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The map label for this gene is lrpC [H]

Identifier: 89054499

GI number: 89054499

Start: 2014851

End: 2015372

Strand: Direct

Name: lrpC [H]

Synonym: Jann_2008

Alternate gene names: 89054499

Gene position: 2014851-2015372 (Clockwise)

Preceding gene: 89054497

Following gene: 89054500

Centisome position: 46.66

GC content: 54.21

Gene sequence:

>522_bases
ATGATATGGAGGTCAGATATGTCTATCGCGGAATTTAAGGCACAAAAGAAGGAAATACATCCTTCCAACCTTCGATCCGA
AGGTAGTGGTTTAGATAGCATTGATGCTGCGATTTTGCGTGAGCTTTGTGAAGATGCGCGGATTCCGCGTGCAGAGCTAT
CTCGGCGAGTGGGCTTGTCAGCGCCAAGCGTTGCTGATCGTGTGCGGCGCTTAGAGGACGTGGGCATCATCGCAGGCTAT
GGCGCACGCATTGATCCAGCCCGCCTTGGCTATGGGTTGACGATCCTAATCCGCGCGCGGCCTTTGCCGGGTGAGATGAG
CAACATGATCGAAGCAATTCAGGACACACCGCAGATCGTCGCCTGTGATCGCGTCTCAGGTGAGGATTGCTTTGTTGCCC
GCGCGCATGTTCGAGACGTGGCTGAAATGGAGGCTGTCATTGATCGGATCGTGCCGTTTGGTGCGACCAACTCATCCATC
GTCCAATCGTCACCCGTCGAAGAACGACTGGTTCAGCTTTGA

Upstream 100 bases:

>100_bases
GCCTCTGACATGCGGGACATAGCACCAGGGGCGCTGGCGGAGGCGGGGTTTGTGGGGGCTTGATTCGACATAACGTCATA
ATGCAAGGTGTTTTGCAGGT

Downstream 100 bases:

>100_bases
TATCAAAACAGTCATTTACCCTGATCCAGCGAAAGAGCGCTTAGTCCCGCAATGTGTACGTTGGACGAGGCCCGGGGTTC
GCGCTTGCGGTGAATGTCCG

Product: AsnC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 173; Mature: 173

Protein sequence:

>173_residues
MIWRSDMSIAEFKAQKKEIHPSNLRSEGSGLDSIDAAILRELCEDARIPRAELSRRVGLSAPSVADRVRRLEDVGIIAGY
GARIDPARLGYGLTILIRARPLPGEMSNMIEAIQDTPQIVACDRVSGEDCFVARAHVRDVAEMEAVIDRIVPFGATNSSI
VQSSPVEERLVQL

Sequences:

>Translated_173_residues
MIWRSDMSIAEFKAQKKEIHPSNLRSEGSGLDSIDAAILRELCEDARIPRAELSRRVGLSAPSVADRVRRLEDVGIIAGY
GARIDPARLGYGLTILIRARPLPGEMSNMIEAIQDTPQIVACDRVSGEDCFVARAHVRDVAEMEAVIDRIVPFGATNSSI
VQSSPVEERLVQL
>Mature_173_residues
MIWRSDMSIAEFKAQKKEIHPSNLRSEGSGLDSIDAAILRELCEDARIPRAELSRRVGLSAPSVADRVRRLEDVGIIAGY
GARIDPARLGYGLTILIRARPLPGEMSNMIEAIQDTPQIVACDRVSGEDCFVARAHVRDVAEMEAVIDRIVPFGATNSSI
VQSSPVEERLVQL

Specific function: Transcriptional regulator with a possible role in regulation of amino acid metabolism. Plays a role in the growth phase transition [H]

COG id: COG1522

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787116, Length=123, Percent_Identity=36.5853658536585, Blast_Score=75, Evalue=2e-15,
Organism=Escherichia coli, GI87081742, Length=141, Percent_Identity=28.3687943262411, Blast_Score=64, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR000485
- InterPro:   IPR000835
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01037 AsnC_trans_reg; PF01047 MarR [H]

EC number: NA

Molecular weight: Translated: 18980; Mature: 18980

Theoretical pI: Translated: 5.09; Mature: 5.09

Prosite motif: PS00519 HTH_ASNC_1 ; PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIWRSDMSIAEFKAQKKEIHPSNLRSEGSGLDSIDAAILRELCEDARIPRAELSRRVGLS
CCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCC
APSVADRVRRLEDVGIIAGYGARIDPARLGYGLTILIRARPLPGEMSNMIEAIQDTPQIV
CCHHHHHHHHHHHCCEEECCCCCCCHHHHCCCEEEEEECCCCCHHHHHHHHHHHCCCCEE
ACDRVSGEDCFVARAHVRDVAEMEAVIDRIVPFGATNSSIVQSSPVEERLVQL
EECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCCCHHHHHHCC
>Mature Secondary Structure
MIWRSDMSIAEFKAQKKEIHPSNLRSEGSGLDSIDAAILRELCEDARIPRAELSRRVGLS
CCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCC
APSVADRVRRLEDVGIIAGYGARIDPARLGYGLTILIRARPLPGEMSNMIEAIQDTPQIV
CCHHHHHHHHHHHCCEEECCCCCCCHHHHCCCEEEEEECCCCCHHHHHHHHHHHCCCCEE
ACDRVSGEDCFVARAHVRDVAEMEAVIDRIVPFGATNSSIVQSSPVEERLVQL
EECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCCCHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377; 9341680 [H]