Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
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Accession | NC_007802 |
Length | 4,317,977 |
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The map label for this gene is 89053872
Identifier: 89053872
GI number: 89053872
Start: 1350462
End: 1351820
Strand: Direct
Name: 89053872
Synonym: Jann_1381
Alternate gene names: NA
Gene position: 1350462-1351820 (Clockwise)
Preceding gene: 89053871
Following gene: 89053873
Centisome position: 31.28
GC content: 61.96
Gene sequence:
>1359_bases ATGTCGAAAGGTAACTTTACCCGTCGAAACATGCTTAAGACGGGTGTCGCCACTGGTGCCGCCCTTGCAGTACCGACAAT TTTCACCGGCCAGGTCTGGGCCGATGGCCATACCGGTTTCACCAATGCGCCGGGTCCCGACAGTGTGACCCTTGGGTTCA ACGTGCCCCAGACAGGTGCCTATGCGGATGAGGGTGCCGACGAGCTGCGCGCGTTCCAGCTGGCGGTTCAGCACCTCAAC GGCGAGGGCGATGGCGGGATGATGAACACGTTCTCGTCCGATGCGCTCGACGGGACCGGTATCCTGGGGCGTCGCGTTGA ATACGTCACCGGCGACACACAAACGGCATCCGACGCCGCCCGCTCCTCCGCCCGGTCGATGATCGAGCGTGACGGTGCAA TCATGATTTCCGGCGGATCGTCCTCTGGCGTTGCCGTGGCGGTGCAGAGCCTCTGTCAGGATGCAGGCATCATATTTATG GCCGGCCTGACCCACGCCAATGACACTACCGGCAAGGACATGCGCGCCAACGGCTTCCGTCACTTCTTCAACACCGAGAT GACAGGCCGTGCGCTGGCGCCGATCCTTGAGGGTCTCTATGGCACGGACCGCAAGGTCTATCACTTGACCGCTGACTACA ACTGGGGCTGGTCGCAGGAACGGTCCATCCGTGCCTACACTGAAGGCATGGGTTGGGAGACAGTCAACAACGTGCTCACG CCTGTGGGCGCTGGCGACTTCTCGTCCTATCTGACGCCGGTTGCGAACTCGGGCGCGGATGTGCTGATCCTGAACCACTA CGGTGGGGACATGGTGAACTCGCTCACGCAGGCGGTGCAGTTCGGTCTTCGCGACATGCAGGCCAACGGCAAGAATTTCG AGATCGTTGTGCCGCTGTTCTCCCGCCTGATGGCGCGGGGCGCGGGATCGGCAATTGCAAACATCCACGGTTCCACGAAC TGGCACTGGTCCTTGCAGGACGAGGGCTCTCAGGCGTTTACACGCTCCTTCGGGACGGAGTACGGCTTCCCGCCGTCTCA GGCCGCACATACCTGCTATGTGCAGACCCTGCTCTATGCTGATGCCGTCGTCCGCGGTGGCTCGTTCAACCCCTGCTCGG TGGATGAAGCTCTCGCAGACTTCGAGTTCGACGGAATGGGCAACGGTCCCACGCTGTACCGGGCCGATGACCACCAGTGC TTCAAGGATGTGCTGGTCGTCCGCGGCAAGGAGAACCCGGAGAACGAGTACGACCTTCTGGAGATCGTCGAAGTCACTCC GCGCGATGCCGTGACCTATCCGCCCGATCACCCGGACTTCGTGGAAGGCCAGTTGGGCGCCTGCAACCCCGGCGCTTGA
Upstream 100 bases:
>100_bases GCGTTGATAATTATCGACGAGGCTGCGAACGTTCGTGCGGGTAGTTATTACCCTTGCCCAGATTGGGAGGTCTGGGTCTT TCCATTGAACGGAGGAAGAC
Downstream 100 bases:
>100_bases TCCACTCCGCGACTGCCCCGGCCTCCGTGTCGGGGCAGTCACCTGCGTGCCCACCCTTGCCTGCGGCGGGGCACTTCTTT TGCCAAATGGACAGGGAAAA
Product: twin-arginine translocation pathway signal
Products: NA
Alternate protein names: UreA/Short-Chain Amide ABC Transporter; Branched-Chain Amino Acid ABC Transporter; ABC Transporter; Tat Pathway Signal Sequence Domain Protein; Amino Acid ABC Transporter Periplasmic Protein; Inner-Membrane Translocator; ABC Transporter Periplasmic Protein; ABC-Type Transporter Periplasmic Component
Number of amino acids: Translated: 452; Mature: 451
Protein sequence:
>452_residues MSKGNFTRRNMLKTGVATGAALAVPTIFTGQVWADGHTGFTNAPGPDSVTLGFNVPQTGAYADEGADELRAFQLAVQHLN GEGDGGMMNTFSSDALDGTGILGRRVEYVTGDTQTASDAARSSARSMIERDGAIMISGGSSSGVAVAVQSLCQDAGIIFM AGLTHANDTTGKDMRANGFRHFFNTEMTGRALAPILEGLYGTDRKVYHLTADYNWGWSQERSIRAYTEGMGWETVNNVLT PVGAGDFSSYLTPVANSGADVLILNHYGGDMVNSLTQAVQFGLRDMQANGKNFEIVVPLFSRLMARGAGSAIANIHGSTN WHWSLQDEGSQAFTRSFGTEYGFPPSQAAHTCYVQTLLYADAVVRGGSFNPCSVDEALADFEFDGMGNGPTLYRADDHQC FKDVLVVRGKENPENEYDLLEIVEVTPRDAVTYPPDHPDFVEGQLGACNPGA
Sequences:
>Translated_452_residues MSKGNFTRRNMLKTGVATGAALAVPTIFTGQVWADGHTGFTNAPGPDSVTLGFNVPQTGAYADEGADELRAFQLAVQHLN GEGDGGMMNTFSSDALDGTGILGRRVEYVTGDTQTASDAARSSARSMIERDGAIMISGGSSSGVAVAVQSLCQDAGIIFM AGLTHANDTTGKDMRANGFRHFFNTEMTGRALAPILEGLYGTDRKVYHLTADYNWGWSQERSIRAYTEGMGWETVNNVLT PVGAGDFSSYLTPVANSGADVLILNHYGGDMVNSLTQAVQFGLRDMQANGKNFEIVVPLFSRLMARGAGSAIANIHGSTN WHWSLQDEGSQAFTRSFGTEYGFPPSQAAHTCYVQTLLYADAVVRGGSFNPCSVDEALADFEFDGMGNGPTLYRADDHQC FKDVLVVRGKENPENEYDLLEIVEVTPRDAVTYPPDHPDFVEGQLGACNPGA >Mature_451_residues SKGNFTRRNMLKTGVATGAALAVPTIFTGQVWADGHTGFTNAPGPDSVTLGFNVPQTGAYADEGADELRAFQLAVQHLNG EGDGGMMNTFSSDALDGTGILGRRVEYVTGDTQTASDAARSSARSMIERDGAIMISGGSSSGVAVAVQSLCQDAGIIFMA GLTHANDTTGKDMRANGFRHFFNTEMTGRALAPILEGLYGTDRKVYHLTADYNWGWSQERSIRAYTEGMGWETVNNVLTP VGAGDFSSYLTPVANSGADVLILNHYGGDMVNSLTQAVQFGLRDMQANGKNFEIVVPLFSRLMARGAGSAIANIHGSTNW HWSLQDEGSQAFTRSFGTEYGFPPSQAAHTCYVQTLLYADAVVRGGSFNPCSVDEALADFEFDGMGNGPTLYRADDHQCF KDVLVVRGKENPENEYDLLEIVEVTPRDAVTYPPDHPDFVEGQLGACNPGA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 48358; Mature: 48227
Theoretical pI: Translated: 4.51; Mature: 4.51
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKGNFTRRNMLKTGVATGAALAVPTIFTGQVWADGHTGFTNAPGPDSVTLGFNVPQTGA CCCCCCHHHHHHHHHHCCCCHHHCCEEEECEEEECCCCCCCCCCCCCEEEEECCCCCCCC YADEGADELRAFQLAVQHLNGEGDGGMMNTFSSDALDGTGILGRRVEYVTGDTQTASDAA CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHH RSSARSMIERDGAIMISGGSSSGVAVAVQSLCQDAGIIFMAGLTHANDTTGKDMRANGFR HHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCHH HFFNTEMTGRALAPILEGLYGTDRKVYHLTADYNWGWSQERSIRAYTEGMGWETVNNVLT HHHCCCCCCHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCHHHHHCCCCHHHHHHHHC PVGAGDFSSYLTPVANSGADVLILNHYGGDMVNSLTQAVQFGLRDMQANGKNFEIVVPLF CCCCCCHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHH SRLMARGAGSAIANIHGSTNWHWSLQDEGSQAFTRSFGTEYGFPPSQAAHTCYVQTLLYA HHHHHCCCCCEEEECCCCCCEEEEECCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH DAVVRGGSFNPCSVDEALADFEFDGMGNGPTLYRADDHQCFKDVLVVRGKENPENEYDLL HHHHCCCCCCCCCHHHHHHCCCCCCCCCCCEEEECCHHHHHHHHHEEECCCCCCCCCCCE EIVEVTPRDAVTYPPDHPDFVEGQLGACNPGA EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure SKGNFTRRNMLKTGVATGAALAVPTIFTGQVWADGHTGFTNAPGPDSVTLGFNVPQTGA CCCCCHHHHHHHHHHCCCCHHHCCEEEECEEEECCCCCCCCCCCCCEEEEECCCCCCCC YADEGADELRAFQLAVQHLNGEGDGGMMNTFSSDALDGTGILGRRVEYVTGDTQTASDAA CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHH RSSARSMIERDGAIMISGGSSSGVAVAVQSLCQDAGIIFMAGLTHANDTTGKDMRANGFR HHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCHH HFFNTEMTGRALAPILEGLYGTDRKVYHLTADYNWGWSQERSIRAYTEGMGWETVNNVLT HHHCCCCCCHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCHHHHHCCCCHHHHHHHHC PVGAGDFSSYLTPVANSGADVLILNHYGGDMVNSLTQAVQFGLRDMQANGKNFEIVVPLF CCCCCCHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHH SRLMARGAGSAIANIHGSTNWHWSLQDEGSQAFTRSFGTEYGFPPSQAAHTCYVQTLLYA HHHHHCCCCCEEEECCCCCCEEEEECCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH DAVVRGGSFNPCSVDEALADFEFDGMGNGPTLYRADDHQCFKDVLVVRGKENPENEYDLL HHHHCCCCCCCCCHHHHHHCCCCCCCCCCCEEEECCHHHHHHHHHEEECCCCCCCCCCCE EIVEVTPRDAVTYPPDHPDFVEGQLGACNPGA EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA