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The map label for this gene is yfkH [H]

Identifier: 89054551

GI number: 89054551

Start: 2069074

End: 2070030

Strand: Reverse

Name: yfkH [H]

Synonym: Jann_2060

Alternate gene names: 89054551

Gene position: 2070030-2069074 (Counterclockwise)

Preceding gene: 89054556

Following gene: 89054550

Centisome position: 47.94

GC content: 61.65

Gene sequence:

>957_bases
ATGGCGCGCGGACGCAAAGCAGAAACTCCGACAGAAGTCCCGGCATCTGGATGGAAGGACGTCGCCTTTCGCCTGAAAGA
CGAGGTCGCCAACGACCGGGTCGGATTGATCGCCGCGGGCGTGGCCTTCTACGGGTTGCTGGCGCTTTTCCCGGCGATCA
CCGCCGTGATGGCCATCAGTGGTTTGCTGATCGAGCCCAACGCGATTGTCGACCAACTCAGCCGGTTGGGCGGCCTGCTC
CCGCAGGAGGTGATTGCCATCGTAACGGATCAGGCGACGGCCGTGGCCGGATCGCGCGAAGGCGGGCTTGGCCTTGCTGC
AATCTTCGGCGTGCTGGTTGCATTTTACTCCGCGTCAAAGGGGATGGCGAGCCTGATGCAGGGTGTGAACGTCGCCTATG
ACGAAGATGAAGAGCGTGGGTTCATCAGGCTGAAGCTCGTGACTTTCGGCCTGACGCTCCTGCTGATCGTGGGTCTTCTG
GTCTCTCTCGGGGCGATGCTGGCGCTTCCGGCGGTGCTGGCGTTCATCGACCTTGGCCCAATGGTGGAGGCCCTGCTGAC
AGCGGCTCTTTGGGTGGGTTTGATCGCGTTGACGATTTTCGGTCTGTCGGTGCTCTATCGCTACGCGCCGTCGCGCGAGA
ATGCTGAATGGAAATGGGTCTCACTCGGGGCCGTGGTGGGATGCGTCGTCTGGATCGTCGCATCGGCGGGATTTGCGTTC
TACGTGGCGAATTTCGGCTCCTACAACGAAAGCTTCGGGACGCTGGGGGGCGTGGTCGTTTTGTTGATGTGGTTCTGGAT
CTCCGCGTTCATCATCTTGCTGGGGGCAGAACTTAACGCCGAGCTGGAGGCGCAGACCAGGCGTGACACAACAACAGGCC
CCGATCAGCCAATGGGATCGCGTGACGCCGTGAAAGCCGATAGGTTGGGGGCATCAACGGCGGCCGGCGAAGCCTGA

Upstream 100 bases:

>100_bases
CGCCGCCGAGGCGGAAATAATATTTTGGCAAGTTCAGCTGATGAGTTGGACGACAATCAGGGCCATCTGGCCTGCCACAA
TCCAACCTGAAAGGTTTCCC

Downstream 100 bases:

>100_bases
CTTCATTGGTCCGATCCTGCCTCTGCCCCTTTTTCCGCGCGCCTTTTTTGTCCCACCCGGAAGTATTTCATGACCGACCC
CGTCGCCAGACCCCCAGCAC

Product: ribonuclease BN

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 318; Mature: 317

Protein sequence:

>318_residues
MARGRKAETPTEVPASGWKDVAFRLKDEVANDRVGLIAAGVAFYGLLALFPAITAVMAISGLLIEPNAIVDQLSRLGGLL
PQEVIAIVTDQATAVAGSREGGLGLAAIFGVLVAFYSASKGMASLMQGVNVAYDEDEERGFIRLKLVTFGLTLLLIVGLL
VSLGAMLALPAVLAFIDLGPMVEALLTAALWVGLIALTIFGLSVLYRYAPSRENAEWKWVSLGAVVGCVVWIVASAGFAF
YVANFGSYNESFGTLGGVVVLLMWFWISAFIILLGAELNAELEAQTRRDTTTGPDQPMGSRDAVKADRLGASTAAGEA

