Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
---|---|
Accession | NC_007802 |
Length | 4,317,977 |
Click here to switch to the map view.
The map label for this gene is 89054532
Identifier: 89054532
GI number: 89054532
Start: 2046189
End: 2046695
Strand: Reverse
Name: 89054532
Synonym: Jann_2041
Alternate gene names: NA
Gene position: 2046695-2046189 (Counterclockwise)
Preceding gene: 89054533
Following gene: 89054523
Centisome position: 47.4
GC content: 60.55
Gene sequence:
>507_bases ATGACGCAACGAGATACGGCGCAGGCGACATTCGCCCAGGACCTGTCCAATGTAACATCGGAGGCCGAGGCGCTTGAGGC CCTCTACCAGCTGAGCCATACGCTGATGCCCGTGCGCCTGTGGACCGTCATGACCGTCGACCTGGACGCAGGCATCGCGC GGCGCGCCTATTCCAACATGCCAAAGGCTTATCCCACATCCGGCACGAAACCGATCGTTCACAACGACTGGTTCGATATC GTCCACGCGCAAAAGGAATGTTTTGTGGCGAACACTCTGGCCGACATCGCGGCGGTGTTCCCGGATCACGCGTTGATCGG ATCGCTTGGCTGTGCATCGGTGATGAACTTGCCGATTTTCGAGGAGGGCACATTGCTGGCAACCGTGAACCTTCTGGACG CGGAGGGTCATTTCACGGCTGACCGCGTCGCCACCTATTGCGACACCCTCGCAAGTCCTGCCTCACGGGCCATGCGCACG GCCCGGGACTTGGCTCATGTCACGTGA
Upstream 100 bases:
>100_bases TCGCGCCGTCCACCGCGCTCCATGACGGCAGCTTCGAAGATCCGTATTCCCAGACGCTCTACGCCGCCAGCGGCGGTCCC GGTTGAGACAGGAGACATCC
Downstream 100 bases:
>100_bases TGGCCAGCATCTCATCCGATGTCTGTTGTTCGGCTGCCATCTTTGATACTCCGGGCCCTATTGAGGGCCGGATGAATTGC CCGGATGCGATGGATCAGAC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 168; Mature: 167
Protein sequence:
>168_residues MTQRDTAQATFAQDLSNVTSEAEALEALYQLSHTLMPVRLWTVMTVDLDAGIARRAYSNMPKAYPTSGTKPIVHNDWFDI VHAQKECFVANTLADIAAVFPDHALIGSLGCASVMNLPIFEEGTLLATVNLLDAEGHFTADRVATYCDTLASPASRAMRT ARDLAHVT
Sequences:
>Translated_168_residues MTQRDTAQATFAQDLSNVTSEAEALEALYQLSHTLMPVRLWTVMTVDLDAGIARRAYSNMPKAYPTSGTKPIVHNDWFDI VHAQKECFVANTLADIAAVFPDHALIGSLGCASVMNLPIFEEGTLLATVNLLDAEGHFTADRVATYCDTLASPASRAMRT ARDLAHVT >Mature_167_residues TQRDTAQATFAQDLSNVTSEAEALEALYQLSHTLMPVRLWTVMTVDLDAGIARRAYSNMPKAYPTSGTKPIVHNDWFDIV HAQKECFVANTLADIAAVFPDHALIGSLGCASVMNLPIFEEGTLLATVNLLDAEGHFTADRVATYCDTLASPASRAMRTA RDLAHVT
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18255; Mature: 18124
Theoretical pI: Translated: 4.89; Mature: 4.89
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 5.4 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTQRDTAQATFAQDLSNVTSEAEALEALYQLSHTLMPVRLWTVMTVDLDAGIARRAYSNM CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCHHHHHHHHCC PKAYPTSGTKPIVHNDWFDIVHAQKECFVANTLADIAAVFPDHALIGSLGCASVMNLPIF CCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC EEGTLLATVNLLDAEGHFTADRVATYCDTLASPASRAMRTARDLAHVT CCCCEEEEEEEECCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCC >Mature Secondary Structure TQRDTAQATFAQDLSNVTSEAEALEALYQLSHTLMPVRLWTVMTVDLDAGIARRAYSNM CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCHHHHHHHHCC PKAYPTSGTKPIVHNDWFDIVHAQKECFVANTLADIAAVFPDHALIGSLGCASVMNLPIF CCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC EEGTLLATVNLLDAEGHFTADRVATYCDTLASPASRAMRTARDLAHVT CCCCEEEEEEEECCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA