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The map label for this gene is yqgF [C]

Identifier: 89054672

GI number: 89054672

Start: 2187530

End: 2187967

Strand: Reverse

Name: yqgF [C]

Synonym: Jann_2181

Alternate gene names: 89054672

Gene position: 2187967-2187530 (Counterclockwise)

Preceding gene: 89054673

Following gene: 89054671

Centisome position: 50.67

GC content: 64.38

Gene sequence:

>438_bases
ATGCGGGGACTCATCGGGCTTGATCTGGGGACGAAGACCATCGGTGTCGCGCTGTCCGACAGGCTGCTGACCTCGGCCAG
CGCGCTGGAGACGGTGAAGCGCAAGAAATTTGGCGTGGATGCTGATGCCCTTGCCGGTTTGATTGCCAAGCACGAGGTCG
GCGGGATCATCCTTGGCCTGCCCCGCAATATGGACGGATCGGAAGGACCGCGCGCCCAAGCGACCCGGGCCTTTGCCCTG
AACCTGTCGCGCCGGGGCGATTTTGCGCATCTGGCGCTGGGGTTCTGGGACGAACGGCTCAGCACCGTCGCGGCGGAGCG
CGCGTTGATTGCGGCGGATACGAGCCGAAAGCGTCGCTCTGAAGTGATCGACGCCGTGGCCGCGAGCTATATCTTGCAAG
GTGCGCTGGACCGGTTGCGCCATTTGAGGGCTGTGTGA

Upstream 100 bases:

>100_bases
CGCTGGATATGATTGACGAGGCTTTCCGCGCGGCAATGGCCCGGATTGGCGAGCAATGATCTTTGAAACGCTCGATGAGT
TCGCCGGGGCCGTGCCGCCC

Downstream 100 bases:

>100_bases
TGAGCGATGACGTCTGGCACCGTGACGAAATCCAGTCACCCTGCGTGAAGATCTGCCTGATCCACCCCGAGGCGCGGCTT
TGCACCGGCTGTCTGCGTAC

Product: Holliday junction resolvase YqgF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 145; Mature: 145

Protein sequence:

>145_residues
MRGLIGLDLGTKTIGVALSDRLLTSASALETVKRKKFGVDADALAGLIAKHEVGGIILGLPRNMDGSEGPRAQATRAFAL
NLSRRGDFAHLALGFWDERLSTVAAERALIAADTSRKRRSEVIDAVAASYILQGALDRLRHLRAV

Sequences:

>Translated_145_residues
MRGLIGLDLGTKTIGVALSDRLLTSASALETVKRKKFGVDADALAGLIAKHEVGGIILGLPRNMDGSEGPRAQATRAFAL
NLSRRGDFAHLALGFWDERLSTVAAERALIAADTSRKRRSEVIDAVAASYILQGALDRLRHLRAV
>Mature_145_residues
MRGLIGLDLGTKTIGVALSDRLLTSASALETVKRKKFGVDADALAGLIAKHEVGGIILGLPRNMDGSEGPRAQATRAFAL
NLSRRGDFAHLALGFWDERLSTVAAERALIAADTSRKRRSEVIDAVAASYILQGALDRLRHLRAV

Specific function: Could be a nuclease that resolves Holliday junction intermediates in genetic recombination

COG id: COG0816

COG function: function code L; Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yqgF HJR family

Homologues:

Organism=Escherichia coli, GI1789318, Length=135, Percent_Identity=33.3333333333333, Blast_Score=68, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RUVX_JANSC (Q28QB4)

Other databases:

- EMBL:   CP000264
- RefSeq:   YP_510123.1
- ProteinModelPortal:   Q28QB4
- SMR:   Q28QB4
- STRING:   Q28QB4
- GeneID:   3934635
- GenomeReviews:   CP000264_GR
- KEGG:   jan:Jann_2181
- eggNOG:   COG0816
- HOGENOM:   HBG607919
- PhylomeDB:   Q28QB4
- BioCyc:   JSP290400:JANN_2181-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00651
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR012337
- Gene3D:   G3DSA:3.30.420.140
- SMART:   SM00732
- TIGRFAMs:   TIGR00250

Pfam domain/function: PF03652 UPF0081; SSF53098 RNaseH_fold

EC number: NA

Molecular weight: Translated: 15502; Mature: 15502

Theoretical pI: Translated: 10.99; Mature: 10.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRGLIGLDLGTKTIGVALSDRLLTSASALETVKRKKFGVDADALAGLIAKHEVGGIILGL
CCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCEEEEEC
PRNMDGSEGPRAQATRAFALNLSRRGDFAHLALGFWDERLSTVAAERALIAADTSRKRRS
CCCCCCCCCCCHHHHHHHEEECCCCCCEEHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
EVIDAVAASYILQGALDRLRHLRAV
HHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MRGLIGLDLGTKTIGVALSDRLLTSASALETVKRKKFGVDADALAGLIAKHEVGGIILGL
CCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCEEEEEC
PRNMDGSEGPRAQATRAFALNLSRRGDFAHLALGFWDERLSTVAAERALIAADTSRKRRS
CCCCCCCCCCCHHHHHHHEEECCCCCCEEHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
EVIDAVAASYILQGALDRLRHLRAV
HHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA