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The map label for this gene is infC

Identifier: 89054259

GI number: 89054259

Start: 1757083

End: 1757748

Strand: Reverse

Name: infC

Synonym: Jann_1768

Alternate gene names: 89054259

Gene position: 1757748-1757083 (Counterclockwise)

Preceding gene: 89054261

Following gene: 89054258

Centisome position: 40.71

GC content: 57.51

Gene sequence:

>666_bases
ATGGTCGGGCCGCGAAATCATGCTCTCTTGGGCGAAATTGAGCCGTTATCTGCCTTGAAGAATAGGCGCGCGAGGGATAC
CTTCGCATATCAAACAGATGGCTACAAAAGGACCAATGTCATAGCCCGCAGACCCCATAACGCGCCGCCGCAACGCGATA
CCGGCCCCCGCGTCAACGATCGAATTCGCTCAGACAACGTCCGCCTCATTGGCGCGGAAGGTGAAAATCTCGGCGTGGTA
ACGCCCGCCCGCGCTATGGATCTGGCGGCTGATGCCGACCTGGATCTGGTGGAAATCTCACCGAATGCAGATCCCCCGGT
GTGCAAGATCATGGATTTCGGAAAGTATAAGTACGAGACCCAGAAGCGCGAGGCCGAGGCCCGCAAGAAGCAGAAAACCA
TCGACATCAAGGAAGTGAAGATGCGTCCGGGCACGGATGATCACGACTTCAACCGCAAGGTGACGGATGCCGTGAAGTTT
CTGGAAGGCGGCGACAAGGTCAAGGTGACCTTGCGGTTCCGGGGCCGCGAAATGGCGCACCAGAACCTGGGTCGCGAGAT
GCTGGAAAAGGTCGTCGATCGGATCGAGGGGATCGGAAAGATCGAATCCATGCCCCGCATGGAAGGCCGCCAGATGGTCA
TGATGATCAACCCGGTCAGCAAGTAA

Upstream 100 bases:

>100_bases
CGAGAATCACGATAATAATAAGAGCACGGCTCATGTCAGTTCCCCATTGGGTCATTCACAGATAATGCCCCGCGCTTAAC
CCGCACGCCCGCCCCGCGCA

Downstream 100 bases:

>100_bases
GTAGCTTCATAAATCGACGCAAAGGGCCGGGTGTTAACCTGGCCTTTATGCATTCTGACTATCCCTCATCGCGCGCTCTT
CAGGGCCACGATATCAGGAA

Product: translation initiation factor IF-3

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 221; Mature: 221

Protein sequence:

>221_residues
MVGPRNHALLGEIEPLSALKNRRARDTFAYQTDGYKRTNVIARRPHNAPPQRDTGPRVNDRIRSDNVRLIGAEGENLGVV
TPARAMDLAADADLDLVEISPNADPPVCKIMDFGKYKYETQKREAEARKKQKTIDIKEVKMRPGTDDHDFNRKVTDAVKF
LEGGDKVKVTLRFRGREMAHQNLGREMLEKVVDRIEGIGKIESMPRMEGRQMVMMINPVSK

Sequences:

>Translated_221_residues
MVGPRNHALLGEIEPLSALKNRRARDTFAYQTDGYKRTNVIARRPHNAPPQRDTGPRVNDRIRSDNVRLIGAEGENLGVV
TPARAMDLAADADLDLVEISPNADPPVCKIMDFGKYKYETQKREAEARKKQKTIDIKEVKMRPGTDDHDFNRKVTDAVKF
LEGGDKVKVTLRFRGREMAHQNLGREMLEKVVDRIEGIGKIESMPRMEGRQMVMMINPVSK
>Mature_221_residues
MVGPRNHALLGEIEPLSALKNRRARDTFAYQTDGYKRTNVIARRPHNAPPQRDTGPRVNDRIRSDNVRLIGAEGENLGVV
TPARAMDLAADADLDLVEISPNADPPVCKIMDFGKYKYETQKREAEARKKQKTIDIKEVKMRPGTDDHDFNRKVTDAVKF
LEGGDKVKVTLRFRGREMAHQNLGREMLEKVVDRIEGIGKIESMPRMEGRQMVMMINPVSK

Specific function: IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins [H]

COG id: COG0290

COG function: function code J; Translation initiation factor 3 (IF-3)

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the IF-3 family [H]

Homologues:

Organism=Escherichia coli, GI1788012, Length=166, Percent_Identity=53.6144578313253, Blast_Score=174, Evalue=3e-45,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019813
- InterPro:   IPR001288
- InterPro:   IPR019815
- InterPro:   IPR019814 [H]

Pfam domain/function: PF00707 IF3_C; PF05198 IF3_N [H]

EC number: NA

Molecular weight: Translated: 25063; Mature: 25063

Theoretical pI: Translated: 10.21; Mature: 10.21

Prosite motif: PS00938 IF3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
5.0 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVGPRNHALLGEIEPLSALKNRRARDTFAYQTDGYKRTNVIARRPHNAPPQRDTGPRVND
CCCCCCCEEECCCCHHHHHHCCCCCCCEEEECCCCEECCEEEECCCCCCCCCCCCCCCHH
RIRSDNVRLIGAEGENLGVVTPARAMDLAADADLDLVEISPNADPPVCKIMDFGKYKYET
HCCCCCEEEEECCCCCCEEECCHHHHHHHCCCCCEEEEECCCCCCCEEEEEECCCHHHHH
QKREAEARKKQKTIDIKEVKMRPGTDDHDFNRKVTDAVKFLEGGDKVKVTLRFRGREMAH
HHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCCEEEEEEEECCHHHHH
QNLGREMLEKVVDRIEGIGKIESMPRMEGRQMVMMINPVSK
HHHHHHHHHHHHHHHHCCCHHHCCCCCCCCEEEEEEECCCC
>Mature Secondary Structure
MVGPRNHALLGEIEPLSALKNRRARDTFAYQTDGYKRTNVIARRPHNAPPQRDTGPRVND
CCCCCCCEEECCCCHHHHHHCCCCCCCEEEECCCCEECCEEEECCCCCCCCCCCCCCCHH
RIRSDNVRLIGAEGENLGVVTPARAMDLAADADLDLVEISPNADPPVCKIMDFGKYKYET
HCCCCCEEEEECCCCCCEEECCHHHHHHHCCCCCEEEEECCCCCCCEEEEEECCCHHHHH
QKREAEARKKQKTIDIKEVKMRPGTDDHDFNRKVTDAVKFLEGGDKVKVTLRFRGREMAH
HHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCCEEEEEEEECCHHHHH
QNLGREMLEKVVDRIEGIGKIESMPRMEGRQMVMMINPVSK
HHHHHHHHHHHHHHHHCCCHHHCCCCCCCCEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA