score=67, Evalue=7e-12,
Organism=Saccharomyces cerevisiae, GI6320549, Length=451, Percent_Identity=23.059866962306, Blast_Score=67, Evalue=7e-12,
Organism=Saccharomyces cerevisiae, GI6322247, Length=454, Percent_Identity=22.4669603524229, Blast_Score=67, Evalue=8e-12,
Organism=Saccharomyces cerevisiae, GI6322618, Length=451, Percent_Identity=21.2860310421286, Blast_Score=64, Evalue=5e-11,
Organism=Saccharomyces cerevisiae, GI6319956, Length=451, Percent_Identity=21.2860310421286, Blast_Score=64, Evalue=6e-11,
Organism=Drosophila melanogaster, GI24652795, Length=409, Percent_Identity=25.4278728606357, Blast_Score=96, Evalue=5e-20,
Organism=Drosophila melanogaster, GI24652793, Length=409, Percent_Identity=25.4278728606357, Blast_Score=96, Evalue=6e-20,
Organism=Drosophila melanogaster, GI24652791, Length=386, Percent_Identity=26.4248704663212, Blast_Score=88, Evalue=1e-17,
Organism=Drosophila melanogaster, GI24652789, Length=393, Percent_Identity=26.4631043256997, Blast_Score=82, Evalue=9e-16,
Organism=Drosophila melanogaster, GI19920644, Length=413, Percent_Identity=25.90799031477, Blast_Score=79, Evalue=6e-15,
Organism=Drosophila melanogaster, GI24663515, Length=419, Percent_Identity=23.8663484486874, Blast_Score=77, Evalue=3e-14,
Organism=Drosophila melanogaster, GI24663519, Length=419, Percent_Identity=23.8663484486874, Blast_Score=77, Evalue=3e-14,
Organism=Drosophila melanogaster, GI24663511, Length=419, Percent_Identity=23.8663484486874, Blast_Score=75, Evalue=9e-14,
Organism=Drosophila melanogaster, GI20130083, Length=406, Percent_Identity=23.6453201970443, Blast_Score=75, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24654932, Length=380, Percent_Identity=23.9473684210526, Blast_Score=75, Evalue=1e-13,
Organism=Drosophila melanogaster, GI17737517, Length=380, Percent_Identity=23.9473684210526, Blast_Score=75, Evalue=1e-13,
Organism=Drosophila melanogaster, GI161080349, Length=381, Percent_Identity=23.8845144356955, Blast_Score=75, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24640198, Length=505, Percent_Identity=22.970297029703, Blast_Score=74, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24640196, Length=505, Percent_Identity=22.970297029703, Blast_Score=74, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24640200, Length=505, Percent_Identity=22.970297029703, Blast_Score=74, Evalue=2e-13,
Organism=Drosophila melanogaster, GI21357295, Length=359, Percent_Identity=24.7910863509749, Blast_Score=74, Evalue=2e-13,
Organism=Drosophila melanogaster, GI161080353, Length=351, Percent_Identity=23.9316239316239, Blast_Score=74, Evalue=2e-13,
Organism=Drosophila melanogaster, GI28573193, Length=464, Percent_Identity=23.7068965517241, Blast_Score=73, Evalue=3e-13,
Organism=Drosophila melanogaster, GI161078056, Length=359, Percent_Identity=24.7910863509749, Blast_Score=73, Evalue=3e-13,
Organism=Drosophila melanogaster, GI161080351, Length=387, Percent_Identity=24.2894056847545, Blast_Score=71, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24644782, Length=446, Percent_Identity=24.4394618834081, Blast_Score=71, Evalue=1e-12,
Organism=Drosophila melanogaster, GI161076658, Length=452, Percent_Identity=23.6725663716814, Blast_Score=71, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24644448, Length=188, Percent_Identity=29.2553191489362, Blast_Score=71, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24644446, Length=188, Percent_Identity=29.2553191489362, Blast_Score=71, Evalue=2e-12,
Organism=Drosophila melanogaster, GI45551160, Length=391, Percent_Identity=23.2736572890026, Blast_Score=68, Evalue=1e-11,
Organism=Drosophila melanogaster, GI17737451, Length=444, Percent_Identity=23.6486486486486, Blast_Score=67, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24652312, Length=444, Percent_Identity=23.6486486486486, Blast_Score=67, Evalue=3e-11,
Organism=Drosophila melanogaster, GI28573650, Length=365, Percent_Identity=22.4657534246575, Blast_Score=65, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR016196
- InterPro:   IPR005828
- InterPro:   IPR003663
- InterPro:   IPR005829 [H]

Pfam domain/function: PF00083 Sugar_tr [H]

EC number: NA

Molecular weight: Translated: 46647; Mature: 46647

Theoretical pI: Translated: 9.87; Mature: 9.87

Prosite motif: PS50850 MFS ; PS00216 SUGAR_TRANSPORT_1 ; PS00217 SUGAR_TRANSPORT_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCCCCC
>Mature Secondary Structure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CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Proton [Periplasm]; L-arabinose [Periplasm] [C]

Specific reaction: L-arabinose = L-ribulose Proton [Periplasm] + arabinose [Periplasm] = Proton [Cytoplasm] + arabinose [Cytoplasm] [C]

General reaction: Isomerases; Intramolecular Oxidoreductases; Interconverting Aldoses and Ketoses; L-arabinose isomerase Reaction [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]