Sequences:

>Translated_318_residues
MARGRKAETPTEVPASGWKDVAFRLKDEVANDRVGLIAAGVAFYGLLALFPAITAVMAISGLLIEPNAIVDQLSRLGGLL
PQEVIAIVTDQATAVAGSREGGLGLAAIFGVLVAFYSASKGMASLMQGVNVAYDEDEERGFIRLKLVTFGLTLLLIVGLL
VSLGAMLALPAVLAFIDLGPMVEALLTAALWVGLIALTIFGLSVLYRYAPSRENAEWKWVSLGAVVGCVVWIVASAGFAF
YVANFGSYNESFGTLGGVVVLLMWFWISAFIILLGAELNAELEAQTRRDTTTGPDQPMGSRDAVKADRLGASTAAGEA
>Mature_317_residues
ARGRKAETPTEVPASGWKDVAFRLKDEVANDRVGLIAAGVAFYGLLALFPAITAVMAISGLLIEPNAIVDQLSRLGGLLP
QEVIAIVTDQATAVAGSREGGLGLAAIFGVLVAFYSASKGMASLMQGVNVAYDEDEERGFIRLKLVTFGLTLLLIVGLLV
SLGAMLALPAVLAFIDLGPMVEALLTAALWVGLIALTIFGLSVLYRYAPSRENAEWKWVSLGAVVGCVVWIVASAGFAFY
VANFGSYNESFGTLGGVVVLLMWFWISAFIILLGAELNAELEAQTRRDTTTGPDQPMGSRDAVKADRLGASTAAGEA

Specific function: 3' To 5' Exoribonuclease Necessary For 3'Maturation Of tRNA Molecules. [C]

COG id: COG1295

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017039
- InterPro:   IPR004664 [H]

Pfam domain/function: PF03631 Ribonuclease_BN [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 33446; Mature: 33315

Theoretical pI: Translated: 4.45; Mature: 4.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARGRKAETPTEVPASGWKDVAFRLKDEVANDRVGLIAAGVAFYGLLALFPAITAVMAIS
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
GLLIEPNAIVDQLSRLGGLLPQEVIAIVTDQATAVAGSREGGLGLAAIFGVLVAFYSASK
CHHCCCHHHHHHHHHHCCCCHHHHHHHHHCCHHHHCCCCCCCHHHHHHHHHHHHHHHCCC
GMASLMQGVNVAYDEDEERGFIRLKLVTFGLTLLLIVGLLVSLGAMLALPAVLAFIDLGP
HHHHHHHCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MVEALLTAALWVGLIALTIFGLSVLYRYAPSRENAEWKWVSLGAVVGCVVWIVASAGFAF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHHHHCCHHH
YVANFGSYNESFGTLGGVVVLLMWFWISAFIILLGAELNAELEAQTRRDTTTGPDQPMGS
HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCCCCCC
RDAVKADRLGASTAAGEA
CHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
ARGRKAETPTEVPASGWKDVAFRLKDEVANDRVGLIAAGVAFYGLLALFPAITAVMAIS
CCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
GLLIEPNAIVDQLSRLGGLLPQEVIAIVTDQATAVAGSREGGLGLAAIFGVLVAFYSASK
CHHCCCHHHHHHHHHHCCCCHHHHHHHHHCCHHHHCCCCCCCHHHHHHHHHHHHHHHCCC
GMASLMQGVNVAYDEDEERGFIRLKLVTFGLTLLLIVGLLVSLGAMLALPAVLAFIDLGP
HHHHHHHCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MVEALLTAALWVGLIALTIFGLSVLYRYAPSRENAEWKWVSLGAVVGCVVWIVASAGFAF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHHHHCCHHH
YVANFGSYNESFGTLGGVVVLLMWFWISAFIILLGAELNAELEAQTRRDTTTGPDQPMGS
HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCCCCCC
RDAVKADRLGASTAAGEA
CHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969503; 9384377 [H]